Revision history for JunfeiZhao
Deletions:
Additions:
Blog : [[www.zhaojunfei.com www.zhaojunfei.com]]
Deletions:
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~1) Cheng, Feixiong, **Junfei Zhao**, Michaela Fooksa, and Zhongming Zhao . ---**[[https://www.ncbi.nlm.nih.gov/pubmed/27026610 A network-based drug repositioning infrastructure for precision cancer medicine through targeting significantly mutated genes in the human cancer genomes.]]**--- J Am Med Inform Assoc. 2016 Jul;23(4):681-91.
Additions:
~1) Peilin Jia, Guangchun Han, **Junfei Zhao**, Pinyi Lu, and Zhongming Zhao. ---**[[https://academic.oup.com/nar/article/45/D1/D915/2770658/SZGR-2-0-a-one-stop-shop-of-schizophrenia SZGR 2.0: a one-stop shop of schizophrenia candidate genes.]]**--- Nucleic Acids Research (2017) 45 (D1): D915-D924.
~1) Feixiong Cheng, **Junfei Zhao** (co-first author), Ariella B. Hanker, Monica Red Brewer, Carlos L. Arteaga, Zhongming Zhao. ---**[[https://www.ncbi.nlm.nih.gov/pubmed/27771839 Transcriptome and proteome-oriented identification of dysregulated eIF4G, STAT3, and Hippo pathways altered by PIK3CAH1047R in HER2/ER-positive breast cancer.]]**--- Breast Cancer Res Treat. 2016 Dec;160(3):457-474.
~1) Feixiong Cheng, **Junfei Zhao** (co-first author), Ariella B. Hanker, Monica Red Brewer, Carlos L. Arteaga, Zhongming Zhao. ---**[[https://www.ncbi.nlm.nih.gov/pubmed/27771839 Transcriptome and proteome-oriented identification of dysregulated eIF4G, STAT3, and Hippo pathways altered by PIK3CAH1047R in HER2/ER-positive breast cancer.]]**--- Breast Cancer Res Treat. 2016 Dec;160(3):457-474.
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~1) Pora Kim, **Junfei Zhao**, Pinyi Lu, and Zhongming Zhao . ---**[[https://academic.oup.com/nar/article/45/D1/D256/2770660/mutLBSgeneDB-mutated-ligand-binding-site-gene mutLBSgeneDB: mutated Ligand Binding Site gene DataBase.]]**--- Nucleic Acids Research (2017) 45 (D1): D256-D263.
~1) Peilin Jia, Guangchun Han, **Junfei Zhao**, Pinyi Lu, and Zhongming Zhao . ---**[[https://academic.oup.com/nar/article/45/D1/D915/2770658/SZGR-2-0-a-one-stop-shop-of-schizophrenia SZGR 2.0: a one-stop shop of schizophrenia candidate genes.]]**--- Nucleic Acids Research (2017) 45 (D1): D915-D924.
~1) Peilin Jia, Guangchun Han, **Junfei Zhao**, Pinyi Lu, and Zhongming Zhao . ---**[[https://academic.oup.com/nar/article/45/D1/D915/2770658/SZGR-2-0-a-one-stop-shop-of-schizophrenia SZGR 2.0: a one-stop shop of schizophrenia candidate genes.]]**--- Nucleic Acids Research (2017) 45 (D1): D915-D924.
Additions:
~1) **Zhao J**, Cheng F, Zhao Z. ---**[[http://cancerres.aacrjournals.org/content/early/2017/03/31/0008-5472.CAN-16-2460 Tissue-specific signaling networks rewired by major somatic mutations in human cancer revealed by proteome-wide discovery.]]**--- Cancer Research (2017). doi: 10.1158/0008-5472.CAN-16-2460.
Additions:
Department of Systems Biology
Department of Biomedical Informatics
Columbia University College of Physicians & Surgeons
ICRC Building 8th Floor, Office 811
1130 St. Nicholas Ave · New York, NY 10032
Email : [[jz2835(at)cumc.columbia.edu]]
Department of Biomedical Informatics
Columbia University College of Physicians & Surgeons
ICRC Building 8th Floor, Office 811
1130 St. Nicholas Ave · New York, NY 10032
Email : [[jz2835(at)cumc.columbia.edu]]
Deletions:
University of Texas Health Science Center at Houston
Address: 7000 Fannin St Suit 615
Houston, TX 77030, USA
Email : [[junfei.zhao(at)uth.tmc.edu]]
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""<a href="http://www.clustrmaps.com/map/zhangroup.aporc.org/JunfeiZhao" title="Visitor Map for zhangroup.aporc.org/JunfeiZhao"><img src="//www.clustrmaps.com/map_v2.png?u=kkpr&d=u9PujgO0Xl9556aBY5EWr1QA5ICOxWQcuiZDaaud7iM" /></a>""
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</a>""
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~- PhD Major in Operational Research & Bioinformatics(PhD-direct student), Academy of Mathematics & System Sciences, CAS, 2009.9 - 2014.07
~- Bachelor Major in Information and Computing Science, Changsha University of science & technology, 2005.09 - 2009.06
~- Bachelor Major in Information and Computing Science, Changsha University of science & technology, 2005.09 - 2009.06
Deletions:
~- Bachelor Major in Information and Computing Science., Changsha University of science & technology, 2005.09 - 2009.06
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~- PhD Major in Operational Research & Bioinformatics((PhD-direct student)), Academy of Mathematics & System Sciences, CAS, 2009.9 - 2014.07
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No Differences
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Email : [[junfei.zhao(at)uth.tmc.edu]]
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~1) Junhua Zhang, Shihua Zhang, Yong Wang, **Junfei Zhao**, Xiang-Sun Zhang. ---**[[http://ieeexplore.ieee.org/xpl/abstractAuthors.jsp?tp=&arnumber=6314154&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6314154 Identifying Mutated Core Modules in Glioblastoma by Integrative Network Analysis.]]**--- 2012 IEEE International Conference on Systems Biology (ISB), pp. 304-309.
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~1) Junhua Zhang, Shihua Zhang, Yong Wang, **Junfei Zhao**, Xiang-Sun Zhang. ---**[[ Identifying Mutated Core Modules in Glioblastoma by Integrative Network Analysis.]]**--- 2012 IEEE International Conference on Systems Biology (ISB), pp. 304-309.
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~1) James C Costello et al. (**Junfei Zhao** is listed as one co-author).---**[[http://www.nature.com/nbt/journal/v32/n12/pdf/nbt.2877.pdf The challenge of drug sensitivity prediction: an assessment of methods through collaborative competition.]] **---Nature Biotechnology (2014), doi: 10.1038/nbt.2877..
~1) Mukesh Bansal et al. (**Junfei Zhao** is listed as one co-author).---**[[http://www.nature.com/nbt/journal/v32/n12/pdf/nbt.3052.pdf A community computational challenge to predict the activity of pairs of compounds.]] **---Nature biotechnology 32.12 (2014): 1213-1222.
~1) Mukesh Bansal et al. (**Junfei Zhao** is listed as one co-author).---**[[http://www.nature.com/nbt/journal/v32/n12/pdf/nbt.3052.pdf A community computational challenge to predict the activity of pairs of compounds.]] **---Nature biotechnology 32.12 (2014): 1213-1222.
Deletions:
~1) Mukesh Bansal et al. (**Junfei Zhao** is listed as one co-author).---**[[ Predicting activity of drug combinations through crowdsourcing.]] **---Nature Biotechnology (submitted) (2013).
Additions:
~1) Junhua Zhang, Shihua Zhang, Yong Wang, **Junfei Zhao**, Xiang-Sun Zhang. ---**[[Identifying Mutated Core Modules in Glioblastoma by Integrative Network Analysis.]]**--- 2012 IEEE International Conference on Systems Biology (ISB), pp. 304-309.
Additions:
~1) Pora Kim, Feixiong Cheng, **Junfei Zhao** (co-first author), and Zhongming Zhao. ---**[[http://nar.oxfordjournals.org/content/early/2015/10/29/nar.gkv1128.abstract ccmGDB: a database for cancer cell metabolism genes.]]**--- Nucleic acids research 44.D1 (2016): D959-D968.
~1) **Zhao J**, Cheng F, Wang Y, Arteaga CL, Zhao Z. ---**[[http://www.mcponline.org/content/15/2/642.long Systematic prioritization of druggable mutations in ~5,000 genomes across 16 cancer types using a structural genomics-based approach.]]**--- Molecular & Cellular Proteomics (2015): mcp-M115.
~1) Cheng F, **Zhao J**, Zhao Z. ---**[[http://bib.oxfordjournals.org/content/early/2015/08/24/bib.bbv068.full.pdf+html Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes.]]**--- Brief Bioinform (2015) doi: 10.1093/bib/bbv068.
~1) Feixiong Cheng, Chuang Liu, Chen-Ching Lin, **Junfei Zhao**, Peilin Jia, Wen-Hsiung Li, Zhongming Zhao. ---**[[http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004497 A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3,000 Cancer Genomes across 9 Cancer Types.]]**--- PLOS Computational Biology (2015). DOI: 10.1371/journal.pcbi.1004497.
~1) Zhao M, Kim P, Mitra R, **Zhao J**, Zhao Z. ---**[[http://nar.oxfordjournals.org/content/44/D1/D1023.long TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes.]]**--- Nucleic acids research (2015): gkv1268.
~1) **Junfei Zhao**,Xiang-Sun Zhang, Shihua Zhang.---**[[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3944117/ Predicting cooperative drug effects by the quantitative cellular profiling of response to individual drugs.]] **---CPT Pharmacometrics Syst. Pharmacol (2014) 3, e1; doi:10.1038/psp.2013.79.
~1) **Zhao J**, Cheng F, Wang Y, Arteaga CL, Zhao Z. ---**[[http://www.mcponline.org/content/15/2/642.long Systematic prioritization of druggable mutations in ~5,000 genomes across 16 cancer types using a structural genomics-based approach.]]**--- Molecular & Cellular Proteomics (2015): mcp-M115.
~1) Cheng F, **Zhao J**, Zhao Z. ---**[[http://bib.oxfordjournals.org/content/early/2015/08/24/bib.bbv068.full.pdf+html Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes.]]**--- Brief Bioinform (2015) doi: 10.1093/bib/bbv068.
~1) Feixiong Cheng, Chuang Liu, Chen-Ching Lin, **Junfei Zhao**, Peilin Jia, Wen-Hsiung Li, Zhongming Zhao. ---**[[http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004497 A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3,000 Cancer Genomes across 9 Cancer Types.]]**--- PLOS Computational Biology (2015). DOI: 10.1371/journal.pcbi.1004497.
~1) Zhao M, Kim P, Mitra R, **Zhao J**, Zhao Z. ---**[[http://nar.oxfordjournals.org/content/44/D1/D1023.long TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes.]]**--- Nucleic acids research (2015): gkv1268.
~1) **Junfei Zhao**,Xiang-Sun Zhang, Shihua Zhang.---**[[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3944117/ Predicting cooperative drug effects by the quantitative cellular profiling of response to individual drugs.]] **---CPT Pharmacometrics Syst. Pharmacol (2014) 3, e1; doi:10.1038/psp.2013.79.
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School of Biomedical Informatics
University of Texas Health Science Center at Houston
Address: 7000 Fannin St Suit 615
Houston, TX 77030, USA
Email : [[junfei.zhao@uth.tmc.edu]]
University of Texas Health Science Center at Houston
Address: 7000 Fannin St Suit 615
Houston, TX 77030, USA
Email : [[junfei.zhao@uth.tmc.edu]]
Deletions:
Vanderbilt University Medical Center
Department of Biomedical Informatics
2525 West End Avenue
Email : [[junfei.zhao@vanderbilt.edu]]
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Blog : [[www.zhaojunfei.com]]
Deletions:
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Postdoc Research Fellow
Bioinformatics and Systems Medicine Laboratory (BSML)
Vanderbilt University Medical Center
Department of Biomedical Informatics
2525 West End Avenue
Email : [[junfei.zhao@vanderbilt.edu]]
~- PhD Major in Operational Research ((PhD-direct student)), Academy of Mathematics & System Sciences, CAS, 2009.9 - 2014.07
Bioinformatics and Systems Medicine Laboratory (BSML)
Vanderbilt University Medical Center
Department of Biomedical Informatics
2525 West End Avenue
Email : [[junfei.zhao@vanderbilt.edu]]
~- PhD Major in Operational Research ((PhD-direct student)), Academy of Mathematics & System Sciences, CAS, 2009.9 - 2014.07
Deletions:
Academy of Mathematics & Systems Science, Chinese Academy of Sciences
=====赵俊飞=====
中国科学院数学与系统科学研究院博士研究生
Academy of Mathematics & Systems Science, CAS,
Address : East Road No.55, Zhongguancun, Beijing 100080, China
Email : [[zjf@amss.ac.cn]]
~- PhD Major in Operational Research ((PhD-direct student)), Academy of Mathematics & System Sciences, CAS, 2009.9 -
Additions:
~1) **Junfei Zhao**,Xiang-Sun Zhang, Shihua Zhang.---**[[ Predicting cooperative drug effects by the quantitative cellular profiling of response to individual drugs.]] **---CPT Pharmacometrics Syst. Pharmacol (2014) 3, e1; doi:10.1038/psp.2013.79(in press).
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Additions:
~1) **Junfei Zhao**,Xiang-Sun Zhang, Shihua Zhang.---**[[ Predicting cooperative drug effects by the quantitative cellular profiling of response to individual drugs.]] **---CPT Pharmacometrics Syst. Pharmacol (2014) 3, e1; doi:10.1038/psp.2013.79.
Deletions:
Additions:
~1) James C Costello et al. (**Junfei Zhao** is listed as one co-author).---**[[ The challenge of drug sensitivity prediction: an assessment of methods through collaborative competition.]] **---Nature Biotechnology (submitted) (2013).
~1) Mukesh Bansal et al. (**Junfei Zhao** is listed as one co-author).---**[[ Predicting activity of drug combinations through crowdsourcing.]] **---Nature Biotechnology (submitted) (2013).
~1) Mukesh Bansal et al. (**Junfei Zhao** is listed as one co-author).---**[[ Predicting activity of drug combinations through crowdsourcing.]] **---Nature Biotechnology (submitted) (2013).
No Differences
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~1) **Junfei Zhao**, Jiguang Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/14/ISORA2011F15.pdf A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks.]] **---ISORA 2011, pp. 133-143.
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Additions:
~1) **Junfei Zhao**,Jiguang Wang,Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/14/ISORA2011F15.pdf A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks.]] **---ISORA 2011, pp. 133-143.
Additions:
~1) **Junfei Zhao**,Xiang-Sun Zhang, Shihua Zhang.---**[[ Predicting cooperative drug effects by the quantitative cellular profiling of response to individual drugs.]] **---CPT: Pharmacometrics and Systems Pharmacology (submitted) (2013).
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~1) Chen Chen, **Junfei Zhao**, Qiang Huang, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://www.biomedcentral.com/1752-0509/6/S1/S7 Inferring domain-domain interactions from protein-protein interactions in the complex network conformation]].**---BMC Systems Biology (2012), 6(Suppl 1):S7.
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~1) Chen Chen, **Junfei Zhao**, Qiang Huang, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://www.biomedcentral.com/1752-0509/6/S1/S7]].**---BMC Systems Biology (2012), 6(Suppl 1):S7.
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~1) Chen Chen, **Junfei Zhao**, Qiang Huang, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033181 Inferring Domain-Domain Interactions Using an Extended Parsimony Model]].**---BMC Systems Biology (2012), 6(Suppl 1):S7.
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Bioinformatics; System Biology.
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Additions:
Blog : [[http://zhaojunfei.net]]
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Email : [[zjf@amss.ac.cn]]
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""<a href="http://www4.clustrmaps.com/user/057db42c"><img src="http://www4.clustrmaps.com/stats/maps-no_clusters/zhangroup.aporc.org-JunfeiZhao-thumb.jpg" alt="Locations of visitors to this page" />
</a>""
</a>""
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</a> ""
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""<a href="http://www3.clustrmaps.com/counter/maps.php?url=http://zhangroup.aporc.org/JunfeiZhao" id="clustrMapsLink"><img src="http://www3.clustrmaps.com/counter/index2.php?url=http://zhangroup.aporc.org/JunfeiZhao" style="border:0px;" alt="Locations of visitors to this page" title="Locations of visitors to this page" id="clustrMapsImg" onerror="this.onerror=null; this.src='http://www2.clustrmaps.com/images/clustrmaps-back-soon.jpg'; document.getElementById('clustrMapsLink').href='http://www2.clustrmaps.com';" />
</a> ""
</a> ""
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=== {{color c="blue" text=" Educational Background "}} ===
=== {{color c="blue" text="Research Areas and Interests"}} ===
=== {{color c="blue" text="Publications"}} ===
=== {{color c="blue" text="Links"}} ===
=== {{color c="blue" text="Research Areas and Interests"}} ===
=== {{color c="blue" text="Publications"}} ===
=== {{color c="blue" text="Links"}} ===
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''Research Areas and Interests''
''Publications''
=== Links ===
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</a>
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<a href="http://www4.clustrmaps.com/user/057db42c"><img src="http://www4.clustrmaps.com/stats/maps-no_clusters/zhangroup.aporc.org-JunfeiZhao-thumb.jpg" alt="Locations of visitors to this page" />
</a>
</a>
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~- PhD Major in Operational Research ((PhD-direct student)), Academy of Mathematics & System Sciences, CAS, 2009.9 -
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~- PhD Major in Operational Research, Academy of Mathematics & System Sciences, CAS, 2009.9 -
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""<img src="images/users/zjf_mainpage.png" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
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''Publications''
~1) **Junfei Zhao**, Shihua Zhang, Ling-Yun Wu, and Xiang-Sun Zhang.---**[[http://bioinformatics.oxfordjournals.org/content/early/2012/09/14/bioinformatics.bts564.abstract?keytype=ref&ijkey=jTZqXD6CglnPsUI Efficient methods for identifying mutated driver pathways in cancer.]] **---//Bioinformatics//, doi: 10.1093/bioinformatics/bts564, 2012.
~1) Shihua Zhang, **Junfei Zhao**, Xiang-Sun Zhang.---**[[http://pre.aps.org/abstract/PRE/v85/i5/e056110 Common community structure in time-varying networks.]] **---//Physical Review E//, 85, 056110, 2012.
~1) Chen Chen, **Junfei Zhao**, Qiang Huang, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033181 Inferring Domain-Domain Interactions Using an Extended Parsimony Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 385-389.
~1) **Junfei Zhao**, Shihua Zhang, Ling-Yun Wu, and Xiang-Sun Zhang.---**[[http://bioinformatics.oxfordjournals.org/content/early/2012/09/14/bioinformatics.bts564.abstract?keytype=ref&ijkey=jTZqXD6CglnPsUI Efficient methods for identifying mutated driver pathways in cancer.]] **---//Bioinformatics//, doi: 10.1093/bioinformatics/bts564, 2012.
~1) Shihua Zhang, **Junfei Zhao**, Xiang-Sun Zhang.---**[[http://pre.aps.org/abstract/PRE/v85/i5/e056110 Common community structure in time-varying networks.]] **---//Physical Review E//, 85, 056110, 2012.
~1) Chen Chen, **Junfei Zhao**, Qiang Huang, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033181 Inferring Domain-Domain Interactions Using an Extended Parsimony Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 385-389.
Deletions:
Reading
sports
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Phd candidate
Academy of Mathematics & Systems Science, Chinese Academy of Sciences
=====赵俊飞=====
中国科学院数学与系统科学研究院博士研究生
Academy of Mathematics & Systems Science, CAS,
Address : East Road No.55, Zhongguancun, Beijing 100080, China
Email : zjf@amss.ac.cn
Academy of Mathematics & Systems Science, Chinese Academy of Sciences
=====赵俊飞=====
中国科学院数学与系统科学研究院博士研究生
Academy of Mathematics & Systems Science, CAS,
Address : East Road No.55, Zhongguancun, Beijing 100080, China
Email : zjf@amss.ac.cn
Deletions:
Institute of Applied Mathematic
Academy of Mathematics and Systems Science
Chinese Academy of Science
~- ''Name:'' Junfei Zhao
~- ''Birth:'' June 1987
~- ''E-mail:'' [[zjf@amss.ac.cn]]
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[[Academy of Mathematics and Systems Science]]
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Additions:
[[Academy of Mathematics and Systems Science, Chinese academy of sciences]]
Deletions:
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~- ''E-mail:'' [[zjf@amss.ac.cn]]
Deletions:
Deletions:
Additions:
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Complex Network; System Biology.
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Additions:
''Educational Background''
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"Educational Background"
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"Educational Background "
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Deletions:
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" Educational Background "
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--------------------------------------------------------------------------------
''Research Areas and Interests''
Conditional Random Fields and its applications in bioinformatics.
--------------------------------------------------------------------------------
''Hobbies''
Reading
sports
--------------------------------------------------------------------------------
''Research Areas and Interests''
Conditional Random Fields and its applications in bioinformatics.
--------------------------------------------------------------------------------
''Hobbies''
Reading
sports
--------------------------------------------------------------------------------
Deletions:
~-[[SourceCodesITPI]]
=== {{colour c="green" text="Research Interests"}} ===
~- Evolution
~- Pathogenesis of Infectious Diseases
~- Bioinformatics and Computational Biology
~- Network Biology and Systems Biology
=== {{colour c="green" text="Hobbies"}} ===
~- Shuttlecock, Table tennis, Mountain climbing
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""<img src="images/users/junfeizhao.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
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""<img src="images/users/junfeizhao.JPG" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
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""<img src="images/users/" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
~- Master Major in Operational Research, Academy of Mathematics & System Sciences, CAS, 2009.9 -
~- Master Major in Operational Research, Academy of Mathematics & System Sciences, CAS, 2009.9 -
Deletions:
~- Master Major in Genetics, Academy of Military Medical Science, 2009.09 -