Revision history for ShihuaZhang


Revision [7953]

Last edited on 2016-10-07 00:18:23 by ShihuaZhang
Deletions:
""<img src="images/users/shzhang.jpg" alt="shihua.jpg" style="float: left; margin: 1.0%; padding: 0.5%;">""
====== Shihua Zhang ======
Associate Professor
Institute of Applied Mathematics,
Academy of Mathematics and Systems Science,
Chinese Academy of Science
''Address:'' No.55, Zhongguancun East road, Beijing 100190, China
''Tel:'' 86-10-62616670
''Email:'' zsh@amss.ac.cn
=== See my lab page [[http://page.amss.ac.cn/shihua.zhang/index.html Shihua Zhang's Lab at CAS]] ===
See me on [[http://scholar.google.com/citations?hl=en&user=81AqAAYAAAAJ Google Scholar]] or [[http://www.researcherid.com/ProfileView.action?queryString=KG0UuZjN5WlbNDYeE9y49KKU1f%2FTG%2B4MHO2msi8BW3A%3D&SrcApp=CR&returnCode=ROUTER.Unauthorized& ISI]]
::c::----
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is an Associate Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 50 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；获得国家自然科学基金“优秀青年”基金（2014年）、中国科学院“卓越青年科学家”项目（2014年）、入选“陈景润未来之星”特殊人才计划（2011年）、“中国科学院青年创新促进会”（2011 年）任数理分会会长。
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Last updated: 6/30/12

Revision [7129]

Edited on 2014-09-08 10:54:31 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；获得国家自然科学基金“优秀青年”基金（2014年）、中国科学院“卓越青年科学家”项目（2014年）、入选“陈景润未来之星”特殊人才计划（2011年）、“中国科学院青年创新促进会”（2011 年）任数理分会会长。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）、“中国科学院青年创新促进会”（2011 年）任数理分会会长、中国科学院“卓越青年科学家”项目（2014年）等。

Revision [6992]

Edited on 2014-06-24 18:36:40 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）、“中国科学院青年创新促进会”（2011 年）任数理分会会长、中国科学院“卓越青年科学家”项目（2014年）等。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）、“中国科学院青年创新促进会”（2011 年）任数理分会会长、“中国科学院卓越青年科学家”项目（2014年）等。

Revision [6982]

Edited on 2014-06-23 16:01:28 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）、“中国科学院青年创新促进会”（2011 年）任数理分会会长、“中国科学院卓越青年科学家”项目（2014年）等。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）、“中国科学院青年创新促进会”（2011 年）任数理分会会长、“中国科学院卓越青年科学家项目”（2014年）等。

Revision [6981]

Edited on 2014-06-23 16:00:16 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）、“中国科学院青年创新促进会”（2011 年）任数理分会会长、“中国科学院卓越青年科学家项目”（2014年）等。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年），“中国科学院青年创新促进会”（2011 年）任数理分会会长，和“中国科学院卓越青年科学家项目”（2014年）。

Revision [6980]

Edited on 2014-06-23 15:59:12 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年），“中国科学院青年创新促进会”（2011 年）任数理分会会长，和“中国科学院卓越青年科学家项目”（2014年）。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。

Revision [6862]

Edited on 2013-12-03 20:16:58 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学、日本东京大学等研究机构访问学习。目前担任国际期刊BMC Genomics和Frontiers in Bioinformatics and Computational Biology的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊BMC Genomics的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。

Revision [6856]

Edited on 2013-11-27 15:39:21 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊BMC Genomics的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国青年科技奖、2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊BMC Genomics的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。

Revision [6814]

Edited on 2013-10-25 18:01:57 by ShihuaZhang
Additions:
=== See my lab page [[http://page.amss.ac.cn/shihua.zhang/index.html Shihua Zhang's Lab at CAS]] ===
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊BMC Genomics的副编辑（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。
Deletions:
=== See my lab page [[http://page.amss.ac.cn/shihua.zhang/index.html The Zhang Lab]] ===
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊BMC Genomics的副主编（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。

Revision [6769]

Edited on 2013-10-10 15:07:46 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊BMC Genomics的副主编（Associate Editor），ISRN Applied Mathematics和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊ISRN Applied Mathematics 和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。

Revision [6741]

Edited on 2013-09-18 10:18:35 by ShihuaZhang
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== See my lab page [[http://page.amss.ac.cn/shihua.zhang/index.html The Zhang Lab]] ==

Revision [6740]

Edited on 2013-09-18 10:18:02 by ShihuaZhang
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=== See my lab page [[http://page.amss.ac.cn/shihua.zhang/index.html The Zhang Lab]] ===

Revision [6739]

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Edited on 2013-09-18 10:16:35 by ShihuaZhang
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Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is an Associate Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 50 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is an Associate Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 40 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.

Revision [6737]

Edited on 2013-09-18 10:15:50 by ShihuaZhang
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=={{color fg="white" bg="gray" text="Attachments"}}==
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==={{color fg="white" bg="gray" text="Attachments"}}===

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Edited on 2013-09-18 10:15:01 by ShihuaZhang
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==={{color fg="white" bg="gray" text="Aphorism"}}===
~-"The whole of science is nothing more than a refinement of everyday thinking." —— Albert Einstein (1879-1955)
~-"In science, the important thing is to modify and change one’s ideas as science advances." —— Herbert Spencer (1820–1903)
~-"The good life is one inspired by love and guided by knowledge." —— Betrand Russell
~-"The difficulty lies, not in the new ideas, but in escaping the old ones, which ramify, for those brought up as most of us have been, into every corner of our minds.." ——John Maynard Keynes (1883 - 1946)
~-"Life is like riding a bicycle. To keep your balance, you must keep moving." —— Albert Einstein (1879-1955)
~-"It's not your aptitude but your attitude that determines your altitude in life." —— Jesse Jackson
~-"People can be divided into three classes, the few who make things happen, the many who watch things happen, and the overwhelming majority who have no idea what has happened."

Revision [6734]

Edited on 2013-09-18 10:13:03 by ShihuaZhang
Deletions:
==={{color fg="white" bg="gray" text="Positions"}}===
~- 3/2013 - present, Associate Professor.
~~& Institute of Applied Mathematics, [[http://www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science (Beijing, China).
~- 6/2008 - 2/2013, Assistant Professor.
~~& Institute of Applied Mathematics, [[http://www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science (Beijing, China).
==={{color fg="white" bg="gray" text="Research Experience"}}===
~-10/2012 - 2/2013, Visiting Research Fellow.
~~&[[http://ww1.math.nus.edu.sg/ Department of Mathematics]], National University of Singapore, Singapore.
~-10/2011 - 12/2011, Visiting Scholar.
~~&[[https://www.ipam.ucla.edu/ Institute for Pure and Applied Mathematics (IPAM)]], University of California at Los Angeles, USA.
~-7/2008 - 12/2010, Postdoctoral Fellow.
~~&[[http://www.cmb.usc.edu/ Program in Molecular and Computational Biology]], Department of Biological Sciences, University of Southern California (Los Angeles, USA).
==={{color fg="white" bg="gray" text="Educational Background"}}===
~- 9/1999 - 7/2003, Bachelor of Science in Applied Mathematics,
~~& School of Mathematics and Statistics, Yunnan University (Kunming, Yunnan, China)
~- 9/2003 - 6/2008, PhD of Operational Research and Control (PhD-direct student),
~~& [[http://www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science (Beijing, China)
==={{color fg="white" bg="gray" text="Research Interests"}}===
~-Bioinformatics and Computational Biology
~~&Cancer genomics
~~&Computational epigenomics
~~&Network biology
~~&High-throughput biological data analysis
~~&Structural bionformatics: protein structures comparison and assembly determination
~-Complex networks/Network science
~~&Community structure in complex networks
~~&Structure and dynamics of networks

Revision [6733]

Edited on 2013-09-18 10:11:58 by ShihuaZhang

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Revision [6732]

Edited on 2013-09-18 10:11:31 by ShihuaZhang
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==={{color fg="white" bg="gray" text="Selected Publications"}}===
~- Breast tumour subgroups reveal diverse clinical predictive power.
~~& Zhaoqi Liu, Xiang-Sun Zhang, __Shihua Zhang__^.
~~& In submission (2013).
~- Infer biodiversity of metagenomic samples and reveal homogeneous genomes based on the structure of taxonomy tree.
~~& Yu-Qing Qiu, Xue Tian, __Shihua Zhang__^.
~~& Submitted to APBC2014.
~- Discovery of cell-type specific regulatory elements in the human genome by differential chromatin modification analysis.
~~& Chen Chen*,__Shihua Zhang__*^, Xiang-Sun Zhang (*Co-first authors; ^Corresponding author).
~~& Nucleic Acids Research (2013), in press. {{files download="dCMA.rar" text="Code"}}
~- Integrating somatic mutation, copy number variation, and gene expression data to identify mutated core modules in cancers.
~~& Junhua Zhang^, __Shihua Zhang__^, Yong Wang, Xiang-Sun Zhang (^Corresponding author).
~~& BMC Systems Biology (2013), in press.
~- Efficient methods for identifying mutated driver pathways in cancer.
~~& Junfei Zhao*, __Shihua Zhang__*^, Ling-Yun Wu, Xiang-Sun Zhang (*Co-first authors; ^Corresponding author).
~~& Bioinformatics (2012) 28(22): 2940-2947. doi: 10.1093/bioinformatics/bts564. {{files download="MDPFinder.rar" text="Code"}} [[http://bioinformatics.oxfordjournals.org/content/early/2012/09/14/bioinformatics.bts564.abstract?keytype=ref&ijkey=jTZqXD6CglnPsUI PDF]]
~- Discovery of multi-dimensional modules by integrative analysis of cancer genomic data.
~~& __Shihua Zhang__, Chun-Chi Liu, Wenyuan Li, Hui Shen, Peter Laird, Xianghong Jasmine Zhou.
~~& Nucleic Acids Research, (2012), 40(19): 9379-9391. doi: 10.1093/nar/gks725. [[http://nar.oxfordjournals.org/content/40/19/9379 PDF]]
~- Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.
~~& Wenyuan Li*, __Shihua Zhang__*, Chun-Chi Liu, Xianghong Jasmine Zhou (*Co-first authors).
~~& Bioinformatics, (2012), 28(19): 2458-2466. doi: 10.1093/bioinformatics/bts476. {{files download="sMBPLS.zip" text="Code"}}[[http://bioinformatics.oxfordjournals.org/content/28/19/2458 PDF]][[http://zhoulab.usc.edu/sMBPLS/ Materials]]
~- Common community structure in time-varying networks.
~~& __Shihua Zhang__, Junfei Zhao, Xiang-Sun Zhang.
~~& [[http://pre.aps.org/abstract/PRE/v85/i5/e056110 Physical Review E]], 85, 056110, 2012. e-print:[[http://arxiv.org/abs/1111.1365v2 arXiv:1111.1365v2]].
~- A novel computational framework for simultaneous integration of multiple functional genomic data to identify microRNA-gene regulatory modules.
~~& __Shihua Zhang__, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou
~~& Bioinformatics (ISMB2011), 2011, 27:i401-i409. {{files download="jNMF.zip" text="Code"}} [[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 PDF]] [[http://zhoulab.usc.edu/SNMNMF/ Materials]]
~- Exploring the spatial and temporal organization of a cell’s proteome
~~& Martin Beck, Maya Topf, Zachary Frazier, Harianto Tjong, Min Xu, __Shihua Zhang__ and Frank Alber.
~~& Journal of Structural Biology, 2011, 173(3):483-496. [[http://www.ncbi.nlm.nih.gov/pubmed/21094684 PDF]]
~- A fast mathematical programming procedure for simultaneous fitting of assembly components into cryo-EM density maps.
~~& __Shihua Zhang__, Daven Vasishtan, Min Xu, Maya Topf, Frank Alber.
~~& Bioinformatics (ISMB2010), 2010, 26(12):i261-i268. [[http://f1000biology.com/article/id/3524956/evaluation Faculty of 1000 Biology]]
~- Determining modular organization of protein interaction networks by maximizing modularity density.
~~& __Shihua Zhang__, Xue-Mei Ning, Chris Ding, Xiang-Sun Zhang.
~~& BMC Systems Biology, 2010, 4:S10.
~- Detecting disease associated modules and prioritizing active genes based on high throughput data.
~~& Yu-Qing Qiu*, __Shihua Zhang__*, Xiang-Sun Zhang, Luonan Chen (*Co-first authors).
~~& [[http://www.biomedcentral.com/1471-2105/11/26 BMC Bioinformatics]], 11:26, 2010. doi:10.1186/1471-2105-11-26. [[http://www.biomedcentral.com/info/about/mostviewed/ Highly accessed]]
~- Disease-aging network reveals significant roles of aging genes in connecting genetic diseases.
~~& Ji-Guang Wang, __Shihua Zhang__, Yong Wang, Xiang-Sun Zhang, Luonan Chen.
~~& [[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000521 PLoS Computational Biology]], 5(9): e1000521. doi:10.1371/journal.pcbi.1000521.
~- Identifying differentially expressed pathways based on a mixed integer linear programming model.
~~& Qiu Yuqing, __Shihua Zhang__, Xiang-Sun Zhang, Luonan Chen.
~~& IET Systems Biology, 3(6), 475-486, 2009.
~- Quantitative function for community detection.
~~& Zhenping Li*, __Shihua Zhang__*, Rui-Sheng Wang, Xiang-Sun Zhang and Luonan Chen (*Co-first authors).
~~&[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000077000003036109000001&idtype=cvips&gifs=yes Physical Review E]], 77, 036109, 2008.
~~&It has been selected by [[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000015000006000091000001&idtype=cvips&gifs=Yes Virtual Journal of Biological Physics Research]], 15(6), 2008.
~- Biomolecular network querying: a promising approach in systems biology.
~~&__Shihua Zhang__, Xiang-Sun Zhang and Luonan Chen.
~~&[[http://www.biomedcentral.com/bmcsystbiol/ BMC Systems Biology]], 2008, 2:5. doi:10.1186/1752-0509-2-5. (Complementary). [[http://www.biomedcentral.com/info/about/mostviewed/ Highly accessed]]
~- Discovering functions and revealing mechanisms at molecular level from biological networks.
~~&__Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen.
~~&[[http://www3.interscience.wiley.com/cgi-bin/abstract/115804878/ABSTRACT Proteomics]], 7(16), 2856-69, 2007.
~- Alignment of molecular networks by integer quadratic programming.
~~& Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen (*Co-first authors).
~~& [[http://bioinformatics.oxfordjournals.org/ Bioinformatics]], [[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/13/1631 23(13):1631-1639, 2007; doi:10.1093/bioinformatics/btm156]].
~- A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.
~~&__Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang.
~~& [[http://www.inderscience.com/browse/index.php?journalID=189 International Journal of Data Mining and Bioinformatics]], 3(1), 68-84, 2009.
~- Hubs with network motifs organize modularity dynamically in the protein-protein interaction network of yeast.
~~& Guangxu Jin, __Shihua Zhang__, Xiang-Sun Zhang, Luonan Chen
~~& [[http://www.plosone.org/article/fetchArticle.action?articleURI=info:doi/10.1371/journal.pone.0001207 PLoS ONE]] 2(11): e1207, 2007. doi:10.1371/journal.pone.0001207.
~-[[http://link.aps.org/abstract/PRE/v76/e046103 Uncovering fuzzy community structure in complex networks]]
~~&__Shihua Zhang__, Rui-Sheng Wang, Xiang-Sun Zhang
~~&[[http://pre.aps.org/ Physical Review E]], 76, 046103, 2007.
~~&It has been selected by [[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000014000008000128000001&idtype=cvips&gifs=Yes Virtual Journal of Biological Physics Research]], 14(8), 2007.
~- Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis.
~~& __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang.
~~&[[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html European Physical Journal B]], 57, 67-74, 2007.
~- Clustering complex networks and biological networks by Nonnegative Matrix Factorization with various similarity measures
~~&Rui-Sheng Wang, __Shihua Zhang__, Yong Wang, Xiang-Sun Zhang, Luonan Chen
~~&[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V10-4TC34VB-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=10&md5=b29f71dd1b7f09ca3abc6d2f20f3ab12 Neurocomputing]], 72, 134-141, 2008.
~-[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4KKFYKY-3&_user=5361375&_coverDate=01%2F15%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000066948&_version=1&_urlVersion=0&_userid=5361375&md5=d293363358012e4536deb99ca67bbd3a Identification of overlapping community structure in complex networks using fuzzy c-means clustering]]
~~& __Shihua Zhang__, Rui-Sheng Wang, and Xiang-Sun Zhang
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A: Statistical Mechanics and its Applictions]], 2007, 374, 483–490
~- Detecting community structure in complex networks based on a measure of information discrepancy.
~~& Junhua Zhang, __Shihua Zhang__, Xiang-Sun Zhang
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A: Statistical Mechanics and its Applictions]], 2008, 387(7), 1675-1682. [[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 doi:10.1016/j.physa.2007.10.061]].
~-[[http://www.springerlink.com/content/gp6861366h541474/?p=1bdd55bce8a644eaaccdb7ece73033b4&pi=0 Identifying modules in complex networks by a graph-theoretical method and its application in protein interaction networks]]
~~& Rui-Sheng Wang, __Shihua Zhang__, Xiang-Sun Zhang, Luonan Chen
~~& [[http://www.springer.com/east/home?SGWID=5-102-69-173621840-0&changeHeader=true&SHORTCUT=www.springer.com/series/1244 Lecture Notes in Artificial Intelligence]], 4682, 1090-1101, 2007.
~- Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison.
~~& Luonan Chen, Ling-Yun Wu, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang.
~~&[[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18. [[http://www.biomedcentral.com/info/about/mostviewed/ Highly accessed]]
~- Identification of functional modules in a PPI network by clique percolation clustering.
~~& __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang.
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], 30(6), 445-451, 2006.
~- Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.
~~&__Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang.
~~&[[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
----
==={{color fg="white" bg="gray" text="Honors and Awards"}}===
~- Lu Jia-Xi Young Investigator Award, 2013.
~- Youth Innovation Promotion Association Member (2011--2014).
~- Chen Jingrun Future Star (2011--2013).
~- National Excellent PhD thesis Award, 2010. [[http://www.cdgdc.edu.cn/xwyyjsjyxx/zlpj/pgpsdtxx/267995.shtml link]]
~- Excellent PhD thesis Award of CAS, 2009. [[http://www.pe.cas.cn/jypx/qgyxbsxwlw/200909/t20090921_2513751.html link]]
~- Special Presidential Prize of CAS, 2008. [[http://www.sciencenet.cn/htmlnews/2008/5/207177.html link]]
==={{color fg="white" bg="gray" text="Grants"}}===
~- NSFC No. 11001256, 2011-2013 (PI)
~- NSFC No. 11131009, 2012-2016 (Co-PI)
~- Special Presidential Prize Foundation from CAS, No.4310900, 2010-2012 (PI)
~- Youth Innovation Promotion Association Foundation of CAS, 2011-2014 (PI)
==={{color fg="white" bg="gray" text="Index and Journals"}}===
~-[[http://apps.isiknowledge.com/UA_GeneralSearch_input.do?product=UA&search_mode=GeneralSearch&SID=2DOANfgOkP5@2KbHPKF&preferencesSaved= ISI Web of Knowledge]]
~-[[http://www.engineeringvillage2.org.cn/controller/servlet/Controller?CID=quickSearch&database=1 EI Engineering Village 2]]
~-[[Journal Journal and Conference Information]]
~-[[http://www.ieee.org/portal/pages/about/whatis/code.html;jsessionid=FN2W3vGDLyFn02PN3GTWfKph2vtlMG3LqlhDnB2GdHvLDlVYJXXr!931003289 IEEE Code of Ethics]]
==={{color fg="white" bg="gray" text="Useful links"}}===
~-[[http://zhangroup.aporc.org/ShihuaZhang/Bioinformatics_Lab]]
~- [[http://www.binf.umn.edu/whatsbinf.html Bioinformatics]]
~- [[http://stommel.tamu.edu/~baum/toolboxes.html Matlab toolbox]]
~- [[http://www.ee.columbia.edu/~marios/matlab/matlab_tricks.html Matlab tips and tricks]]
~- [[http://www.ctex.org CTEX.ORG]]
~- [[http://mathworld.wolfram.com/ Mathworld]]
~- [[http://www.cs.cmu.edu/~mleone/how-to.html]]
~- [[http://www.oakland.edu/enp/ Erdös Number]]
~- [[http://cyvision.if.sc.usp.br/~francisco/networks/softwares.htm Complex networks]]
~-[[http://mathworld.wolfram.com/ Mathematics resource]]

Revision [6731]

Edited on 2013-09-18 10:07:23 by ShihuaZhang
Deletions:
[[http://zhangroup.aporc.org/ZhangShihua Chinese Page]]

Revision [6727]

Edited on 2013-09-17 00:38:19 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is an Associate Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 40 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is an Associate Professor Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 40 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.

Revision [6726]

Edited on 2013-09-02 16:33:15 by ShihuaZhang
Additions:
== See my lab page [[http://page.amss.ac.cn/shihua.zhang/index.html The Zhang Lab]] ==
Deletions:
See my lab page [[http://page.amss.ac.cn/shihua.zhang/index.html The Zhang Lab]]

Revision [6725]

Edited on 2013-09-02 16:31:28 by ShihuaZhang
Additions:
See my lab page [[http://page.amss.ac.cn/shihua.zhang/index.html The Zhang Lab]]

Revision [6706]

Edited on 2013-08-22 01:18:58 by ShihuaZhang
Additions:
~- Breast tumour subgroups reveal diverse clinical predictive power.
~~& Zhaoqi Liu, Xiang-Sun Zhang, __Shihua Zhang__^.
~~& In submission (2013).
~- Infer biodiversity of metagenomic samples and reveal homogeneous genomes based on the structure of taxonomy tree.
~~& Yu-Qing Qiu, Xue Tian, __Shihua Zhang__^.
~~& Submitted to APBC2014.

Revision [6657]

Edited on 2013-07-22 19:18:21 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is an Associate Professor Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 40 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is an Associate Professor Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 30 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.

Revision [6656]

Edited on 2013-07-22 19:16:15 by ShihuaZhang
Additions:
~~& Nucleic Acids Research (2013), in press. {{files download="dCMA.rar" text="Code"}}
Deletions:
~~& Nucleic Acids Research (2013), in revision. {{files download="dCMA.rar" text="Code"}}

Revision [6583]

Edited on 2013-06-04 09:41:08 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学、统计学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊ISRN Applied Mathematics 和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊ISRN Applied Mathematics 和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。

Revision [6578]

Edited on 2013-05-29 22:10:47 by ShihuaZhang
Additions:
~- Common community structure in time-varying networks.
Deletions:
~- Common community Structure in Time-varying Networks.

Revision [6577]

Edited on 2013-05-29 22:08:58 by ShihuaZhang
Additions:
~~& Nucleic Acids Research (2013), in revision. {{files download="dCMA.rar" text="Code"}}
~~& BMC Systems Biology (2013), in press.
Deletions:
~~& Nucleic Acids Research, (2013), in revision. {{files download="dCMA.rar" text="Code"}}
~~& BMC Systems Biology, (2013), in press.

Revision [6576]

Edited on 2013-05-29 22:08:39 by ShihuaZhang
Additions:
~~& Nucleic Acids Research, (2013), in revision. {{files download="dCMA.rar" text="Code"}}
~~& BMC Systems Biology, (2013), in press.
Deletions:
~~& In submission. {{files download="dCMA.rar" text="Code"}}
~~& Submitted to BMC Systems Biology.

Revision [6549]

Edited on 2013-05-09 10:12:46 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊ISRN Applied Mathematics 和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight系列，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊ISRN Applied Mathematics 和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight Track，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。

Revision [6548]

Edited on 2013-05-09 10:10:45 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学与生物信息学，目前主要研究兴趣包括计算癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊ISRN Applied Mathematics 和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight Track，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学与生物信息学，目前主要研究兴趣是癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊ISRN Applied Mathematics 和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight Track，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。

Revision [6547]

Edited on 2013-05-09 10:10:24 by ShihuaZhang
Additions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。主要研究领域为运筹学与生物信息学，目前主要研究兴趣是癌症基因组学、表观遗传学和网络生物学。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊ISRN Applied Mathematics 和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight Track，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。
Deletions:
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊ISRN Applied Mathematics 和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight Track，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。

Revision [6546]

Edited on 2013-05-09 10:07:35 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is an Associate Professor Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 30 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.
张世华副研究员于2008年6月在中国科学院数学与系统科学研究院获得运筹学与控制论专业博士学位，并留所工作至今。曾经到美国南加州大学、美国加州大学洛杉矶分校、新加坡国立大学等研究机构访问学习。目前担任国际期刊ISRN Applied Mathematics 和Frontiers in Statistical Genetics and Methodology的编委，以及多个学术会议的程序委员会成员；发起组织“数学、计算机与生命科学交叉研究青年学者论坛”和IEEE ISB会议的Highlight Track，并分别任（共同）主席。曾经荣获2013年度中国科学院卢嘉锡青年人才奖、2010年度全国百篇优秀博士论文奖、2008年度中国科学院院长奖特别奖等；入选“陈景润未来之星”特殊人才计划（2011年）和“中国科学院青年创新促进会”（2011 年），并任数理分会会长。
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is an Associate Professor Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 30 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.

Revision [6521]

Edited on 2013-04-23 12:54:25 by ShihuaZhang
Additions:
~- Lu Jia-Xi Young Investigator Award, 2013.
~- Youth Innovation Promotion Association Member (2011--2014).
~- Chen Jingrun Future Star (2011--2013).
Deletions:
~- Lu Jia-Xi Young Investigator Award (2013)
~- Youth Innovation Promotion Association Member (2011--2014)
~- Chen Jingrun Future Star (2011--2013)

Revision [6516]

Edited on 2013-04-16 10:53:46 by ShihuaZhang
Additions:
~- Lu Jia-Xi Young Investigator Award (2013)

Revision [6514]

Edited on 2013-04-14 14:33:46 by ShihuaZhang
Additions:
~~& Bioinformatics, (2012), 28(19): 2458-2466. doi: 10.1093/bioinformatics/bts476. {{files download="sMBPLS.zip" text="Code"}}[[http://bioinformatics.oxfordjournals.org/content/28/19/2458 PDF]][[http://zhoulab.usc.edu/sMBPLS/ Materials]]
Deletions:
~~& Bioinformatics, (2012), 28(19): 2458-2466. doi: 10.1093/bioinformatics/bts476. [[http://bioinformatics.oxfordjournals.org/content/28/19/2458 PDF]]

Revision [6513]

Edited on 2013-04-14 14:29:57 by ShihuaZhang
Additions:
~~& Bioinformatics (ISMB2011), 2011, 27:i401-i409. {{files download="jNMF.zip" text="Code"}} [[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 PDF]] [[http://zhoulab.usc.edu/SNMNMF/ Materials]]
Deletions:
~~& Bioinformatics (ISMB2011), 2011, 27:i401-i409. {{files download="jNMF.zip" text="Code"}} [[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 PDF]]

Revision [6512]

Edited on 2013-04-14 14:24:03 by ShihuaZhang
Additions:
~~& Bioinformatics (ISMB2011), 2011, 27:i401-i409. {{files download="jNMF.zip" text="Code"}} [[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 PDF]]
Deletions:
~~& Bioinformatics (ISMB2011), 2011, 27:i401-i409. [[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 PDF]]

Revision [6224]

Edited on 2013-03-06 19:15:59 by ShihuaZhang
Additions:
~-Bioinformatics and Computational Biology
~~&Cancer genomics
~~&Computational epigenomics
~~&Network biology
~~&High-throughput biological data analysis
~~&Structural bionformatics: protein structures comparison and assembly determination
Deletions:
~-Bioinformatics/Systems Biology
~~&Modeling and algorithms for molecular networks
~~&Integrative analysis of molecular networks with other biological data
~~&Algorithms for protein structures comparison and assemblies determination
~~&Modeling and algorithms for integration of multiple 'omic' data
~~&Computational methods for epigenomics

Revision [6222]

Edited on 2013-03-06 19:07:29 by ShihuaZhang
Additions:
~-10/2012 - 2/2013, Visiting Research Fellow.
Deletions:
~-10/2011 - 12/2011, Visiting Research Fellow.

Revision [6221]

Edited on 2013-03-06 19:05:29 by ShihuaZhang
Additions:
==={{color fg="white" bg="gray" text="Research Experience"}}===
~-10/2011 - 12/2011, Visiting Research Fellow.
~~&[[http://ww1.math.nus.edu.sg/ Department of Mathematics]], National University of Singapore, Singapore.
~-10/2011 - 12/2011, Visiting Scholar.
~~&[[https://www.ipam.ucla.edu/ Institute for Pure and Applied Mathematics (IPAM)]], University of California at Los Angeles, USA.

Revision [6220]

Edited on 2013-03-06 18:56:59 by ShihuaZhang
Additions:
Associate Professor
Institute of Applied Mathematics,
Academy of Mathematics and Systems Science,
Chinese Academy of Science
Deletions:
Associate Professor of Institute of Applied Mathematics, \\
Academy of Mathematics and Systems Science, CAS

Revision [6219]

Edited on 2013-03-06 18:56:03 by ShihuaZhang
Additions:
Associate Professor of Institute of Applied Mathematics, \\
Academy of Mathematics and Systems Science, CAS
Deletions:
Associate Professor of Institute of Applied Mathematics, Academy of Mathematics and Systems Science, CAS

Revision [6218]

Edited on 2013-03-06 18:54:52 by ShihuaZhang
Additions:
~~& Institute of Applied Mathematics, [[http://www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science (Beijing, China).
~~& Institute of Applied Mathematics, [[http://www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science (Beijing, China).
Deletions:
~~& [[http://www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science (Beijing, China).
~~& [[http://www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science (Beijing, China).

Revision [6217]

Edited on 2013-03-06 18:53:52 by ShihuaZhang
Additions:
Associate Professor of Institute of Applied Mathematics, Academy of Mathematics and Systems Science, CAS
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is an Associate Professor Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 30 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.
~- 3/2013 - present, Associate Professor.
~- 6/2008 - 2/2013, Assistant Professor.
Deletions:
Assistant Professor of Academy of Mathematics and Systems Science, CAS
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is Assistant Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 30 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.
~- 6/2008 - present, Assistant Professor.

Revision [6139]

Edited on 2012-12-29 22:43:37 by ShihuaZhang
Additions:
~- Discovery of cell-type specific regulatory elements in the human genome by differential chromatin modification analysis.
Deletions:
~- Identification and characterization of cell-type specific regulatory elements in the human genome by differential chromatin modification analysis.

Revision [6136]

Edited on 2012-12-26 21:58:08 by ShihuaZhang
Additions:
~~& In submission. {{files download="dCMA.rar" text="Code"}}
Deletions:
~~& In submission.

Revision [6135]

Edited on 2012-12-26 21:55:08 by ShihuaZhang
Additions:
~- Identification and characterization of cell-type specific regulatory elements in the human genome by differential chromatin modification analysis.
Deletions:
~- Discover cell-type specific regulatory elements in the human genome by differential chromatin modification analysis.

Revision [6131]

Edited on 2012-12-16 22:32:55 by ShihuaZhang
Additions:
~~& Junhua Zhang^, __Shihua Zhang__^, Yong Wang, Xiang-Sun Zhang (^Corresponding author).
Deletions:
~~& Junhua Zhang^, __Shihua Zhang__^, Yong Wang, Xiang-Sun Zhang.

Revision [6130]

Edited on 2012-12-16 22:31:53 by ShihuaZhang
Additions:
~- Discover cell-type specific regulatory elements in the human genome by differential chromatin modification analysis.
~~& Chen Chen*,__Shihua Zhang__*^, Xiang-Sun Zhang (*Co-first authors; ^Corresponding author).
~~& In submission.
~- Integrating somatic mutation, copy number variation, and gene expression data to identify mutated core modules in cancers.
~~& Junhua Zhang^, __Shihua Zhang__^, Yong Wang, Xiang-Sun Zhang.
~~& Submitted to BMC Systems Biology.

Revision [6103]

Edited on 2012-11-16 22:29:39 by ShihuaZhang
Additions:
==={{color fg="white" bg="gray" text="Grants"}}===
~- NSFC No. 11001256, 2011-2013 (PI)
~- NSFC No. 11131009, 2012-2016 (Co-PI)
~- Special Presidential Prize Foundation from CAS, No.4310900, 2010-2012 (PI)
~- Youth Innovation Promotion Association Foundation of CAS, 2011-2014 (PI)
Deletions:
==={{color fg="white" bg="gray" text="Research Projects"}}===
~-Research on Some Important Problems in Bioinformatics (2005-2008)
~~& Important Direction Research Grant, Chinese Academy of Sciences (CAS), Joint Investigator.
~- Research on Models and Algorithms of Haplotype Inference Problem in Bioinformatics (2006-2008).
~~& National Natural Science Foundation of China (NSFC), Grant No. 60503004, Joint Inverstigator
~-Research on theory and algorithms of community detection in complex networks (2008-2010)
~~& National Natural Science Foundation of China (NSFC), Grant No. 10701080, Joint Investigator

Revision [6102]

Edited on 2012-11-16 11:36:49 by ShihuaZhang
Additions:
~- National Excellent PhD thesis Award, 2010. [[http://www.cdgdc.edu.cn/xwyyjsjyxx/zlpj/pgpsdtxx/267995.shtml link]]
~- Excellent PhD thesis Award of CAS, 2009. [[http://www.pe.cas.cn/jypx/qgyxbsxwlw/200909/t20090921_2513751.html link]]
~- Special Presidential Prize of CAS, 2008. [[http://www.sciencenet.cn/htmlnews/2008/5/207177.html link]]
Deletions:
~- [[http://www.cdgdc.edu.cn/xwyyjsjyxx/zlpj/pgpsdtxx/267995.shtml National Excellent PhD thesis Award]], 2010.
~- [[http://www.pe.cas.cn/jypx/qgyxbsxwlw/200909/t20090921_2513751.html Excellent PhD thesis Award of Chinese Academy of Science]], 2009.
~- [[http://www.sciencenet.cn/htmlnews/2008/5/207177.html Special Presidential Prize of Chinese Academy of Science]], 2008.

Revision [6101]

Edited on 2012-11-16 11:31:45 by ShihuaZhang

No Differences

Revision [6100]

Edited on 2012-11-16 11:30:07 by ShihuaZhang
Additions:
~- Youth Innovation Promotion Association Member (2011--2014)
~- Chen Jingrun Future Star (2011--2013)
~- [[http://www.sciencenet.cn/htmlnews/2008/5/207177.html Special Presidential Prize of Chinese Academy of Science]], 2008.
Deletions:
~- [[http://www.sciencenet.cn/htmlnews/2008/5/207177.html Top Grade Presidential Award of Chinese Academy of Science]], 2008.
~- BHPB Scholarship of Graduate University of Chinese Academy of Science, 2007.
~- Baojie Excellent PhD student Scholarship of Chinese Academy of Science, 2007.
~- Baogang Scholarship, 2003.

Revision [6099]

Edited on 2012-11-12 22:05:11 by ShihuaZhang
Additions:
~~& Bioinformatics (2012) 28(22): 2940-2947. doi: 10.1093/bioinformatics/bts564. {{files download="MDPFinder.rar" text="Code"}} [[http://bioinformatics.oxfordjournals.org/content/early/2012/09/14/bioinformatics.bts564.abstract?keytype=ref&ijkey=jTZqXD6CglnPsUI PDF]]
Deletions:
~~& Bioinformatics, (2012), doi: 10.1093/bioinformatics/bts564. {{files download="MDPFinder.rar" text="Code"}} [[http://bioinformatics.oxfordjournals.org/content/early/2012/09/14/bioinformatics.bts564.abstract?keytype=ref&ijkey=jTZqXD6CglnPsUI PDF]]

Revision [6098]

Edited on 2012-11-03 17:00:12 by ShihuaZhang
Additions:
~~& Bioinformatics, (2012), 28(19): 2458-2466. doi: 10.1093/bioinformatics/bts476. [[http://bioinformatics.oxfordjournals.org/content/28/19/2458 PDF]]
Deletions:
~~& Bioinformatics, (2012), doi: 10.1093/bioinformatics/bts476. [[http://bioinformatics.oxfordjournals.org/content/early/2012/08/03/bioinformatics.bts476.abstract PDF]]

Revision [6097]

Edited on 2012-11-03 16:58:25 by ShihuaZhang
Additions:
~~& Nucleic Acids Research, (2012), 40(19): 9379-9391. doi: 10.1093/nar/gks725. [[http://nar.oxfordjournals.org/content/40/19/9379 PDF]]
Deletions:
~~& Nucleic Acids Research, (2012), 40(19): 9379-9391. doi: 10.1093/nar/gks725. [[http://nar.oxfordjournals.org/content/early/2012/08/07/nar.gks725.abstract PDF]]

Revision [6096]

Edited on 2012-11-03 16:57:09 by ShihuaZhang
Additions:
~~& Nucleic Acids Research, (2012), 40(19): 9379-9391. doi: 10.1093/nar/gks725. [[http://nar.oxfordjournals.org/content/early/2012/08/07/nar.gks725.abstract PDF]]
Deletions:
~~& Nucleic Acids Research, (2012), doi: 10.1093/nar/gks725. [[http://nar.oxfordjournals.org/content/early/2012/08/07/nar.gks725.abstract PDF]]

Revision [6057]

Edited on 2012-09-15 13:32:20 by ShihuaZhang
Additions:
~~& Bioinformatics, (2012), doi: 10.1093/bioinformatics/bts564. {{files download="MDPFinder.rar" text="Code"}} [[http://bioinformatics.oxfordjournals.org/content/early/2012/09/14/bioinformatics.bts564.abstract?keytype=ref&ijkey=jTZqXD6CglnPsUI PDF]]
Deletions:
~~& Bioinformatics, (2012), doi: 10.1093/bioinformatics/bts564. {{files download="MDPFinder.rar" text="Code"}}

Revision [6055]

Edited on 2012-09-13 17:27:24 by ShihuaZhang
Additions:
~~& Bioinformatics, (2012), doi: 10.1093/bioinformatics/bts564. {{files download="MDPFinder.rar" text="Code"}}
Deletions:
~~& Bioinformatics, 2012 (minor revision). {{files download="MDPFinder.rar" text="Code"}}

Revision [6006]

Edited on 2012-08-14 12:27:25 by ShihuaZhang
Additions:
~~& Bioinformatics, 2012 (minor revision). {{files download="MDPFinder.rar" text="Code"}}
Deletions:
~~& Submitted to Bioinformatics, 2012. {{files download="MDPFinder.rar" text="Code"}}

Revision [6005]

Edited on 2012-08-11 20:18:22 by ShihuaZhang
Additions:
~~& Nucleic Acids Research, (2012), doi: 10.1093/nar/gks725. [[http://nar.oxfordjournals.org/content/early/2012/08/07/nar.gks725.abstract PDF]]
~~& Bioinformatics, (2012), doi: 10.1093/bioinformatics/bts476. [[http://bioinformatics.oxfordjournals.org/content/early/2012/08/03/bioinformatics.bts476.abstract PDF]]
Deletions:
~~& Nucleic Acids Research, in press, 2012.
~~& Bioinformatics, in press, 2012. [[http://bioinformatics.oxfordjournals.org/content/early/recent pdf]]

Revision [6003]

Edited on 2012-08-07 12:58:03 by ShihuaZhang
Additions:
~~& Bioinformatics, in press, 2012. [[http://bioinformatics.oxfordjournals.org/content/early/recent pdf]]
Deletions:
~~& Bioinformatics, in press, 2012.

Revision [5960]

Edited on 2012-07-06 23:32:34 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is Assistant Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics, Computational Biology and Network Science, particularly in Cancer Genomics and Network Biology. He has published over 30 technical papers in the refereed journals and conference proceedings such as in Bioinformatics (including two ISMB papers), PLoS Computational Biology, Nucleic Acids Research, Proteomics, Plos ONE, BMC Systems Biology, BMC Bioinformatics, Physical Review E.
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is Assistant Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 30 technical papers in the refereed journals and conference proceedings such as in Proteomics, Bioinformatics, PLoS Comput. Bio., Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.

Revision [5959]

Edited on 2012-07-06 23:21:25 by ShihuaZhang
Additions:
~~& Nucleic Acids Research, in press, 2012.
~- Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.
~~& Bioinformatics, in press, 2012.
Deletions:
~~& In submission, 2011.
~- Discovering multi-dimensional regulatory modules by a sparse multi-block partial least square regression method.
~~& Bioinformatics, in revision, 2012.

Revision [5951]

Edited on 2012-06-16 19:52:01 by ShihuaZhang
Additions:
~~& Submitted to Bioinformatics, 2012. {{files download="MDPFinder.rar" text="Code"}}
Deletions:
~~& Submitted to Bioinformatics, 2012. {{files download="MDPFinder.rar" text="Code"}}]]

Revision [5950]

Edited on 2012-06-16 19:51:05 by ShihuaZhang
Additions:
==={{color fg="white" bg="gray" text="Attachments"}}===

Revision [5949]

Edited on 2012-06-16 19:50:04 by ShihuaZhang
Additions:
~~& Submitted to Bioinformatics, 2012. {{files download="MDPFinder.rar" text="Code"}}]]
Deletions:
~~& Submitted to Bioinformatics, 2012. [[{{files download="MDPFinder.rar" text="Code"}}]]

Revision [5948]

Edited on 2012-06-16 19:49:24 by ShihuaZhang
Additions:
~~& Submitted to Bioinformatics, 2012. [[{{files download="MDPFinder.rar" text="Code"}}]]
Deletions:
~~& Submitted to Bioinformatics, 2012. {{files download="MDPFinder.rar" text="Code"}}

Revision [5947]

Edited on 2012-06-16 19:45:43 by ShihuaZhang
Additions:
~~& Submitted to Bioinformatics, 2012. {{files download="MDPFinder.rar" text="Code"}}
Deletions:
~~& Submitted to Bioinformatics, 2012. [[ Code]]

Revision [5946]

Edited on 2012-06-16 19:37:24 by ShihuaZhang

No Differences

Revision [5945]

Edited on 2012-06-16 19:32:33 by ShihuaZhang
Additions:
~-"People can be divided into three classes, the few who make things happen, the many who watch things happen, and the overwhelming majority who have no idea what has happened."
{{files}}
Last updated: 6/30/12
Deletions:
~-"People can be divided into three classes, the few who make things happen, the many who watch things happen, and the overwhelming majority who have no idea what has happened."

Revision [5944]

Edited on 2012-06-15 22:19:07 by ShihuaZhang
Additions:
~- Efficient methods for identifying mutated driver pathways in cancer.
~~& Junfei Zhao*, __Shihua Zhang__*^, Ling-Yun Wu, Xiang-Sun Zhang (*Co-first authors; ^Corresponding author).
~~& Submitted to Bioinformatics, 2012. [[ Code]]

Revision [5909]

Edited on 2012-05-10 23:45:42 by ShihuaZhang
Additions:
~~&[[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html European Physical Journal B]], 57, 67-74, 2007.
Deletions:
~~[[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html European Physical Journal B]], 57, 67-74, 2007.

Revision [5908]

Edited on 2012-05-10 23:44:31 by ShihuaZhang
Additions:
~~[[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html European Physical Journal B]], 57, 67-74, 2007.
Deletions:
~~-[[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html European Physical Journal B]], 57, 67-74, 2007.

Revision [5907]

Edited on 2012-05-10 23:42:36 by ShihuaZhang
Additions:
~- Discovery of multi-dimensional modules by integrative analysis of cancer genomic data.
Deletions:
~- A joint matrix factorization framework for the integrative analysis of multi-dimensional genomic data.

Revision [5906]

Edited on 2012-05-10 23:39:58 by ShihuaZhang

No Differences

Revision [5905]

Edited on 2012-05-10 23:39:18 by ShihuaZhang
Additions:
~~& Bioinformatics, in revision, 2012.

Revision [5904]

Edited on 2012-05-10 23:37:35 by ShihuaZhang
Additions:
~- Common community Structure in Time-varying Networks.
~~& [[http://pre.aps.org/abstract/PRE/v85/i5/e056110 Physical Review E]], 85, 056110, 2012. e-print:[[http://arxiv.org/abs/1111.1365v2 arXiv:1111.1365v2]].
Deletions:
~- Co-community Structure in Time-varying Networks.
~~& Preprint: [[http://arxiv.org/abs/1111.1365v2 arXiv:1111.1365v2]]. In submission, 2012.

Revision [5841]

Edited on 2012-02-05 02:33:48 by ShihuaZhang
Additions:
====== Shihua Zhang ======
See me on [[http://scholar.google.com/citations?hl=en&user=81AqAAYAAAAJ Google Scholar]] or [[http://www.researcherid.com/ProfileView.action?queryString=KG0UuZjN5WlbNDYeE9y49KKU1f%2FTG%2B4MHO2msi8BW3A%3D&SrcApp=CR&returnCode=ROUTER.Unauthorized& ISI]]
Deletions:
====== Shihua Zhang [[http://scholar.google.com/citations?hl=en&user=81AqAAYAAAAJ Google Scholar]] ======

Revision [5840]

Edited on 2012-02-05 02:30:44 by ShihuaZhang
Additions:
====== Shihua Zhang [[http://scholar.google.com/citations?hl=en&user=81AqAAYAAAAJ Google Scholar]] ======
Deletions:
====== Shihua Zhang ======

Revision [5835]

Edited on 2012-01-19 12:52:53 by ShihuaZhang
Additions:
~- Co-community Structure in Time-varying Networks.
~~& __Shihua Zhang__, Junfei Zhao, Xiang-Sun Zhang.
~~& Preprint: [[http://arxiv.org/abs/1111.1365v2 arXiv:1111.1365v2]]. In submission, 2012.
~- A joint matrix factorization framework for the integrative analysis of multi-dimensional genomic data.
Deletions:
~1) A joint matrix factorization framework for the integrative analysis of multi-dimensional genomic data.

Revision [5663]

Edited on 2011-11-01 14:10:51 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is Assistant Professor of the Institute of Applied Mathematics, Academy of Mathematics and Systems Science, at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 30 technical papers in the refereed journals and conference proceedings such as in Proteomics, Bioinformatics, PLoS Comput. Bio., Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is Assistant Professor of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 30 technical papers in the refereed journals and conference proceedings such as in Proteomics, Bioinformatics, PLoS Comput. Bio., Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.

Revision [5500]

Edited on 2011-08-18 19:49:00 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is Assistant Professor of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 30 technical papers in the refereed journals and conference proceedings such as in Proteomics, Bioinformatics, PLoS Comput. Bio., Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is Assistant Professor of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 20 technical papers in the refereed journals and conference proceedings such as in Proteomics, Bioinformatics, PLoS Comput. Bio., Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.

Revision [5411]

Edited on 2011-06-19 16:04:54 by ShihuaZhang
Additions:
~- Discovering multi-dimensional regulatory modules by a sparse multi-block partial least square regression method.
Deletions:
~- Discovering multi-dimensional regulatory modules by a sparse multi-block partial least square regression method

Revision [5410]

Edited on 2011-06-19 16:03:14 by ShihuaZhang
Additions:
~~& Bioinformatics (ISMB2011), 2011, 27:i401-i409. [[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 PDF]]
Deletions:
~~& Bioinformatics (ISMB2011), 2011, 27:i401-i409.

Revision [5409]

Edited on 2011-06-19 16:02:08 by ShihuaZhang
Additions:
~~& Journal of Structural Biology, 2011, 173(3):483-496. [[http://www.ncbi.nlm.nih.gov/pubmed/21094684 PDF]]
Deletions:
~~& Journal of Structural Biology, 2011, 173(3):483-496. [http://www.ncbi.nlm.nih.gov/pubmed/21094684 PDF]

Revision [5404]

Edited on 2011-06-19 12:35:45 by ShihuaZhang
Additions:
~~& Bioinformatics (ISMB2011), 2011, 27:i401-i409.
Deletions:
~~& Bioinformatics (ISMB2011), 2011, xxx:ixxx-ixxx. In press.

Revision [5200]

Edited on 2011-03-19 21:51:24 by ShihuaZhang
Additions:
~~& Wenyuan Li*, __Shihua Zhang__*, Chun-Chi Liu, Xianghong Jasmine Zhou (*Co-first authors).
Deletions:
~~& Wenyuan Li*, __Shihua Zhang__*, Chun-Chi Liu, Xianghong Jasmine Zhou

Revision [5198]

Edited on 2011-03-15 14:55:49 by ShihuaZhang
Additions:
~~& Bioinformatics (ISMB2011), 2011, xxx:ixxx-ixxx. In press.
Deletions:
~~& In submission, 2011.

Revision [5195]

Edited on 2011-03-09 21:58:50 by ShihuaZhang
Additions:
~~& Journal of Structural Biology, 2011, 173(3):483-496. [http://www.ncbi.nlm.nih.gov/pubmed/21094684 PDF]
Deletions:
~~& Journal of Structural Biology, in press. [http://www.ncbi.nlm.nih.gov/pubmed/21094684 PDF]

Revision [5181]

Edited on 2011-03-09 17:19:40 by ShihuaZhang
Additions:
''Tel:'' 86-10-62616670
Deletions:
''Tel:'' 86-10-62571860

Revision [5179]

Edited on 2011-03-09 17:10:45 by ShihuaZhang
Additions:
~~& __Shihua Zhang__, Chun-Chi Liu, Wenyuan Li, Hui Shen, Peter Laird, Xianghong Jasmine Zhou.
Deletions:
~~& __Shihua Zhang__, Chun-Chi Liu, Wenyuan Li, xxxxx xxxx, xxxx xxxx, Xianghong Jasmine Zhou.
~~& In preparation, 2011.

Revision [5125]

Edited on 2011-01-21 13:53:14 by ShihuaZhang
Additions:
~- [[http://www.cdgdc.edu.cn/xwyyjsjyxx/zlpj/pgpsdtxx/267995.shtml National Excellent PhD thesis Award]], 2010.
Deletions:
~- [[http://www.pe.cas.cn/jypx/qgyxbsxwlw/200909/t20090921_2513751.html National Excellent PhD thesis Award]], 2010.

Revision [5124]

Edited on 2011-01-18 10:37:07 by ShihuaZhang
Additions:
==={{color fg="white" bg="gray" text="Honors and Awards"}}===
~- [[http://www.pe.cas.cn/jypx/qgyxbsxwlw/200909/t20090921_2513751.html National Excellent PhD thesis Award]], 2010.
Deletions:
==={{color fg="white" bg="gray" text="Selected Honors and Awards"}}===

Revision [5123]

Edited on 2011-01-18 10:35:51 by ShihuaZhang
Additions:
~~& In preparation, 2011.
~~& In submission, 2011.
~~& In submission, 2011.
Deletions:
~~& In preparation.
~~& In submission.
~~& In submission.

Revision [5112]

Edited on 2011-01-18 09:46:32 by ShihuaZhang
Additions:
[[http://zhangroup.aporc.org/ZhangShihua Chinese Page]]
====== Shihua Zhang ======
Deletions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua Chinese Page]]======

Revision [5109]

Edited on 2011-01-18 08:15:11 by ShihuaZhang
Additions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua Chinese Page]]======
Deletions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua __Chinese Page__]]======

Revision [5108]

Edited on 2011-01-18 08:14:17 by ShihuaZhang
Additions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua __Chinese Page__]]======
Deletions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua __[Chinese Page]__]]======

Revision [5107]

Edited on 2011-01-18 08:14:05 by ShihuaZhang
Additions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua __[Chinese Page]__]]======
Deletions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua [__Chinese Page__]]]======

Revision [5106]

Edited on 2011-01-18 08:13:45 by ShihuaZhang
Additions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua [__Chinese Page__]]]======
Deletions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua Chinese]]======

Revision [5105]

Edited on 2011-01-18 08:13:13 by ShihuaZhang
Additions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua Chinese]]======
Deletions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua Chinese]======

Revision [5104]

Edited on 2011-01-18 08:13:02 by ShihuaZhang
Additions:
====== Shihua Zhang [[http://zhangroup.aporc.org/ZhangShihua Chinese]======
Deletions:
====== Shihua Zhang [Chinese http://zhangroup.aporc.org/ZhangShihua]======

Revision [5103]

Edited on 2011-01-18 08:09:15 by ShihuaZhang
Additions:
====== Shihua Zhang [Chinese http://zhangroup.aporc.org/ZhangShihua]======
Deletions:
====== Shihua Zhang [http://zhangroup.aporc.org/ZhangShihua Chinese]======

Revision [5102]

Edited on 2011-01-18 08:08:51 by ShihuaZhang
Additions:
====== Shihua Zhang [http://zhangroup.aporc.org/ZhangShihua Chinese]======
Deletions:
====== Shihua Zhang ======
====== 张世华 ======

Revision [5100]

Edited on 2011-01-18 07:27:25 by ShihuaZhang
Additions:
~1) A joint matrix factorization framework for the integrative analysis of multi-dimensional genomic data.
~~& __Shihua Zhang__, Chun-Chi Liu, Wenyuan Li, xxxxx xxxx, xxxx xxxx, Xianghong Jasmine Zhou.
~~& In preparation.
Deletions:
~1) A fast mathematical programming procedure for simultaneous fitting of assembly components into cryo-EM density maps.
~~&

Revision [5099]

Edited on 2011-01-18 07:22:20 by ShihuaZhang
Additions:
~~&
~- A novel computational framework for simultaneous integration of multiple functional genomic data to identify microRNA-gene regulatory modules.
~~& __Shihua Zhang__, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou
~~& In submission.
~- Discovering multi-dimensional regulatory modules by a sparse multi-block partial least square regression method
~~& Wenyuan Li*, __Shihua Zhang__*, Chun-Chi Liu, Xianghong Jasmine Zhou
~~& In submission.

Revision [5098]

Edited on 2011-01-18 04:15:53 by ShihuaZhang
Additions:
~~& Journal of Structural Biology, in press. [http://www.ncbi.nlm.nih.gov/pubmed/21094684 PDF]
Deletions:
~~& Journal of Structural Biology, in press.

Revision [5097]

Edited on 2011-01-18 04:14:31 by ShihuaZhang
Additions:
~- Exploring the spatial and temporal organization of a cell’s proteome
Deletions:
~~- Exploring the spatial and temporal organization of a cell’s proteome

Revision [5096]

Edited on 2011-01-18 04:14:04 by ShihuaZhang
Additions:
~~- Exploring the spatial and temporal organization of a cell’s proteome
~~& Martin Beck, Maya Topf, Zachary Frazier, Harianto Tjong, Min Xu, __Shihua Zhang__ and Frank Alber.
~~& Journal of Structural Biology, in press.

Revision [5095]

Edited on 2011-01-18 04:10:30 by ShihuaZhang
Additions:
~- A fast mathematical programming procedure for simultaneous fitting of assembly components into cryo-EM density maps.

Revision [5094]

Edited on 2011-01-18 04:09:39 by ShihuaZhang
Additions:
~~& BMC Systems Biology, 2010, 4:S10.
Deletions:
~~& BMC Systems Biology, in press.

Revision [5093]

Edited on 2011-01-17 06:09:32 by ShihuaZhang
Additions:
~-7/2008 - 12/2010, Postdoctoral Fellow.
Deletions:
~-7/2008 - present, Postdoctoral Fellow.

Revision [4787]

Edited on 2010-08-05 06:55:16 by ShihuaZhang
Additions:
~~& BMC Systems Biology, in press.
Deletions:
~~& BMC Systems Biology (OSB09), in press.

Revision [4770]

Edited on 2010-06-12 06:20:31 by ShihuaZhang
Additions:
~- Biomolecular network querying: a promising approach in systems biology.
~~&[[http://www.biomedcentral.com/bmcsystbiol/ BMC Systems Biology]], 2008, 2:5. doi:10.1186/1752-0509-2-5. (Complementary). [[http://www.biomedcentral.com/info/about/mostviewed/ Highly accessed]]
~~&[[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18. [[http://www.biomedcentral.com/info/about/mostviewed/ Highly accessed]]
Deletions:
~- Biomolecular network querying: a promising approach in systems biology. [[http://www.biomedcentral.com/info/about/mostviewed/ Highly accessed]]
~~&[[http://www.biomedcentral.com/bmcsystbiol/ BMC Systems Biology]], 2008, 2:5. doi:10.1186/1752-0509-2-5. (Complementary).
~~&[[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.

Revision [4769]

Edited on 2010-06-12 06:15:52 by ShihuaZhang
Additions:
~- Biomolecular network querying: a promising approach in systems biology. [[http://www.biomedcentral.com/info/about/mostviewed/ Highly accessed]]
Deletions:
~- Biomolecular network querying: a promising approach in systems biology. (Highly accessed)

Revision [4768]

Edited on 2010-06-12 06:15:08 by ShihuaZhang
Additions:
~- Detecting disease associated modules and prioritizing active genes based on high throughput data.
~~& [[http://www.biomedcentral.com/1471-2105/11/26 BMC Bioinformatics]], 11:26, 2010. doi:10.1186/1471-2105-11-26. [[http://www.biomedcentral.com/info/about/mostviewed/ Highly accessed]]
Deletions:
~- Detecting disease associated modules and prioritizing active genes based on high throughput data. [[http://www.biomedcentral.com/info/about/mostviewed/ Highly accessed]]
~~& [[http://www.biomedcentral.com/1471-2105/11/26 BMC Bioinformatics]], 11:26, 2010. doi:10.1186/1471-2105-11-26.

Revision [4767]

Edited on 2010-06-12 06:14:31 by ShihuaZhang
Additions:
~~& Bioinformatics (ISMB2010), 2010, 26(12):i261-i268. [[http://f1000biology.com/article/id/3524956/evaluation Faculty of 1000 Biology]]
~- Detecting disease associated modules and prioritizing active genes based on high throughput data. [[http://www.biomedcentral.com/info/about/mostviewed/ Highly accessed]]
Deletions:
~~& Bioinformatics (ISMB2010), 2010, 26(12):i261-i268. [[http://f1000biology.com/article/id/3524956/evaluation Faculty of 1000 Biology]].
~- Detecting disease associated modules and prioritizing active genes based on high throughput data. (Highly accessed)

Revision [4766]

Edited on 2010-06-12 06:12:55 by ShihuaZhang
Additions:
~~& Bioinformatics (ISMB2010), 2010, 26(12):i261-i268. [[http://f1000biology.com/article/id/3524956/evaluation Faculty of 1000 Biology]].
Deletions:
~~& Bioinformatics (ISMB2010), 2010, 26(12):i261-i268. [http://f1000biology.com/article/id/3524956/evaluation Faculty of 1000 Biology].

Revision [4765]

Edited on 2010-06-12 06:12:24 by ShihuaZhang
Additions:
~~& Bioinformatics (ISMB2010), 2010, 26(12):i261-i268. [http://f1000biology.com/article/id/3524956/evaluation Faculty of 1000 Biology].
Deletions:
~~& Bioinformatics (ISMB2010), in press.

Revision [4718]

Edited on 2010-04-05 15:43:37 by ShihuaZhang

No Differences

Revision [4717]

Edited on 2010-04-05 15:41:35 by ShihuaZhang
Additions:
~1) A fast mathematical programming procedure for simultaneous fitting of assembly components into cryo-EM density maps.
~~& __Shihua Zhang__, Daven Vasishtan, Min Xu, Maya Topf, Frank Alber.
~~& Bioinformatics (ISMB2010), in press.
~- Determining modular organization of protein interaction networks by maximizing modularity density.
~~& __Shihua Zhang__, Xue-Mei Ning, Chris Ding, Xiang-Sun Zhang.
~~& BMC Systems Biology (OSB09), in press.
~- Detecting disease associated modules and prioritizing active genes based on high throughput data. (Highly accessed)
Deletions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data. (Highly accessed)

Revision [4705]

Edited on 2010-02-05 14:26:05 by ShihuaZhang
Additions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data. (Highly accessed)
Deletions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data. {{color fg="white" bg="blue" text="(Highly accessed)"}}

Revision [4704]

Edited on 2010-02-05 14:22:36 by ShihuaZhang
Additions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data. {{color fg="white" bg="blue" text="(Highly accessed)"}}
Deletions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data. {{color fg="white" bg="red" text="(Highly accessed)"}}

Revision [4703]

Edited on 2010-02-05 14:21:18 by ShihuaZhang
Additions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data. {{color fg="white" bg="red" text="(Highly accessed)"}}
Deletions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data. {{color fg="white" bg="gray" text="(Highly accessed)"}}

Revision [4702]

Edited on 2010-02-05 14:20:48 by ShihuaZhang
Additions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data. {{color fg="white" bg="gray" text="(Highly accessed)"}}
Deletions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data. (Highly accessed)

Revision [4701]

Edited on 2010-02-05 14:14:29 by ShihuaZhang
Additions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data. (Highly accessed)
Deletions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data.

Revision [4657]

Edited on 2010-01-14 15:25:05 by ShihuaZhang
Additions:
~~& [[http://www.biomedcentral.com/1471-2105/11/26 BMC Bioinformatics]], 11:26, 2010. doi:10.1186/1471-2105-11-26.
~~&[[http://pre.aps.org/ Physical Review E]], 76, 046103, 2007.
~~&[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V10-4TC34VB-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=10&md5=b29f71dd1b7f09ca3abc6d2f20f3ab12 Neurocomputing]], 72, 134-141, 2008.
Deletions:
~~& [[http://www.biomedcentral.com/1471-2105/11/26 BMC Bioinformatics]], 11:26 (2010). doi:10.1186/1471-2105-11-26.
~~&[[http://pre.aps.org/ Physical Review E]], 76, 046103, 2007
~~&[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V10-4TC34VB-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=10&md5=b29f71dd1b7f09ca3abc6d2f20f3ab12 Neurocomputing]], in press

Revision [4656]

Edited on 2010-01-14 15:18:07 by ShihuaZhang
Additions:
~~& [[http://www.biomedcentral.com/1471-2105/11/26 BMC Bioinformatics]], 11:26 (2010). doi:10.1186/1471-2105-11-26.
Deletions:
~~& [[http://www.biomedcentral.com/1471-2105/11/26 BMC Bioinformatics]], 11, 26 (2010). doi:10.1186/1471-2105-11-26.

Revision [4655]

Edited on 2010-01-14 15:16:40 by ShihuaZhang
Additions:
~~&Modeling and algorithms for molecular networks
~~&Integrative analysis of molecular networks with other biological data
~~&Algorithms for protein structures comparison and assemblies determination
~~&Modeling and algorithms for integration of multiple 'omic' data
~~&Computational methods for epigenomics
~-Complex networks/Network science
~~&Structure and dynamics of networks
~~& Yu-Qing Qiu*, __Shihua Zhang__*, Xiang-Sun Zhang, Luonan Chen (*Co-first authors).
Deletions:
~~&Functional modules in molecular networks
~~&Gene/transcription regulatory networks
~~&Protein interaction networks, signaling pathways
~~&Microarray data analysis
~-Complex networks
~~& Yu-Qing Qiu, __Shihua Zhang__, Xiang-Sun Zhang, Luonan Chen.

Revision [4654]

Edited on 2010-01-14 14:55:35 by ShihuaZhang
Additions:
~1) Detecting disease associated modules and prioritizing active genes based on high throughput data.
~~& Yu-Qing Qiu, __Shihua Zhang__, Xiang-Sun Zhang, Luonan Chen.
~~& [[http://www.biomedcentral.com/1471-2105/11/26 BMC Bioinformatics]], 11, 26 (2010). doi:10.1186/1471-2105-11-26.
~~& IET Systems Biology, 3(6), 475-486, 2009.
Deletions:
~1) Disease-aging network reveals significant roles of aging genes in connecting genetic diseases.
~~& IET Systems Biology, In press.

Revision [4653]

Edited on 2010-01-14 14:50:09 by ShihuaZhang
Additions:
~~& [[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000521 PLoS Computational Biology]], 5(9): e1000521. doi:10.1371/journal.pcbi.1000521.
~- Disease-aging network reveals significant roles of aging genes in connecting genetic diseases.
~~& [[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000521 PLoS Computational Biology]], 5(9): e1000521. doi:10.1371/journal.pcbi.1000521.
Deletions:
~~& [[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000521 PLoS Computational Biology]], 5(9): e1000521. doi:10.1371/journal.pcbi.1000521.~~&

Revision [4652]

Edited on 2010-01-14 14:49:15 by ShihuaZhang
Additions:
~~& [[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000521 PLoS Computational Biology]], 5(9): e1000521. doi:10.1371/journal.pcbi.1000521.~~&
Deletions:
~~& [[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000521 PLoS Computational Biology]], 5(9): e1000521. doi:10.1371/journal.pcbi.1000521.

Revision [4367]

Edited on 2009-09-29 10:57:06 by ShihuaZhang
Additions:
~- [[http://www.pe.cas.cn/jypx/qgyxbsxwlw/200909/t20090921_2513751.html Excellent PhD thesis Award of Chinese Academy of Science]], 2009.
Deletions:
~- [[http://news.gucas.ac.cn/Detail.asp?Newsid=16461&Cid=3 Excellent PhD thesis Award of Chinese Academy of Science]], 2009.

Revision [4358]

Edited on 2009-09-28 13:58:27 by ShihuaZhang
Additions:
~~& [[http://www.inderscience.com/browse/index.php?journalID=189 International Journal of Data Mining and Bioinformatics]], 3(1), 68-84, 2009.
Deletions:
~~& [[http://www.inderscience.com/browse/index.php?journalID=189 International Journal of Data Mining and Bioinformatics]], In press.

Revision [4357]

Edited on 2009-09-28 13:56:48 by ShihuaZhang
Additions:
~~& [[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000521 PLoS Computational Biology]], 5(9): e1000521. doi:10.1371/journal.pcbi.1000521.
Deletions:
~~& PLoS Computational Biology, 5(9): e1000521. doi:10.1371/journal.pcbi.1000521.

Revision [4356]

Edited on 2009-09-28 13:54:55 by ShihuaZhang
Additions:
~1) Disease-aging network reveals significant roles of aging genes in connecting genetic diseases.
Deletions:
~1) Aging genes make a significant contribution to the association between complex diseases.

Revision [4355]

Edited on 2009-09-28 13:48:32 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is Assistant Professor of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 20 technical papers in the refereed journals and conference proceedings such as in Proteomics, Bioinformatics, PLoS Comput. Bio., Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
~1) Aging genes make a significant contribution to the association between complex diseases.
~~& Ji-Guang Wang, __Shihua Zhang__, Yong Wang, Xiang-Sun Zhang, Luonan Chen.
~~& PLoS Computational Biology, 5(9): e1000521. doi:10.1371/journal.pcbi.1000521.
~- Identifying differentially expressed pathways based on a mixed integer linear programming model.
~~& Qiu Yuqing, __Shihua Zhang__, Xiang-Sun Zhang, Luonan Chen.
~~& IET Systems Biology, In press.
~- Quantitative function for community detection.
~- [[http://news.gucas.ac.cn/Detail.asp?Newsid=16461&Cid=3 Excellent PhD thesis Award of Chinese Academy of Science]], 2009.
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is Assistant Professor of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 20 technical papers in the refereed journals and conference proceedings such as in Proteomics, Bioinformatics, Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
~1) Quantitative function for community detection.

Revision [3695]

Edited on 2008-09-11 14:00:28 by ShihuaZhang
Additions:
~~&[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V10-4TC34VB-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=10&md5=b29f71dd1b7f09ca3abc6d2f20f3ab12 Neurocomputing]], in press
Deletions:
~~&[[http://www.elsevier.com/wps/find/journaldescription.cws_home/505628/description#description Neurocomputing]], in press

Revision [3648]

Edited on 2008-08-10 06:38:21 by ShihuaZhang
Deletions:
University of Southern California

Revision [3647]

Edited on 2008-08-10 06:37:46 by ShihuaZhang
Additions:
~~& [[http://www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science (Beijing, China).
~-7/2008 - present, Postdoctoral Fellow.
~~&[[http://www.cmb.usc.edu/ Program in Molecular and Computational Biology]], Department of Biological Sciences, University of Southern California (Los Angeles, USA).
University of Southern California

Revision [3646]

Edited on 2008-08-10 06:26:57 by ShihuaZhang
Additions:
~-[[http://mathworld.wolfram.com/ Mathematics resource]]

Revision [3593]

Edited on 2008-07-11 11:56:47 by ShihuaZhang
Additions:
~- 6/2008 - present, Assistant Professor.
Deletions:
~- 7/2008 - present, Assistant Professor.

Revision [3575]

Edited on 2008-06-20 22:26:03 by ShihuaZhang
Additions:
~- Baojie Excellent PhD student Scholarship of Chinese Academy of Science, 2007.

Revision [3520]

Edited on 2008-06-05 14:14:23 by ShihuaZhang
Additions:
''Address:'' No.55, Zhongguancun East road, Beijing 100190, China
Deletions:
''Address:'' No.55, Zhongguancun East road, Beijing 100080, China

Revision [3519]

Edited on 2008-06-05 14:13:20 by ShihuaZhang
Additions:
~- Baogang Scholarship, 2003.
Deletions:
~- Baogang Scholarship (2003)

Revision [3518]

Edited on 2008-06-05 14:12:03 by ShihuaZhang
Additions:
~- [[http://www.sciencenet.cn/htmlnews/2008/5/207177.html Top Grade Presidential Award of Chinese Academy of Science]], 2008.
Deletions:
~- [[Top Grade Presidential Award of Chinese Academy of Science http://www.sciencenet.cn/htmlnews/2008/5/207177.html]], 2008.

Revision [3517]

Edited on 2008-06-05 14:11:02 by ShihuaZhang
Additions:
~- [[Top Grade Presidential Award of Chinese Academy of Science http://www.sciencenet.cn/htmlnews/2008/5/207177.html]], 2008.
~- BHPB Scholarship of Graduate University of Chinese Academy of Science, 2007.
Deletions:
~- Top Grade Presidential Award of Chinese Academy of Science, 2008.
~- BHPB Scholarship of Graduate University of Chinese Academy of Science (2007)

Revision [3516]

Edited on 2008-06-05 13:07:38 by ShihuaZhang
Additions:
~- Top Grade Presidential Award of Chinese Academy of Science, 2008.
Deletions:
~- Top grade Presidential Award of Chinese Academy of Science (2008)

Revision [3515]

Edited on 2008-06-05 13:05:02 by ShihuaZhang
Additions:
~- Top grade Presidential Award of Chinese Academy of Science (2008)
~- BHPB Scholarship of Graduate University of Chinese Academy of Science (2007)

Revision [3514]

Edited on 2008-06-05 13:02:43 by ShihuaZhang
Additions:
==={{color fg="white" bg="gray" text="Selected Honors and Awards"}}===
~- Baogang Scholarship (2003)

Revision [3513]

Edited on 2008-06-05 12:56:21 by ShihuaZhang
Additions:
~- 9/2003 - 6/2008, PhD of Operational Research and Control (PhD-direct student),
Deletions:
~- 9/2003 - 7/2008, PhD of Operational Research and Control (PhD-direct student),

Revision [3512]

Edited on 2008-06-05 12:55:36 by ShihuaZhang
Additions:
~- 7/2008 - present, Assistant Professor.
Deletions:
~- 7/2008 - present, Academy of Mathematics and Systems Science, CAS.
~~& Assistant Professor

Revision [3511]

Edited on 2008-06-05 12:54:31 by ShihuaZhang
Deletions:
BOSTON UNIVERSITY, Boston, MA. 2006-present
Assistant Professor, Bioinformatics Program and Department of Chemistry

Revision [3510]

Edited on 2008-06-05 12:54:10 by ShihuaZhang
Additions:
==={{color fg="white" bg="gray" text="Positions"}}===
BOSTON UNIVERSITY, Boston, MA. 2006-present
Assistant Professor, Bioinformatics Program and Department of Chemistry
~- 7/2008 - present, Academy of Mathematics and Systems Science, CAS.
~~& Assistant Professor

Revision [3509]

Edited on 2008-06-05 12:43:33 by ShihuaZhang
Additions:
Assistant Professor of Academy of Mathematics and Systems Science, CAS
Deletions:
Academy of Mathematics and Systems Science, CAS

Revision [3504]

Edited on 2008-06-05 11:32:52 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is Assistant Professor of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 20 technical papers in the refereed journals and conference proceedings such as in Proteomics, Bioinformatics, Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
~- 9/2003 - 7/2008, PhD of Operational Research and Control (PhD-direct student),
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is a third year PhD student in Operations Research of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 20 technical papers in the refereed journals and conference proceedings such as in Proteomics, Bioinformatics, Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
~- 8/2003 - 7/2008 (expected), PhD of Operational Research and Control (PhD-direct student),

Revision [3502]

Edited on 2008-06-05 11:30:57 by ShihuaZhang
Additions:
~- 8/2003 - 7/2008 (expected), PhD of Operational Research and Control (PhD-direct student),
Deletions:
~- 8/2003 - 5/2008 (expected), PhD candidate in Operational Research and Control (PhD-direct student),

Revision [3200]

Edited on 2008-04-07 12:14:10 by ShihuaZhang

No Differences

Revision [3199]

Edited on 2008-04-07 12:06:45 by ShihuaZhang
Additions:
~- Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison.
Deletions:
~- Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison.

Revision [3198]

Edited on 2008-04-07 12:05:35 by ShihuaZhang
Additions:
~- A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.
Deletions:
~- A Hybrid Graph-Theoretic Method for Mining Overlapping Functional Modules in Large Sparse Protein Interaction Networks.

Revision [3197]

Edited on 2008-04-07 12:04:01 by ShihuaZhang

No Differences

Revision [3181]

Edited on 2008-04-02 11:40:53 by ShihuaZhang
Additions:
~~&It has been selected by [[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000015000006000091000001&idtype=cvips&gifs=Yes Virtual Journal of Biological Physics Research]], 15(6), 2008.

Revision [3160]

Edited on 2008-03-20 15:37:16 by ShihuaZhang
Additions:
~-[[http://apps.isiknowledge.com/UA_GeneralSearch_input.do?product=UA&search_mode=GeneralSearch&SID=2DOANfgOkP5@2KbHPKF&preferencesSaved= ISI Web of Knowledge]]
Deletions:
~-[[http://portal.isiknowledge.com/portal.cgi?SID=J15i5I@1B2KoA3No6I6 ISI Web of Knowledge]]

Revision [3156]

Edited on 2008-03-11 10:54:38 by ShihuaZhang
Additions:
~1) Quantitative function for community detection.
Deletions:
~1) A novel quantitative function for community detection.

Revision [3155]

Edited on 2008-03-11 10:53:59 by ShihuaZhang
Additions:
~~&[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000077000003036109000001&idtype=cvips&gifs=yes Physical Review E]], 77, 036109, 2008.
Deletions:
~~&[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000077000003036109000001&idtype=cvips&gifs=yes Physical Review E]], 77, 036109 (2008).

Revision [3154]

Edited on 2008-03-11 10:44:15 by ShihuaZhang
Additions:
~~&[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000077000003036109000001&idtype=cvips&gifs=yes Physical Review E]], 77, 036109 (2008).
Deletions:
~~&[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000077000003036109000001&idtype=cvips&gifs=yes Physical Review E]], 036109 (2008).

Revision [3153]

Edited on 2008-03-11 10:43:34 by ShihuaZhang
Additions:
~~&[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000077000003036109000001&idtype=cvips&gifs=yes Physical Review E]], 036109 (2008).
Deletions:
~~&[[http://pre.aps.org/ Physical Review E]], 2008. In press.

Revision [3132]

Edited on 2008-02-09 21:50:52 by ShihuaZhang
Additions:
~~&[[http://pre.aps.org/ Physical Review E]], 2008. In press.
Deletions:
~~&[[http://pre.aps.org/ Physical Review E]], 2008, In revisions.

Revision [3131]

Edited on 2008-02-08 17:20:42 by ShihuaZhang
Additions:
~- [[http://www.ee.columbia.edu/~marios/matlab/matlab_tricks.html Matlab tips and tricks]]

Revision [3130]

Edited on 2008-02-08 17:01:39 by ShihuaZhang
Additions:
~-"In science, the important thing is to modify and change one’s ideas as science advances." —— Herbert Spencer (1820–1903)
~-"The good life is one inspired by love and guided by knowledge." —— Betrand Russell
~-"It's not your aptitude but your attitude that determines your altitude in life." —— Jesse Jackson
~-"People can be divided into three classes, the few who make things happen, the many who watch things happen, and the overwhelming majority who have no idea what has happened."
Deletions:
~-"In science, the important thing is to modify and change one’s ideas as science advances."——Herbert Spencer (1820–1903)
~-"The good life is one inspired by love and guided by knowledge." ——Betrand Russell

Revision [3128]

Edited on 2008-02-08 10:42:34 by ShihuaZhang
Additions:
~~&[[http://pre.aps.org/ Physical Review E]], 2008, In revisions.
Deletions:
~~&[[Physical Review E]], 2008, In revisions.

Revision [3127]

Edited on 2008-02-08 10:41:09 by ShihuaZhang
Additions:
~1) A novel quantitative function for community detection.
~~& Zhenping Li*, __Shihua Zhang__*, Rui-Sheng Wang, Xiang-Sun Zhang and Luonan Chen (*Co-first authors).
~~&[[Physical Review E]], 2008, In revisions.
~- Biomolecular network querying: a promising approach in systems biology. (Highly accessed)
Deletions:
~1) Biomolecular network querying: a promising approach in systems biology. (Highly accessed)

Revision [3126]

Edited on 2008-02-04 13:28:32 by ShihuaZhang
Additions:
~1) Biomolecular network querying: a promising approach in systems biology. (Highly accessed)
Deletions:
~1) Biomolecular network querying: a promising approach in systems biology. {color fg="white" bg="gray" text="Research Interests"}
(Highly accessed)

Revision [3125]

Edited on 2008-02-04 13:28:11 by ShihuaZhang
Additions:
~1) Biomolecular network querying: a promising approach in systems biology. {color fg="white" bg="gray" text="Research Interests"}
Deletions:
~1) Biomolecular network querying: a promising approach in systems biology. {{color fg="white" bg="gray" text="Research Interests"}}

Revision [3124]

Edited on 2008-02-04 13:27:41 by ShihuaZhang
Additions:
~1) Biomolecular network querying: a promising approach in systems biology. {{color fg="white" bg="gray" text="Research Interests"}}
(Highly accessed)
Deletions:
~1) Biomolecular network querying: a promising approach in systems biology. (Highly accessed)

Revision [3123]

Edited on 2008-02-04 13:26:25 by ShihuaZhang
Additions:
~1) Biomolecular network querying: a promising approach in systems biology. (Highly accessed)
Deletions:
~1) Biomolecular network querying: a promising approach in systems biology.

Revision [3114]

Edited on 2008-01-23 18:47:02 by ShihuaZhang
Additions:
~-[[http://zhangroup.aporc.org/ShihuaZhang/Bioinformatics_Lab]]
Deletions:
Bioinformatics Lab

Revision [3113]

Edited on 2008-01-23 18:45:26 by ShihuaZhang
Additions:
Bioinformatics Lab

Revision [3112]

Edited on 2008-01-21 18:12:54 by ShihuaZhang
Additions:
~~& [[http://bioinformatics.oxfordjournals.org/ Bioinformatics]], [[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/13/1631 23(13):1631-1639, 2007; doi:10.1093/bioinformatics/btm156]].
Deletions:
~~& [[http://bioinformatics.oxfordjournals.org/ Bioinformatics]], [[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm156v1 Bioinformatics 23(13):1631-1639, 2007; doi:10.1093/bioinformatics/btm156]].

Revision [3111]

Edited on 2008-01-21 18:12:17 by ShihuaZhang
Additions:
~~& [[http://bioinformatics.oxfordjournals.org/ Bioinformatics]], [[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm156v1 Bioinformatics 23(13):1631-1639, 2007; doi:10.1093/bioinformatics/btm156]].
Deletions:
~~& [[http://bioinformatics.oxfordjournals.org/ Bioinformatics]], [[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm156v1 doi:10.1093/bioinformatics/btm156]].

Revision [3110]

Edited on 2008-01-21 18:09:31 by ShihuaZhang
Additions:
~~&[[http://www.biomedcentral.com/bmcsystbiol/ BMC Systems Biology]], 2008, 2:5. doi:10.1186/1752-0509-2-5. (Complementary).
Deletions:
~~&[[http://www.biomedcentral.com/bmcsystbiol/ BMC Systems Biology]], In press (Complementary).

Revision [3002]

Edited on 2007-12-21 22:34:04 by ShihuaZhang
Additions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A: Statistical Mechanics and its Applictions]], 2008, 387(7), 1675-1682. [[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 doi:10.1016/j.physa.2007.10.061]].
Deletions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A: Statistical Mechanics and its Applictions]], 2008, 387(7), 1675-1682, [[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 doi:10.1016/j.physa.2007.10.061]]

Revision [3001]

Edited on 2007-12-21 22:33:32 by ShihuaZhang
Additions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A: Statistical Mechanics and its Applictions]], 2008, 387(7), 1675-1682, [[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 doi:10.1016/j.physa.2007.10.061]]
Deletions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A: Statistical Mechanics and its Applictions]], 2008, 387(7), 1675-1682,
[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 doi:10.1016/j.physa.2007.10.061]]

Revision [3000]

Edited on 2007-12-21 22:32:57 by ShihuaZhang
Additions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A: Statistical Mechanics and its Applictions]], 2008, 387(7), 1675-1682,
[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 doi:10.1016/j.physa.2007.10.061]]
Deletions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A]], [[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 doi:10.1016/j.physa.2007.10.061]]

Revision [2975]

Edited on 2007-12-13 14:38:03 by ShihuaZhang
Additions:
~~&[[http://www.biomedcentral.com/bmcsystbiol/ BMC Systems Biology]], In press (Complementary).
Deletions:
~~&[[BMC Systems Biology]], In press (Complementary).

Revision [2974]

Edited on 2007-12-13 14:21:08 by ShihuaZhang
Additions:
~~&[[BMC Systems Biology]], In press (Complementary).
Deletions:
~~&[[ BMC Systems Biology]], In press (Complementary).

Revision [2973]

Edited on 2007-12-13 14:20:04 by ShihuaZhang
Additions:
~~&[[ BMC Systems Biology]], In press (Complementary).
Deletions:
~~&[[BMC Systems Biology]], In press (Complementary).

Revision [2972]

Edited on 2007-12-13 14:19:28 by ShihuaZhang
Additions:
~1) Biomolecular network querying: a promising approach in systems biology.
~~&__Shihua Zhang__, Xiang-Sun Zhang and Luonan Chen.
~~&[[BMC Systems Biology]], In press (Complementary).
~- Discovering functions and revealing mechanisms at molecular level from biological networks.
Deletions:
~1) Discovering functions and revealing mechanisms at molecular level from biological networks.

Revision [2966]

Edited on 2007-12-05 11:20:09 by ShihuaZhang
Additions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A]], [[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 doi:10.1016/j.physa.2007.10.061]]
Deletions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A]], [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 doi:10.1016/j.physa.2007.10.061]

Revision [2965]

Edited on 2007-12-05 11:19:31 by ShihuaZhang
Additions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A]], [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 doi:10.1016/j.physa.2007.10.061]
Deletions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A]], [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 oi:10.1016/j.physa.2007.10.061]

Revision [2964]

Edited on 2007-12-05 11:17:53 by ShihuaZhang
Additions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A]], [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4R1KVP1-3&_user=1999482&_coverDate=11%2F01%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=729e027bf020f4a34520979ca4c47860 oi:10.1016/j.physa.2007.10.061]
Deletions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A]], In press.

Revision [2955]

Edited on 2007-11-22 12:03:15 by ShihuaZhang
Additions:
~~& [[http://www.plosone.org/article/fetchArticle.action?articleURI=info:doi/10.1371/journal.pone.0001207 PLoS ONE]] 2(11): e1207, 2007. doi:10.1371/journal.pone.0001207.
Deletions:
~~& [[http://www.plosone.org/article/fetchArticle.action?articleURI=info:doi/10.1371/journal.pone.0001207 PLoS ONE]] 2(11): e1207. doi:10.1371/journal.pone.0001207.

Revision [2954]

Edited on 2007-11-22 12:02:30 by ShihuaZhang
Additions:
~~& [[http://www.plosone.org/article/fetchArticle.action?articleURI=info:doi/10.1371/journal.pone.0001207 PLoS ONE]] 2(11): e1207. doi:10.1371/journal.pone.0001207.
Deletions:
~~& [[http://www.plosone.org/home.action Plos ONE]], In press.

Revision [2948]

Edited on 2007-11-16 13:16:04 by ShihuaZhang
Additions:
~-"The whole of science is nothing more than a refinement of everyday thinking." —— Albert Einstein (1879-1955)
Deletions:
~-"The whole of science is nothing more than a refinement of everyday thinking." ——Einstein

Revision [2947]

Edited on 2007-11-16 13:15:33 by ShihuaZhang
Additions:
~-"Life is like riding a bicycle. To keep your balance, you must keep moving." —— Albert Einstein (1879-1955)

Revision [2936]

Edited on 2007-11-11 20:05:26 by ShihuaZhang
Additions:
~- A Hybrid Graph-Theoretic Method for Mining Overlapping Functional Modules in Large Sparse Protein Interaction Networks.
Deletions:
~- A Hibrid Graph-Theoretic Method for Mining Overlapping Functional Modules in Large Sparse Protein Interaction Networks.

Revision [2933]

Edited on 2007-11-09 18:20:25 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is a third year PhD student in Operations Research of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 20 technical papers in the refereed journals and conference proceedings such as in Proteomics, Bioinformatics, Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is a third year PhD student in Operations Research of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 20 technical papers in the refereed journals and conference proceedings such in Proteomics, Bioinformatics, Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.

Revision [2930]

Edited on 2007-11-04 13:46:35 by ShihuaZhang
Additions:
~~&It has been selected by [[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000014000008000128000001&idtype=cvips&gifs=Yes Virtual Journal of Biological Physics Research]], 14(8), 2007.
Deletions:
~~&It has been selected by [[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000014000008000128000001&idtype=cvips&gifs=Yes Virtual Journal of Biological Physics Research]], 14(8).

Revision [2927]

Edited on 2007-11-03 21:36:10 by ShihuaZhang
Additions:
~~&It has been selected by [[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000014000008000128000001&idtype=cvips&gifs=Yes Virtual Journal of Biological Physics Research]], 14(8).
Deletions:
~~&[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000014000008000128000001&idtype=cvips&gifs=Yes Virtual Journal of Biological Physics Research]], 14(8)

Revision [2926]

Edited on 2007-11-03 21:35:19 by ShihuaZhang
Additions:
~~&[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000014000008000128000001&idtype=cvips&gifs=Yes Virtual Journal of Biological Physics Research]], 14(8)

Revision [2923]

Edited on 2007-11-01 16:10:48 by ShihuaZhang
Additions:
~~& [[http://www.plosone.org/home.action Plos ONE]], In press.
Deletions:
~~& Conditionally accepted by [[http://www.plosone.org/home.action Plos ONE]].

Revision [2898]

Edited on 2007-10-24 13:56:30 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is a third year PhD student in Operations Research of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 20 technical papers in the refereed journals and conference proceedings such in Proteomics, Bioinformatics, Plos ONE, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is a third year PhD student in Operations Research of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 15 technical papers in the refereed journals and conference proceedings such in Proteomics, Bioinformatics, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.

Revision [2897]

Edited on 2007-10-24 13:55:32 by ShihuaZhang
Additions:
~- Detecting community structure in complex networks based on a measure of information discrepancy.
~~& Junhua Zhang, __Shihua Zhang__, Xiang-Sun Zhang
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A]], In press.

Revision [2896]

Edited on 2007-10-24 13:53:55 by ShihuaZhang
Additions:
~~& Conditionally accepted by [[http://www.plosone.org/home.action Plos ONE]].
Deletions:
~~& Conditionally accepted by Plos ONE.

Revision [2895]

Edited on 2007-10-24 13:46:52 by ShihuaZhang
Additions:
~~& Guangxu Jin, __Shihua Zhang__, Xiang-Sun Zhang, Luonan Chen
Deletions:
~~& Guangxu Jin, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen

Revision [2894]

Edited on 2007-10-24 13:46:22 by ShihuaZhang
Additions:
~- Hubs with network motifs organize modularity dynamically in the protein-protein interaction network of yeast.
~~& Guangxu Jin, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen
~~& Conditionally accepted by Plos ONE.

Revision [2889]

Edited on 2007-10-20 17:49:14 by ShihuaZhang
Deletions:
~- Alignment of Protein Interaction Networks by Integer Quadratic Programming.
~~& Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen.
~~& [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].

Revision [2888]

Edited on 2007-10-20 17:48:27 by ShihuaZhang
Additions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A: Statistical Mechanics and its Applictions]], 2007, 374, 483–490
Deletions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A]], 2007, 374, 483–490

Revision [2887]

Edited on 2007-10-20 17:45:27 by ShihuaZhang
Additions:
~~-[[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html European Physical Journal B]], 57, 67-74, 2007.
Deletions:
~~-[[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html Eur. Phys. J. B]], 57, 67-74, 2007.

Revision [2886]

Edited on 2007-10-20 15:25:23 by ShihuaZhang
Additions:
~- A Hibrid Graph-Theoretic Method for Mining Overlapping Functional Modules in Large Sparse Protein Interaction Networks.
Deletions:
~- A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.

Revision [2885]

Edited on 2007-10-20 15:22:32 by ShihuaZhang
Additions:
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description#description Physica A]], 2007, 374, 483–490
Deletions:
~~& Physica A, 2007, 374, 483–490

Revision [2884]

Edited on 2007-10-20 15:21:36 by ShihuaZhang
Additions:
~~& [[http://bioinformatics.oxfordjournals.org/ Bioinformatics]], [[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm156v1 doi:10.1093/bioinformatics/btm156]].
Deletions:
~~& Bioinformatics, [[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm156v1 doi:10.1093/bioinformatics/btm156]].

Revision [2883]

Edited on 2007-10-20 15:19:49 by ShihuaZhang
Additions:
~~&[[http://www.elsevier.com/wps/find/journaldescription.cws_home/505628/description#description Neurocomputing]], in press
Deletions:
~~&Neurocomputing, in press

Revision [2882]

Edited on 2007-10-20 15:17:11 by ShihuaZhang
Additions:
~~& [[http://www.springer.com/east/home?SGWID=5-102-69-173621840-0&changeHeader=true&SHORTCUT=www.springer.com/series/1244 Lecture Notes in Artificial Intelligence]], 4682, 1090-1101, 2007.
Deletions:
~~& Lecture Notes in Artificial Intelligence, 4682, 1090-1101, 2007.

Revision [2881]

Edited on 2007-10-20 15:15:49 by ShihuaZhang
Additions:
~~& [[http://www.inderscience.com/browse/index.php?journalID=189 International Journal of Data Mining and Bioinformatics]], In press.
Deletions:
~~& [[International Journal of Data Mining and Bioinformatics International Journal of Data Mining and Bioinformatics]], In press.

Revision [2880]

Edited on 2007-10-20 15:13:02 by ShihuaZhang
Additions:
~~& [[International Journal of Data Mining and Bioinformatics International Journal of Data Mining and Bioinformatics]], In press.
Deletions:
~~& International Journal of Data Mining and Bioinformatics, In press.

Revision [2879]

Edited on 2007-10-20 15:11:43 by ShihuaZhang
Additions:
~~& International Journal of Data Mining and Bioinformatics, In press.
Deletions:
~~&[[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006. (Acceptance Ratio: 28.0%)

Revision [2878]

Edited on 2007-10-19 17:45:47 by ShihuaZhang
Additions:
~~&[[http://pre.aps.org/ Physical Review E]], 76, 046103, 2007
Deletions:
~~&Physical Review E, 76, 046103, 2007

Revision [2877]

Edited on 2007-10-19 17:31:59 by ShihuaZhang

No Differences

Revision [2876]

Edited on 2007-10-19 17:31:44 by ShihuaZhang

No Differences

Revision [2875]

Edited on 2007-10-19 17:31:07 by ShihuaZhang

No Differences

Revision [2874]

Edited on 2007-10-19 14:17:27 by ShihuaZhang
Additions:
~~&__Shihua Zhang__, Rui-Sheng Wang, Xiang-Sun Zhang
~~&Rui-Sheng Wang, __Shihua Zhang__, Yong Wang, Xiang-Sun Zhang, Luonan Chen
~~& __Shihua Zhang__, Rui-Sheng Wang, and Xiang-Sun Zhang
~~& Rui-Sheng Wang, __Shihua Zhang__, Xiang-Sun Zhang, Luonan Chen
Deletions:
~~&Shihua Zhang, Rui-Sheng Wang, Xiang-Sun Zhang
~~&Rui-Sheng Wang, Shihua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
~~& Shihua Zhang, Rui-Sheng Wang, and Xiang-Sun Zhang
~~& Rui-Sheng Wang, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen

Revision [2873]

Edited on 2007-10-19 14:15:42 by ShihuaZhang
Additions:
~~& Lecture Notes in Artificial Intelligence, 4682, 1090-1101, 2007.
Deletions:
~~& ICIC2007, Lecture Notes in Artificial Intelligence, 4682, 1090-1101, 2007.

Revision [2872]

Edited on 2007-10-19 14:14:19 by ShihuaZhang

No Differences

Revision [2871]

Edited on 2007-10-19 14:14:06 by ShihuaZhang
Additions:
==={{color fg="white" bg="gray" text="Aphorism"}}===
~-"The whole of science is nothing more than a refinement of everyday thinking." ——Einstein
~-"In science, the important thing is to modify and change one’s ideas as science advances."——Herbert Spencer (1820–1903)
~-"The good life is one inspired by love and guided by knowledge." ——Betrand Russell
~-"The difficulty lies, not in the new ideas, but in escaping the old ones, which ramify, for those brought up as most of us have been, into every corner of our minds.." ——John Maynard Keynes (1883 - 1946)
Deletions:
==== #%How to#% ====
<<"The whole of science is nothing more than a refinement of everyday thinking." ——Einstein
"In science, the important thing is to modify and change one’s ideas as science advances."——Herbert Spencer (1820–1903)
"The good life is one inspired by love and guided by knowledge." ——Betrand Russell
"The difficulty lies, not in the new ideas, but in escaping the old ones, which ramify, for those brought up as most of us have been, into every corner of our minds.." ——John Maynard Keynes (1883 - 1946)<<

Revision [2870]

Edited on 2007-10-19 14:10:21 by ShihuaZhang

No Differences

Revision [2869]

Edited on 2007-10-19 14:09:27 by ShihuaZhang

No Differences

Revision [2868]

Edited on 2007-10-19 14:08:45 by ShihuaZhang
Additions:
~~&Neurocomputing, in press
Deletions:
~~&Neurocomputing, in review

Revision [2867]

Edited on 2007-10-19 14:07:21 by ShihuaZhang
Additions:
~~&__Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang.
~~&[[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006. (Acceptance Ratio: 28.0%)
~~& Luonan Chen, Ling-Yun Wu, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang.
~~&[[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
~~&__Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang.
~~&[[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
Deletions:
~~-__Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang.
~~-[[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006. (Acceptance Ratio: 28.0%)
~- Luonan Chen, Ling-Yun Wu, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang.
~~-[[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
~~-__Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang.
~~-[[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.

Revision [2866]

Edited on 2007-10-19 14:06:33 by ShihuaZhang

No Differences

Revision [2865]

Edited on 2007-10-19 14:06:05 by ShihuaZhang
Additions:
~- Identification of functional modules in a PPI network by clique percolation clustering.
~~& __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang.
~~& [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], 30(6), 445-451, 2006.
~- A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.
~~-__Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang.
~~-[[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006. (Acceptance Ratio: 28.0%)
~- Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison.
~- Luonan Chen, Ling-Yun Wu, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang.
~~-[[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
~- Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.
~~-__Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang.
~~-[[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
~- Alignment of Protein Interaction Networks by Integer Quadratic Programming.
~~& Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen.
~~& [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].
Deletions:

~- __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], 30(6), 445-451, 2006.
~- __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** [[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006. (Acceptance Ratio: 28.0%)
~- Luonan Chen, Ling-Yun Wu, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang. **Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison.** [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
~- __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
~- Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].

Revision [2864]

Edited on 2007-10-19 14:01:57 by ShihuaZhang
Additions:
~- Alignment of molecular networks by integer quadratic programming.
~- Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis.
Deletions:
~-1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. **Uncovering fuzzy community structure in complex networks**. Physical Review E, 76, 046103, 2007.
~- __Shihua Zhang__, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], 374(1), 483-490, 2007.
~- **Alignment of molecular networks by integer quadratic programming.
~- **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**.

Revision [2863]

Edited on 2007-10-19 14:01:01 by ShihuaZhang
Additions:
~1) Discovering functions and revealing mechanisms at molecular level from biological networks.
~~-[[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html Eur. Phys. J. B]], 57, 67-74, 2007.
Deletions:
~1) **Discovering functions and revealing mechanisms at molecular level from biological networks**.
[[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html Eur. Phys. J. B]], 57, 67-74, 2007.

Revision [2862]

Edited on 2007-10-19 14:00:13 by ShihuaZhang
Additions:

~1) **Discovering functions and revealing mechanisms at molecular level from biological networks**.
~~&__Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen.
~~&[[http://www3.interscience.wiley.com/cgi-bin/abstract/115804878/ABSTRACT Proteomics]], 7(16), 2856-69, 2007.
~- **Alignment of molecular networks by integer quadratic programming.
~~& Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen (*Co-first authors).
~~& Bioinformatics, [[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm156v1 doi:10.1093/bioinformatics/btm156]].
~- **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**.
~~& __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang.
[[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html Eur. Phys. J. B]], 57, 67-74, 2007.
~- Clustering complex networks and biological networks by Nonnegative Matrix Factorization with various similarity measures
Deletions:
~- __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. **Discovering functions and revealing mechanisms at molecular level from biological networks**. [[http://www3.interscience.wiley.com/cgi-bin/abstract/115804878/ABSTRACT Proteomics]], 7(16), 2856-69, 2007.
~- Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. **Alignment of molecular networks by integer quadratic programming.** Bioinformatics, [[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm156v1 doi:10.1093/bioinformatics/btm156]]. (*Co-first authors).
~- __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. [[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html Eur. Phys. J. B]], 57, 67-74, 2007.

~1) Clustering complex networks and biological networks by Nonnegative Matrix Factorization with various similarity measures

Revision [2861]

Edited on 2007-10-19 13:54:31 by ShihuaZhang
Additions:
~-1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. **Uncovering fuzzy community structure in complex networks**. Physical Review E, 76, 046103, 2007.
Deletions:
~-Detecting community structure in complex networks by optimal rearrangement clustering
~~&Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
~~&PAKDD 2007 workshop: Data Mining in Biomedical Applications, Lecture Notes in Artificial Intelligence, in press
~-[[http://www.biomedcentral.com/1471-2105/8/391/abstract Analysis on multi-domain cooperation for predicting protein-protein interactions]]
~~&Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
~~&BMC Bioinformatics, 8:391, 2007
~-[[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm465v1 Inferring transcriptional regulatory networks from high-throughput data]]
~~&Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
~~&Bioinformatics, doi:10.1093/bioinformatics/btm465, 2007
~-[[http://www.jsbi.org/modules/journal/index.php/GIW06/GIW06F019.pdf A Markov chain model for haplotype assembly by SNP fragments]]
~~& Rui-Sheng Wang, Ling-Yun Wu, Xiang-Sun Zhang and Luonan Chen
~~& Genome Informatics, 2006, 17(2), 162-171
~-[[http://www.springerlink.com/content/m788747500332828/?p=ee9b67db14ab4845804cf0d2b05b3e59&pi=1 Inferring protein-protein interactions by combinatorial models]]
~~&Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, Shi-Hua Zhang and Luonan Chen.
~~& WC2006, IFMBE Proceedings, Vol. 14, pp. 181-184, Springer, 2006
~-[[http://www.sciencedirect.com/science/journal/14769271 The haplotype assembly model with genotype information and local exhaustive search algorithm]]
~~&Ying Wang, Enmin Feng, Rui-Sheng Wang, Dan Zhang
~~&Computational Biology and Chemistry, 2007, 31(4): 288-293
~-[[http://ieeexplore.ieee.org/search/freesrchabstract.jsp?arnumber=4272552&isnumber=4272485&punumber=4272484&k2dockey=4272552@ieeecnfs&query=%28the+construction+of+minimal+set-covering+model+for+tagsnp+selection+problem+and+heuristic+function+algorithm%29+%3Cin%3E+metadata&pos=0 The construction of minimal set-covering model for TagSNP selection problem and heuristic function algorithm]]
~~&Ying Wang, En-Min Feng and Rui-sheng Wang
~~&International Conference on Bioinformatics and Biomedical Engineering (ICBBE2007), Page(s): 252-255
~-[[http://la-press.com/cr_data/files/f_EBO-2-Wang-et-al-Ruisheng_193.pdf Minimum conflict individual haplotyping from SNP fragments and related genotype]]
~~&Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, and Wei Zhang
~~&Evolutionary Bioinformatics, 2006, 2, 271-280
~-[[http://www.bentham.org/cbio/CurrentIssue.htm Models and algorithms for the haplotyping problem]]
~~&Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, and Luonan Chen
~~&Current Bioinformatics, 2006,1(1), 105-114
~-[[http://bioinformatics.oupjournals.org/cgi/content/abstract/21/10/2456 Haplotype reconstruction from SNP fragments by minimum error correction]]
~~&Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, and Xiang-Sun Zhang
~~&Bioinformatics, 2005, 21(10), pp: 2456-2462
~-[[http://www.aporc.org/LNOR/5/ISORA2005F25.pdf Haplotype inference by pure parsimony via genetic algorithm]]
~~&Rui-Sheng Wang, Xiang-Sun Zhang, and Li Sheng
~~& ISORA2005, Lecture Notes in Operations Research, 5, pp. 308-318, 2005
~-[[http://www.sciencedirect.com/science?_ob=ArticleURL&_aset=V-WA-A-W-A-MsSAYZA-UUA-U-AABEUVAZEY-AABZZWWVEY-CDAVDWYWZ-A-U&_rdoc=1&_fmt=summary&_udi=B73G2-4GR33H1-1&_coverDate=08%2F31%2F2005&_cdi=11514&_orig=search&_st=13&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=7364595e3a9847005b0e69b4c71343bb Haplotype assembly from weighted SNP fragments]]
~~& Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang, and Xiang-Sun Zhang
~~& Computational Biology and Chemistry, 2005, 29(4), 281-287
~- [[http://www.springerlink.com/content/1667052972700117/?p=f0411055175646feab15f7eae5cc65d4&pi=0 Sequences of fuzzy-valued Choquet integrable function]]
~~&Rui-Sheng Wang, and Ming-Hu Ha
~~&Advances in Soft Computing, 40, 149-158, 2007
~- Choquet integrals on L-fuzzy sets
~~& Rui-Sheng Wang, Li-Min Wang, and Ming-Hu Ha
~~&The Journal of Fuzzy Mathematics, 2006, 14(1), 151-164
~- On Choquet integrals of fuzzy-valued functions
~~&Rui-Sheng Wang, and Ming-Hu Ha
~~& The Journal of Fuzzy Mathematics, 2006, 14(1), 89-102
~- Outer measures and inner measures on fuzzy measure space
~~&Ming-Hu Ha, Rui-Sheng Wang, and Cong-Xin Wu
~~&The Journal of Fuzzy Mathematics, 2002(10) 1, 127-132
==== #%Publications#% ====

~1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. **Uncovering fuzzy community structure in complex networks**. Physical Review E, 76, 046103, 2007.
~- Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang. **Comparison of Protein Structures by Multi-Objective Optimization**. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
~- __Shihua Zhang__, De-Gang Liu and Xiang-Sun Zhang. **A framework for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
~- __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics, 4, 153-156, 2006.

Revision [2860]

Edited on 2007-10-19 13:50:14 by ShihuaZhang
Additions:
""<img src="images/users/shzhang.jpg" alt="shihua.jpg" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="images/users/shzhang.jpg" alt="shihua.jpg" style="float: right; margin: 1.0%; padding: 0.5%;">""

Revision [2859]

Edited on 2007-10-19 13:49:32 by ShihuaZhang

No Differences

Revision [2858]

Edited on 2007-10-19 13:49:13 by ShihuaZhang
Additions:
====== Shihua Zhang ======
====== 张世华 ======
Deletions:
====== #%Shihua Zhang#% ======
====== Dr. Rui-Sheng Wang ======
====== 王瑞省 博士======

Revision [2857]

Edited on 2007-10-19 13:48:29 by ShihuaZhang
Additions:
====== Dr. Rui-Sheng Wang ======
====== 王瑞省 博士======
Deletions:
Shihua Zhang is a second year Ph.D. student in Operations Research of the Institute
of Applied Mathematics, [[www.amss.ac.cn AMSS]], at CAS. He also received the B.S. degree in Applied
Mathematics from the University of Yunnan, Kunming, China.
His general areas of research have been Operational research, Machine learning, and
Mathematical Programming with applications in Bioinformatics and Systems Biology,
Complex network. He has published over 15 technical papers in the refereed journals
and conference proceedings, such as Proteomics, Bioinformatics, Computational Biology
and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B,
Physica A as well as ICIC, IEEE_ICDM, IEEE_EMBC, and LSMS.
Institute of Applied Mathematics
[[www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science
[[http://www.gucas.ac.cn/gscascn/index.aspx Graduate University of Chinese Academy of Science]], China
~- ''Name:'' Shihua ZHANG
~- ''Sex:'' Male
~- ''Date of birth:'' May 1980
~- ''Current position:'' Phd Candidate in AMSS, CAS.
~- ''Present address (office):'' No.55, Zhongguancun East Road, Beijing 100080, China
~- ''Phone (office):'' 010-62571860.
~- ''E-mail:'' zsh@amss.ac.cn
~- ''Homepage:'' http://zhangroup.aporc.org/ShihuaZhang

Revision [2856]

Edited on 2007-10-19 13:47:18 by ShihuaZhang
Additions:
Academy of Mathematics and Systems Science, CAS
''Address:'' No.55, Zhongguancun East road, Beijing 100080, China
''Tel:'' 86-10-62571860
''Email:'' zsh@amss.ac.cn

Revision [2855]

Edited on 2007-10-19 13:45:09 by ShihuaZhang

No Differences

Revision [2854]

Edited on 2007-10-19 13:43:54 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is a third year PhD student in Operations Research of the Institute of Applied Mathematics, [[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 15 technical papers in the refereed journals and conference proceedings such in Proteomics, Bioinformatics, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
Deletions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is a third year PhD student in Operations Research of the Institute of Applied Mathematics, [[www.amss.ac.cn AMSS]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 15 technical papers in the refereed journals and conference proceedings such in Proteomics, Bioinformatics, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.

Revision [2853]

Edited on 2007-10-19 13:43:24 by ShihuaZhang
Additions:
Shihua Zhang was born on May, 1980 in Shandong Province, China. Now he is a third year PhD student in Operations Research of the Institute of Applied Mathematics, [[www.amss.ac.cn AMSS]], at CAS. His interests are within Bioinformatics and Systems Biology, particularly in Biological network-related issues. He has published over 15 technical papers in the refereed journals and conference proceedings such in Proteomics, Bioinformatics, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
Deletions:
Shihua Zhang is a third year PhD student in Operations Research of the Institute of Applied Mathematics, [[www.amss.ac.cn AMSS]], at CAS. His general areas of research have been Operational research, Machine learning, and Mathematical Programming with applications in Bioinformatics and Systems Biology, Complex network. He has published over 15 technical papers in the refereed journals and conference proceedings such in Proteomics, Bioinformatics, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.

Revision [2852]

Edited on 2007-10-19 13:40:28 by ShihuaZhang
Additions:
Shihua Zhang is a third year PhD student in Operations Research of the Institute of Applied Mathematics, [[www.amss.ac.cn AMSS]], at CAS. His general areas of research have been Operational research, Machine learning, and Mathematical Programming with applications in Bioinformatics and Systems Biology, Complex network. He has published over 15 technical papers in the refereed journals and conference proceedings such in Proteomics, Bioinformatics, Computational Biology and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B, Physica A.
Deletions:
==== #%Index and Journals#% ====
==== #%Links#% ====
Rui-Sheng Wang was born on 7th, Dec., 1978 in Xingtai, Hebei Province, China. She received her B.S. and M.S. Degrees from College of Mathematics & Computer Sciences, Hebei University, and received her Ph.D Degree from Academy of Mathematics & Systems Science, Chinese Academy of Sciences. Her research interests, previously within the areas of fuzzy information processing and nonadditive measure theory, have extended to Combinatorial Optimization and Bioinformatics.

Revision [2851]

Edited on 2007-10-19 13:36:02 by ShihuaZhang
Additions:
~~& [[http://www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science (Beijing, China)
Deletions:
~~& Academy of Mathematics and Systems Science, Chinese Academy of Science (Beijing, China)
~- 1995.9 - 1999.7, B.S. in Applied Mathematics, Department of Mathematics, [[http://www.hbu.edu.cn Hebei University.]]
~- 1999.9 - 2002.7, M.S. in Applied Mathematics, College of Mathematics & Computer Sciences, Hebei University.
~- 2002.9 - 2005.7, Ph.D. in Operation Research and Control theory, [[http://www.amss.ac.cn Academy of Mathematics & Systems Science, CAS.]]

Revision [2850]

Edited on 2007-10-19 13:35:03 by ShihuaZhang
Additions:
~- 9/1999 - 7/2003, Bachelor of Science in Applied Mathematics,
~- 8/2003 - 5/2008 (expected), PhD candidate in Operational Research and Control (PhD-direct student),
Deletions:
~- 9/1999 -- 7/2003, Bachelor of Science in Applied Mathematics,
~- 8/2003 -- 5/2008 (expected), PhD candidate in Operational Research and Control (PhD-direct student),

Revision [2849]

Edited on 2007-10-19 13:34:29 by ShihuaZhang
Additions:
~- 9/1999 -- 7/2003, Bachelor of Science in Applied Mathematics,
~- 8/2003 -- 5/2008 (expected), PhD candidate in Operational Research and Control (PhD-direct student),
Deletions:
~- 9/1999 --- 7/2003, Bachelor of Science in Applied Mathematics,
~- 8/2003 --- 5/2008 (expected), PhD candidate in Operational Research and Control (PhD-direct student),

Revision [2848]

Edited on 2007-10-19 13:33:49 by ShihuaZhang
Additions:
~- 9/1999 --- 7/2003, Bachelor of Science in Applied Mathematics,
~~& School of Mathematics and Statistics, Yunnan University (Kunming, Yunnan, China)
~- 8/2003 --- 5/2008 (expected), PhD candidate in Operational Research and Control (PhD-direct student),
~~& Academy of Mathematics and Systems Science, Chinese Academy of Science (Beijing, China)
Deletions:
~- 1999.9 - 2002.7, Bachelor of Science in Applied Mathematics,
~~& Yunnan University (Kunming, Yunnan, China)

Revision [2847]

Edited on 2007-10-19 13:29:25 by ShihuaZhang
Additions:
~~& Yunnan University (Kunming, Yunnan, China)
Deletions:
=== #%Educational Background#% ===
~- B.S., 1999.9 ~ 2003.7, Yunnan University.
~- Ph.D., 2003.9 ~ Now, Academy of Mathematics & System Sciences, CAS .
----
Yunnan University (Kunming, Yunnan, China)

Revision [2846]

Edited on 2007-10-19 13:27:20 by ShihuaZhang
Additions:
~-Bioinformatics/Systems Biology
Deletions:
~-Bioinformatics

Revision [2845]

Edited on 2007-10-19 13:26:33 by ShihuaZhang
Additions:
~~&Microarray data analysis
Deletions:
=== #%Research Areas and Interests#% ===
~- Bioinformatics
~-Functional modules in molecular networks
~-Molecular networks alignment and query
~-Structural similarity in proteins
~- Complex networks
~-Community structure in complex networks
~~&Tag SNP / Haplotype inference and reconstruction

Revision [2844]

Edited on 2007-10-19 13:23:41 by ShihuaZhang
Additions:
~~& National Natural Science Foundation of China (NSFC), Grant No. 10701080, Joint Investigator
Deletions:
~~& National Natural Science Foundation of China (NSFC), Grant No. 10701080, Principal Investigator

Revision [2843]

Edited on 2007-10-19 13:23:06 by ShihuaZhang
Additions:
~-Research on Some Important Problems in Bioinformatics (2005-2008)
~~& Important Direction Research Grant, Chinese Academy of Sciences (CAS), Joint Investigator.
==={{color fg="white" bg="gray" text="Index and Journals"}}===
==={{color fg="white" bg="gray" text="Useful links"}}===
Deletions:
~-Research on Several Difficult Bioinformatics Problems by Using OR Methodologies (2005-2007)
~~& National Natural Science Foundation of China (NSFC), Grant No. 10471141, Joint Inverstigator
~-Several Fundamental Problems in Complex Networks (2007)
~~& Research Foundation of Renmin University of China, Grant No. 06XNB054, Principal Investigator
==={{color fg="white" bg="blue" text="Index and Journals"}}===
==={{color fg="white" bg="blue" text="Useful links"}}===

Revision [2842]

Edited on 2007-10-19 13:20:44 by ShihuaZhang
Additions:
==={{color fg="white" bg="blue" text="Index and Journals"}}===
==={{color fg="white" bg="blue" text="Useful links"}}===
Deletions:
==={{color fg="white" bg="blue" text="Useful Links"}}===

Revision [2841]

Edited on 2007-10-19 13:19:37 by ShihuaZhang
Additions:
==={{color fg="white" bg="blue" text="Useful Links"}}===
Deletions:
==={{color fg="white" bg="black" text="Useful Links"}}===

Revision [2840]

Edited on 2007-10-19 13:18:57 by ShihuaZhang
Additions:
==={{color fg="white" bg="black" text="Useful Links"}}===
Deletions:
==={{color fg="white" bg="gray" text="Useful Links"}}===

Revision [2839]

Edited on 2007-10-19 13:18:13 by ShihuaZhang

No Differences

Revision [2838]

Edited on 2007-10-19 13:17:41 by ShihuaZhang
Deletions:
~- [[http://intelligent.eic.osaka-sandai.ac.jp/chenen/resource.htm Related Journals]]

Revision [2837]

Edited on 2007-10-19 13:15:23 by ShihuaZhang
Additions:
~- 1999.9 - 2002.7, Bachelor of Science in Applied Mathematics,
Yunnan University (Kunming, Yunnan, China)

Revision [2836]

Edited on 2007-10-19 13:11:54 by ShihuaZhang
Additions:
::c::----
Rui-Sheng Wang was born on 7th, Dec., 1978 in Xingtai, Hebei Province, China. She received her B.S. and M.S. Degrees from College of Mathematics & Computer Sciences, Hebei University, and received her Ph.D Degree from Academy of Mathematics & Systems Science, Chinese Academy of Sciences. Her research interests, previously within the areas of fuzzy information processing and nonadditive measure theory, have extended to Combinatorial Optimization and Bioinformatics.
==={{color fg="white" bg="gray" text="Educational Background"}}===
~- 1995.9 - 1999.7, B.S. in Applied Mathematics, Department of Mathematics, [[http://www.hbu.edu.cn Hebei University.]]
~- 1999.9 - 2002.7, M.S. in Applied Mathematics, College of Mathematics & Computer Sciences, Hebei University.
~- 2002.9 - 2005.7, Ph.D. in Operation Research and Control theory, [[http://www.amss.ac.cn Academy of Mathematics & Systems Science, CAS.]]
==={{color fg="white" bg="gray" text="Research Interests"}}===
~-Bioinformatics
~~&Functional modules in molecular networks
~~&Gene/transcription regulatory networks
~~&Protein interaction networks, signaling pathways
~~&Tag SNP / Haplotype inference and reconstruction
~-Complex networks
~~&Community structure in complex networks
==={{color fg="white" bg="gray" text="Selected Publications"}}===

~1) Clustering complex networks and biological networks by Nonnegative Matrix Factorization with various similarity measures
~~&Rui-Sheng Wang, Shihua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
~~&Neurocomputing, in review
~-Detecting community structure in complex networks by optimal rearrangement clustering
~~&Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
~~&PAKDD 2007 workshop: Data Mining in Biomedical Applications, Lecture Notes in Artificial Intelligence, in press
~-[[http://www.biomedcentral.com/1471-2105/8/391/abstract Analysis on multi-domain cooperation for predicting protein-protein interactions]]
~~&Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
~~&BMC Bioinformatics, 8:391, 2007
~-[[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm465v1 Inferring transcriptional regulatory networks from high-throughput data]]
~~&Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
~~&Bioinformatics, doi:10.1093/bioinformatics/btm465, 2007
~-[[http://link.aps.org/abstract/PRE/v76/e046103 Uncovering fuzzy community structure in complex networks]]
~~&Shihua Zhang, Rui-Sheng Wang, Xiang-Sun Zhang
~~&Physical Review E, 76, 046103, 2007
~-[[http://www.springerlink.com/content/gp6861366h541474/?p=1bdd55bce8a644eaaccdb7ece73033b4&pi=0 Identifying modules in complex networks by a graph-theoretical method and its application in protein interaction networks]]
~~& Rui-Sheng Wang, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen
~~& ICIC2007, Lecture Notes in Artificial Intelligence, 4682, 1090-1101, 2007.
~-[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TVG-4KKFYKY-3&_user=5361375&_coverDate=01%2F15%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000066948&_version=1&_urlVersion=0&_userid=5361375&md5=d293363358012e4536deb99ca67bbd3a Identification of overlapping community structure in complex networks using fuzzy c-means clustering]]
~~& Shihua Zhang, Rui-Sheng Wang, and Xiang-Sun Zhang
~~& Physica A, 2007, 374, 483–490
~-[[http://www.jsbi.org/modules/journal/index.php/GIW06/GIW06F019.pdf A Markov chain model for haplotype assembly by SNP fragments]]
~~& Rui-Sheng Wang, Ling-Yun Wu, Xiang-Sun Zhang and Luonan Chen
~~& Genome Informatics, 2006, 17(2), 162-171
~-[[http://www.springerlink.com/content/m788747500332828/?p=ee9b67db14ab4845804cf0d2b05b3e59&pi=1 Inferring protein-protein interactions by combinatorial models]]
~~&Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, Shi-Hua Zhang and Luonan Chen.
~~& WC2006, IFMBE Proceedings, Vol. 14, pp. 181-184, Springer, 2006
~-[[http://www.sciencedirect.com/science/journal/14769271 The haplotype assembly model with genotype information and local exhaustive search algorithm]]
~~&Ying Wang, Enmin Feng, Rui-Sheng Wang, Dan Zhang
~~&Computational Biology and Chemistry, 2007, 31(4): 288-293
~-[[http://ieeexplore.ieee.org/search/freesrchabstract.jsp?arnumber=4272552&isnumber=4272485&punumber=4272484&k2dockey=4272552@ieeecnfs&query=%28the+construction+of+minimal+set-covering+model+for+tagsnp+selection+problem+and+heuristic+function+algorithm%29+%3Cin%3E+metadata&pos=0 The construction of minimal set-covering model for TagSNP selection problem and heuristic function algorithm]]
~~&Ying Wang, En-Min Feng and Rui-sheng Wang
~~&International Conference on Bioinformatics and Biomedical Engineering (ICBBE2007), Page(s): 252-255
~-[[http://la-press.com/cr_data/files/f_EBO-2-Wang-et-al-Ruisheng_193.pdf Minimum conflict individual haplotyping from SNP fragments and related genotype]]
~~&Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, and Wei Zhang
~~&Evolutionary Bioinformatics, 2006, 2, 271-280
~-[[http://www.bentham.org/cbio/CurrentIssue.htm Models and algorithms for the haplotyping problem]]
~~&Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, and Luonan Chen
~~&Current Bioinformatics, 2006,1(1), 105-114
~-[[http://bioinformatics.oupjournals.org/cgi/content/abstract/21/10/2456 Haplotype reconstruction from SNP fragments by minimum error correction]]
~~&Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, and Xiang-Sun Zhang
~~&Bioinformatics, 2005, 21(10), pp: 2456-2462
~-[[http://www.aporc.org/LNOR/5/ISORA2005F25.pdf Haplotype inference by pure parsimony via genetic algorithm]]
~~&Rui-Sheng Wang, Xiang-Sun Zhang, and Li Sheng
~~& ISORA2005, Lecture Notes in Operations Research, 5, pp. 308-318, 2005
~-[[http://www.sciencedirect.com/science?_ob=ArticleURL&_aset=V-WA-A-W-A-MsSAYZA-UUA-U-AABEUVAZEY-AABZZWWVEY-CDAVDWYWZ-A-U&_rdoc=1&_fmt=summary&_udi=B73G2-4GR33H1-1&_coverDate=08%2F31%2F2005&_cdi=11514&_orig=search&_st=13&_sort=d&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=7364595e3a9847005b0e69b4c71343bb Haplotype assembly from weighted SNP fragments]]
~~& Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang, and Xiang-Sun Zhang
~~& Computational Biology and Chemistry, 2005, 29(4), 281-287
~- [[http://www.springerlink.com/content/1667052972700117/?p=f0411055175646feab15f7eae5cc65d4&pi=0 Sequences of fuzzy-valued Choquet integrable function]]
~~&Rui-Sheng Wang, and Ming-Hu Ha
~~&Advances in Soft Computing, 40, 149-158, 2007
~- Choquet integrals on L-fuzzy sets
~~& Rui-Sheng Wang, Li-Min Wang, and Ming-Hu Ha
~~&The Journal of Fuzzy Mathematics, 2006, 14(1), 151-164
~- On Choquet integrals of fuzzy-valued functions
~~&Rui-Sheng Wang, and Ming-Hu Ha
~~& The Journal of Fuzzy Mathematics, 2006, 14(1), 89-102
~- Outer measures and inner measures on fuzzy measure space
~~&Ming-Hu Ha, Rui-Sheng Wang, and Cong-Xin Wu
~~&The Journal of Fuzzy Mathematics, 2002(10) 1, 127-132
==={{color fg="white" bg="gray" text="Research Projects"}}===
~-Research on Several Difficult Bioinformatics Problems by Using OR Methodologies (2005-2007)
~~& National Natural Science Foundation of China (NSFC), Grant No. 10471141, Joint Inverstigator
~- Research on Models and Algorithms of Haplotype Inference Problem in Bioinformatics (2006-2008).
~~& National Natural Science Foundation of China (NSFC), Grant No. 60503004, Joint Inverstigator
~-Several Fundamental Problems in Complex Networks (2007)
~~& Research Foundation of Renmin University of China, Grant No. 06XNB054, Principal Investigator
~-Research on theory and algorithms of community detection in complex networks (2008-2010)
~~& National Natural Science Foundation of China (NSFC), Grant No. 10701080, Principal Investigator
==={{color fg="white" bg="gray" text="Useful Links"}}===
~- [[http://intelligent.eic.osaka-sandai.ac.jp/chenen/resource.htm Related Journals]]

Revision [2803]

Edited on 2007-10-07 10:38:45 by ShihuaZhang
Additions:
~1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. **Uncovering fuzzy community structure in complex networks**. Physical Review E, 76, 046103, 2007.
Deletions:
~1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. **Uncovering fuzzy community structure in complex networks**. Physical Review E, In press.

Revision [2722]

Edited on 2007-08-30 11:30:19 by ShihuaZhang
Additions:
~- __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. **Discovering functions and revealing mechanisms at molecular level from biological networks**. [[http://www3.interscience.wiley.com/cgi-bin/abstract/115804878/ABSTRACT Proteomics]], 7(16), 2856-69, 2007.
Deletions:
~- __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. **Discovering functions and revealing mechanisms at molecular level from biological networks**. [[http://www3.interscience.wiley.com/cgi-bin/abstract/115804878/ABSTRACT Proteomics]], 7(16):2856-69, 2007.

Revision [2721]

Edited on 2007-08-30 11:29:55 by ShihuaZhang
Additions:
~- __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. **Discovering functions and revealing mechanisms at molecular level from biological networks**. [[http://www3.interscience.wiley.com/cgi-bin/abstract/115804878/ABSTRACT Proteomics]], 7(16):2856-69, 2007.
Deletions:
~- __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. **Discovering functions and revealing mechanisms at molecular level from biological networks**. Proteomics, In press.

Revision [2601]

Edited on 2007-08-03 16:49:15 by ShihuaZhang
Additions:
~1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. **Uncovering fuzzy community structure in complex networks**. Physical Review E, In press.
Deletions:
~1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. **Uncovering fuzzy community structure in complex networks**. Accepted by Physical Review E.

Revision [2595]

Edited on 2007-07-23 16:39:50 by ShihuaZhang
Additions:
~1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. **Uncovering fuzzy community structure in complex networks**. Accepted by Physical Review E.
Deletions:
~1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. **Uncovering fuzzy community structure in complex networks**. Submitted to Physical Review E.

Revision [2594]

Edited on 2007-07-23 16:38:05 by ShihuaZhang
Additions:
and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B,
Physica A as well as ICIC, IEEE_ICDM, IEEE_EMBC, and LSMS.
Deletions:
and Chemistry, BMC Structural Biology, European Physical Journal B, Physica A. as well
as conference: ICIC, IEEE_ICDM, IEEE_EMBC, and LSMS.

Revision [2573]

Edited on 2007-07-05 18:51:29 by ShihuaZhang
Additions:
and Chemistry, BMC Structural Biology, European Physical Journal B, Physica A. as well
as conference: ICIC, IEEE_ICDM, IEEE_EMBC, and LSMS.
Deletions:
and Chemistry, BMC Structural Biology, Euro. Phys. J. B, Physica A. as well as
ICIC, IEEE ICDM, IEEE EMBC, and LSMS.

Revision [2571]

Edited on 2007-07-03 11:05:20 by ShihuaZhang
Additions:
~- __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. [[http://www.edpsciences.org/articles/epjb/abs/2007/09/b06444/b06444.html Eur. Phys. J. B]], 57, 67-74, 2007.
Deletions:
~- __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Eur. Phys. J. B 2007. In press.

Revision [2570]

Edited on 2007-07-03 11:01:16 by ShihuaZhang
Additions:
~- Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. **Alignment of molecular networks by integer quadratic programming.** Bioinformatics, [[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm156v1 doi:10.1093/bioinformatics/btm156]]. (*Co-first authors).
Deletions:
~- Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. **Alignment of molecular networks by integer quadratic programming.** Bioinformatics, In press. (*Co-first authors).

Revision [2569]

Edited on 2007-07-03 10:16:25 by ShihuaZhang
Additions:
====== #%Shihua Zhang#% ======
Deletions:
====== #%**Shihua Zhang**#% ======

Revision [2568]

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====== #%**Shihua Zhang**#% ======
Deletions:
====== #%Shihua Zhang#% ======

Revision [2567]

Edited on 2007-07-03 10:13:28 by ShihuaZhang
Additions:
~- __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
~- __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics, 4, 153-156, 2006.
Deletions:
~- __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
~- __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics, 4, 153-156, 2006.

Revision [2566]

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=== #%Educational Background#% ===
=== #%Research Areas and Interests#% ===
==== #%Publications#% ====
Deletions:
=== #%{{colour c="red" text=" Educational Background "}}#% ===
=== #%{{colour c="red" text="Research Areas and Interests"}}#% ===
==== #%{{colour c="red" text="Publications"}}#% ====

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=== #%{{colour c="red" text=" Educational Background "}}#% ===
=== #%{{colour c="red" text="Research Areas and Interests"}}#% ===
Deletions:
=== #%{{colour c="green" text=" Educational Background "}}#% ===
=== #%{{colour c="green" text="Research Areas and Interests"}}#% ===

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====== #%Shihua Zhang#% ======
Deletions:
======= #%Shihua Zhang#% =======

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======= #%Shihua Zhang#% =======
Deletions:
======= #%Shihua Zhang#%=======

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======= #%Shihua Zhang#%=======
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====== #%Shihua Zhang#%======

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====== #%Shihua Zhang#%======
Deletions:
====== Shihua Zhang======

Revision [2560]

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=== #%{{colour c="green" text=" Educational Background "}}#% ===
=== #%{{colour c="green" text="Research Areas and Interests"}}#% ===
Deletions:
=== {{colour c="green" text=" Educational Background "}} ===
=== {{colour c="green" text="Research Areas and Interests"}} ===

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==== #%{{colour c="red" text="Publications"}}#% ====
Deletions:
==== #%{{colour c="green" text="Publications"}}#% ====

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==== #%{{colour c="green" text="Publications"}}#% ====
Deletions:
==== {{colour c="green" text="Publications"}} ====

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==== #%Index and Journals#% ====
Deletions:
==== Index and Journals ====

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Edited on 2007-07-03 00:00:40 by ShihuaZhang
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==== #%Links#% ====
Deletions:
==== Links ====

Revision [2555]

Edited on 2007-07-03 00:00:18 by ShihuaZhang
Additions:
Shihua Zhang is a second year Ph.D. student in Operations Research of the Institute
ICIC, IEEE ICDM, IEEE EMBC, and LSMS.
==== #%How to#% ====
Deletions:
''''Shihua Zhang is a second year Ph.D. student in Operations Research of the Institute
ICIC, IEEE ICDM, IEEE EMBC, and LSMS.''''
==== How to ====

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Additions:
''''Shihua Zhang is a second year Ph.D. student in Operations Research of the Institute
ICIC, IEEE ICDM, IEEE EMBC, and LSMS.''''
Deletions:
Shihua Zhang is a second year Ph.D. student in Operations Research of the Institute
ICIC, IEEE ICDM, IEEE EMBC, and LSMS.

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Edited on 2007-07-02 23:56:53 by ShihuaZhang
Additions:
==== Index and Journals ====
==== Links ====
==== How to ====
Deletions:
=== Index and Journals ===
=== Links ===
=== How to ===

Revision [2552]

Edited on 2007-07-02 23:55:41 by ShihuaZhang
Additions:
==== {{colour c="green" text="Publications"}} ====
Deletions:
==== {{colour c="green" text="Publication"}} ====
-Papers in Refereed International Journals and Conference Proceedings
- Papers in Refereed Chinese Journals and Conference Proceedings

Revision [2551]

Edited on 2007-07-02 23:55:04 by ShihuaZhang
Additions:
~- __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics, 4, 153-156, 2006.
Deletions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics, 4, 153-156, 2006.

Revision [2549]

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""<img src="images/users/shzhang.jpg" alt="shihua.jpg" style="float: right; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="images/users/shzhan.jpg" alt="shihua.jpg" style="float: right; margin: 1.0%; padding: 0.5%;">""

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<<"The whole of science is nothing more than a refinement of everyday thinking." ——Einstein
"In science, the important thing is to modify and change one’s ideas as science advances."——Herbert Spencer (1820–1903)
"The good life is one inspired by love and guided by knowledge." ——Betrand Russell
"The difficulty lies, not in the new ideas, but in escaping the old ones, which ramify, for those brought up as most of us have been, into every corner of our minds.." ——John Maynard Keynes (1883 - 1946)<<

Revision [2546]

Edited on 2007-07-02 11:29:47 by ShihuaZhang
Deletions:
<<"The whole of science is nothing more than a refinement of everyday thinking." ——Einstein
"In science, the important thing is to modify and change one’s ideas as science advances."——Herbert Spencer (1820–1903)
"The good life is one inspired by love and guided by knowledge." ——Betrand Russell
"The difficulty lies, not in the new ideas, but in escaping the old ones, which ramify, for those brought up as most of us have been, into every corner of our minds.." ——John Maynard Keynes (1883 - 1946)<<

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Edited on 2007-07-02 10:58:57 by ShihuaZhang
Additions:
~-Community structure in complex networks
Deletions:
~-Community structure in complex networks

Revision [2532]

Edited on 2007-07-02 10:58:03 by ShihuaZhang
Additions:
~-Functional modules in molecular networks
~-Molecular networks alignment and query
~-Community structure in complex networks
Deletions:
~-Protein-protein interaction(PPI) network

Revision [2531]

Edited on 2007-07-02 10:42:21 by ShihuaZhang
Additions:
Institute of Applied Mathematics
[[www.amss.ac.cn Academy of Mathematics and Systems Science]], Chinese Academy of Science
Deletions:
[[www.amss.ac.cn Academy of Mathematics and Systems Science]]
Institute of Applied Mathematics
Academy of Mathematics and Systems Science
Chinese Academy of Science

Revision [2530]

Edited on 2007-07-02 10:39:48 by ShihuaZhang
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=== Misc ===

Revision [2519]

Edited on 2007-06-06 18:29:31 by ShihuaZhang
Additions:
and Chemistry, BMC Structural Biology, Euro. Phys. J. B, Physica A. as well as
Deletions:
and Chemistry, BMC Structural Biology, Euro. Phys. J. B, and Physica A. as well as

Revision [2516]

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Revision [2515]

Edited on 2007-06-05 11:01:14 by ShihuaZhang
Additions:
of Applied Mathematics, [[www.amss.ac.cn AMSS]], at CAS. He also received the B.S. degree in Applied
Mathematics from the University of Yunnan, Kunming, China.
Deletions:
of Applied Mathematics, [[www.amss.ac.cn AMSS]], at CAS. He also received the B.E.
degree in Applied Mathematics from the University of Yunnan, Kunming, China.

Revision [2514]

Edited on 2007-06-05 11:00:33 by ShihuaZhang
Additions:
Shihua Zhang is a second year Ph.D. student in Operations Research of the Institute
of Applied Mathematics, [[www.amss.ac.cn AMSS]], at CAS. He also received the B.E.
degree in Applied Mathematics from the University of Yunnan, Kunming, China.
Deletions:
Shihua Zhang a second year Ph.D. student in Operations Research the Institute of Applied
Mathematics, [[www.amss.ac.cn AMSS]], at CAS. He also received the B.E. degree in
Applied Mathematics from the University of Yunnan, Kunming, China.

Revision [2513]

Edited on 2007-06-05 10:59:25 by ShihuaZhang
Additions:
Shihua Zhang a second year Ph.D. student in Operations Research the Institute of Applied
Mathematics, [[www.amss.ac.cn AMSS]], at CAS. He also received the B.E. degree in
Applied Mathematics from the University of Yunnan, Kunming, China.
His general areas of research have been Operational research, Machine learning, and
Mathematical Programming with applications in Bioinformatics and Systems Biology,
Complex network. He has published over 15 technical papers in the refereed journals
and conference proceedings, such as Proteomics, Bioinformatics, Computational Biology
and Chemistry, BMC Structural Biology, Euro. Phys. J. B, and Physica A. as well as
ICIC, IEEE ICDM, IEEE EMBC, and LSMS.
Deletions:
I am a second year Ph.D. student with the Institute of Applied
Mathematics, [[www.amss.ac.cn AMSS]], at CAS. I am interested in modeling for
Bioinformatics and theory for complex networks.

Revision [2510]

Edited on 2007-05-30 18:41:48 by ShihuaZhang
Additions:
~1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. **Uncovering fuzzy community structure in complex networks**. Submitted to Physical Review E.
Deletions:
~1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. Uncovering fuzzy community structure in complex networks. Submitted to Physical Review E.

Revision [2509]

Edited on 2007-05-30 18:40:50 by ShihuaZhang
Additions:
~1) __Shihua Zhang__, Rui-Sheng Wang and Xiang-Sun Zhang. Uncovering fuzzy community structure in complex networks. Submitted to Physical Review E.
~- __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. **Discovering functions and revealing mechanisms at molecular level from biological networks**. Proteomics, In press.
Deletions:
~1) __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. **Discovering functions and revealing mechanisms at molecular level from biological networks**. Proteomics, In press.

Revision [2508]

Edited on 2007-05-30 18:36:57 by ShihuaZhang
Additions:
~- __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
~- Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].
Deletions:
~- __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
~- Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].

Revision [2507]

Edited on 2007-05-30 18:36:31 by ShihuaZhang

No Differences

Revision [2506]

Edited on 2007-05-30 18:36:01 by ShihuaZhang
Additions:
~- Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].
Deletions:

~- Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].

Revision [2505]

Edited on 2007-05-30 18:35:19 by ShihuaZhang
Additions:
~- __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Eur. Phys. J. B 2007. In press.
~- __Shihua Zhang__, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], 374(1), 483-490, 2007.
~- __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], 30(6), 445-451, 2006.
~- __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** [[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006. (Acceptance Ratio: 28.0%)
~- Luonan Chen, Ling-Yun Wu, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang. **Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison.** [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
~- __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
~- Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].
~- Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang. **Comparison of Protein Structures by Multi-Objective Optimization**. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
~- __Shihua Zhang__, De-Gang Liu and Xiang-Sun Zhang. **A framework for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
Deletions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Eur. Phys. J. B 2007. In press.
1) __Shihua Zhang__, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], 374(1), 483-490, 2007.
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], 30(6), 445-451, 2006.
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** [[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006. (Acceptance Ratio: 28.0%)
1) Luonan Chen, Ling-Yun Wu, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang. **Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison.** [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
1) __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
3) Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].
4) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang. **Comparison of Protein Structures by Multi-Objective Optimization**. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
5) __Shihua Zhang__, De-Gang Liu and Xiang-Sun Zhang. **A framework for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.

Revision [2504]

Edited on 2007-05-30 18:34:37 by ShihuaZhang
Additions:
~1) __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. **Discovering functions and revealing mechanisms at molecular level from biological networks**. Proteomics, In press.
~- Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. **Alignment of molecular networks by integer quadratic programming.** Bioinformatics, In press. (*Co-first authors).
Deletions:
1) __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. **Discovering functions and revealing mechanisms at molecular level from biological networks**. Proteomics, In press.
1) Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. **Alignment of molecular networks by integer quadratic programming.** Bioinformatics, In press. (*Co-first authors).

Revision [2503]

Edited on 2007-05-30 18:31:17 by ShihuaZhang

No Differences

Revision [2502]

Edited on 2007-05-30 18:30:12 by ShihuaZhang
Additions:
1) Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. **Alignment of molecular networks by integer quadratic programming.** Bioinformatics, In press. (*Co-first authors).
Deletions:
1) Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. **Alignment of molecular networks by integer quadratic programming.** Bioinformatics, In press. (*Co-first authors).

Revision [2501]

Edited on 2007-05-30 18:29:36 by ShihuaZhang
Additions:
1) Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. **Alignment of molecular networks by integer quadratic programming.** Bioinformatics, In press. (*Co-first authors).
Deletions:
1) Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. **Alignment of molecular networks by integer quadratic programming.** Bioinformatics, In press. (*Co-first authors).

Revision [2500]

Edited on 2007-05-30 18:29:09 by ShihuaZhang

No Differences

Revision [2499]

Edited on 2007-05-30 18:27:48 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], 30(6), 445-451, 2006.
1) __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
Deletions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], 30(6), 445-451, 2006.
2) __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.

Revision [2498]

Edited on 2007-05-30 18:26:15 by ShihuaZhang
Additions:
2) __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
3) Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].
4) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang. **Comparison of Protein Structures by Multi-Objective Optimization**. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
5) __Shihua Zhang__, De-Gang Liu and Xiang-Sun Zhang. **A framework for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
Deletions:
1) __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
2) Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].
3) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang. **Comparison of Protein Structures by Multi-Objective Optimization**. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
4) __Shihua Zhang__, De-Gang Liu and Xiang-Sun Zhang. **A framework for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.

Revision [2497]

Edited on 2007-05-30 18:25:49 by ShihuaZhang

No Differences

Revision [2496]

Edited on 2007-05-30 18:24:47 by ShihuaZhang
Deletions:

Revision [2495]

Edited on 2007-05-30 18:24:11 by ShihuaZhang

No Differences

Revision [2494]

Edited on 2007-05-30 18:23:16 by ShihuaZhang
Additions:

1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], 30(6), 445-451, 2006.
Deletions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], 30(6), 445-451, 2006.

Revision [2493]

Edited on 2007-05-30 18:22:35 by ShihuaZhang

No Differences

Revision [2492]

Edited on 2007-05-30 18:21:44 by ShihuaZhang
Additions:
1) Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. **Alignment of molecular networks by integer quadratic programming.** Bioinformatics, In press. (*Co-first authors).
1) __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. **Discovering functions and revealing mechanisms at molecular level from biological networks**. Proteomics, In press.
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Eur. Phys. J. B 2007. In press.
Deletions:
1) Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. Alignment of molecular networks by integer
quadratic programming. Bioinformatics, In press. (*Co-first authors).
1) __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. Discovering functions and revealing mechanisms at molecular level from biological networks.Proteomics, In press.
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Eur. Phys. J. B 2007. In press.

Revision [2491]

Edited on 2007-05-30 18:20:39 by ShihuaZhang
Additions:
1) Zhenping Li*, __Shihua Zhang__*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. Alignment of molecular networks by integer
1) __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. Discovering functions and revealing mechanisms at molecular level from biological networks.Proteomics, In press.
Deletions:
1) Zhenping Li*, __Shihua Zhang*__, Yong Wang, Xiang-Sun Zhang and Luonan Chen. Alignment of molecular networks by integer
2) __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. Discovering functions and revealing mechanisms at molecular level from biological networks.Proteomics, In press.

Revision [2490]

Edited on 2007-05-30 18:19:47 by ShihuaZhang
Additions:
1) Zhenping Li*, __Shihua Zhang*__, Yong Wang, Xiang-Sun Zhang and Luonan Chen. Alignment of molecular networks by integer
quadratic programming. Bioinformatics, In press. (*Co-first authors).
2) __Shihua Zhang__, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. Discovering functions and revealing mechanisms at molecular level from biological networks.Proteomics, In press.
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Eur. Phys. J. B 2007. In press.
Deletions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Eur. Phys. J. B 2007. In press.

Revision [2489]

Edited on 2007-05-30 18:14:58 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Eur. Phys. J. B 2007. In press.
Deletions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Submitted to EJPB.

Revision [2471]

Edited on 2007-05-10 20:39:43 by ShihuaZhang
Additions:
4) __Shihua Zhang__, De-Gang Liu and Xiang-Sun Zhang. **A framework for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
Deletions:
4) __Shihua Zhang__, De-Gang Liu and Xiang-Sun Zhang. **A framwork for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.

Revision [2470]

Edited on 2007-04-29 14:12:56 by ShihuaZhang
Additions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics, 4, 153-156, 2006.
Deletions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** , Chinese journal of Bioinformatics, 4, 153-156, 2006.

Revision [2417]

Edited on 2007-03-04 14:13:57 by ShihuaZhang

No Differences

Revision [2416]

Edited on 2007-03-04 14:13:45 by ShihuaZhang
Additions:
"The difficulty lies, not in the new ideas, but in escaping the old ones, which ramify, for those brought up as most of us have been, into every corner of our minds.." ——John Maynard Keynes (1883 - 1946)<<
Deletions:
""The difficulty lies, not in the new ideas, but in escaping the old ones, which ramify, for those brought up as most of us have been, into every corner of our minds.." ——John Maynard Keynes (1883 - 1946)<<

Revision [2415]

Edited on 2007-03-04 14:13:32 by ShihuaZhang

No Differences

Revision [2414]

Edited on 2007-03-04 14:13:20 by ShihuaZhang
Additions:
"The good life is one inspired by love and guided by knowledge." ——Betrand Russell
""The difficulty lies, not in the new ideas, but in escaping the old ones, which ramify, for those brought up as most of us have been, into every corner of our minds.." ——John Maynard Keynes (1883 - 1946)<<
Deletions:
"The good life is one inspired by love and guided by knowledge." ——Betrand Russell<<

Revision [2395]

Edited on 2007-01-20 20:10:21 by ShihuaZhang
Additions:
~- B.S., 1999.9 ~ 2003.7, Yunnan University.
Deletions:
~- B.S., 1999.9 ~ 2003.7, YunNan University.

Revision [2392]

Edited on 2007-01-09 22:39:13 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** [[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006. (Acceptance Ratio: 28.0%)
Deletions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** [[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006.

Revision [2391]

Edited on 2007-01-09 22:34:38 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** [[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006.
Deletions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.**[[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006.

Revision [2390]

Edited on 2007-01-09 22:34:13 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.**[[http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/icdmw/&toc=comp/proceedings/icdmw/2006/2702/00/2702toc.xml ICDMW]], 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006.
Deletions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** ICDMW, 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006.

Revision [2389]

Edited on 2007-01-09 22:33:00 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** ICDMW, 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006.
Deletions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** ICDMW, 130-135, Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06), 2006.

Revision [2388]

Edited on 2007-01-09 22:32:01 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** ICDMW, 130-135, Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06), 2006.
Deletions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** Accepted by IEEE ICDM DMB 2006.

Revision [2386]

Edited on 2007-01-05 20:22:39 by ShihuaZhang
Deletions:
If you understand a theorem and you can prove it publish it in a mathematical journal
if you understand it but can't prove it submit it to a physics journal
if you can neither understand it nor prove it send it to a journal of engineering
A professor to his student

Revision [2384]

Edited on 2007-01-04 23:19:52 by ShihuaZhang
Additions:
If you understand a theorem and you can prove it publish it in a mathematical journal
A professor to his student
Deletions:
<<If you understand a theorem and you can prove it publish it in a mathematical journal
A professor to his student <<

Revision [2383]

Edited on 2007-01-04 23:19:27 by ShihuaZhang
Additions:
<<If you understand a theorem and you can prove it publish it in a mathematical journal
if you understand it but can't prove it submit it to a physics journal
if you can neither understand it nor prove it send it to a journal of engineering
A professor to his student <<
Deletions:
>>if you understand a theorem and you can prove it
publish it in a mathematical journal
if you understand it but can't prove it
submit it to a physics journal
if you can neither understand it nor prove it
send it to a journal of engineering
A professor to his student >>

Revision [2382]

Edited on 2007-01-04 23:18:28 by ShihuaZhang

No Differences

Revision [2381]

Edited on 2007-01-04 23:17:52 by ShihuaZhang
Additions:
A professor to his student >>
Deletions:
A professor to his student
>>

Revision [2380]

Edited on 2007-01-04 23:17:26 by ShihuaZhang
Additions:
A professor to his student
>>
Deletions:
A professor to his student >>

Revision [2379]

Edited on 2007-01-04 23:17:02 by ShihuaZhang

No Differences

Revision [2378]

Edited on 2007-01-04 23:16:46 by ShihuaZhang
Additions:
A professor to his student >>
Deletions:
A professor to his student

Revision [2377]

Edited on 2007-01-04 23:16:29 by ShihuaZhang
Additions:
A professor to his student
Deletions:
----A professor to his student

Revision [2376]

Edited on 2007-01-04 23:16:12 by ShihuaZhang

No Differences

Revision [2375]

Edited on 2007-01-04 23:15:51 by ShihuaZhang
Additions:
>>if you understand a theorem and you can prove it
publish it in a mathematical journal
if you understand it but can't prove it
submit it to a physics journal
if you can neither understand it nor prove it
send it to a journal of engineering
----A professor to his student

Revision [2373]

Edited on 2006-12-30 10:41:01 by ShihuaZhang
Additions:
2) Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC06, SaD03.4, 5527-5530, 2006]].
Deletions:
2) Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006, SaD03.4, 5527-5530, 2006]].

Revision [2372]

Edited on 2006-12-30 10:39:44 by ShihuaZhang
Additions:
2) Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006, SaD03.4, 5527-5530, 2006]].
Deletions:
2) Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]].

Revision [2371]

Edited on 2006-12-30 10:32:39 by ShihuaZhang
Additions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** , Chinese journal of Bioinformatics, 4, 153-156, 2006.
Deletions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** , 4, 153-156, Chinese journal of Bioinformatics.

Revision [2370]

Edited on 2006-12-30 10:32:05 by ShihuaZhang
Additions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** , 4, 153-156, Chinese journal of Bioinformatics.
Deletions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics, 4, 153-156.

Revision [2369]

Edited on 2006-12-30 10:31:12 by ShihuaZhang
Additions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics, 4, 153-156.
Deletions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.

Revision [2355]

Edited on 2006-12-23 23:37:41 by ShihuaZhang
Additions:
~-[[http://www.ieee.org/portal/pages/about/whatis/code.html;jsessionid=FN2W3vGDLyFn02PN3GTWfKph2vtlMG3LqlhDnB2GdHvLDlVYJXXr!931003289 IEEE Code of Ethics]]

Revision [2339]

Edited on 2006-12-22 18:12:55 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], 30(6), 445-451, 2006.
Deletions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.

Revision [2338]

Edited on 2006-12-22 18:11:15 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], 374(1), 483-490, 2007.
Deletions:
1) __Shihua Zhang__, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], In press.

Revision [2297]

Edited on 2006-11-22 22:02:37 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Submitted to EJPB.
Deletions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Submitted to EJPB.

Revision [2296]

Edited on 2006-11-22 22:01:50 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Submitted to EJPB.
Deletions:
1)__Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Submitted to EJPB.

Revision [2295]

Edited on 2006-11-22 22:01:19 by ShihuaZhang
Additions:
1)__Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis**. Submitted to EJPB.

Revision [2293]

Edited on 2006-11-19 19:08:22 by ShihuaZhang
Additions:
2) Zhenping Li, Yong Wang, __Shihua Zhang__, Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]].
Deletions:
2) Zhenping Li, Yong Wang, __Shihua Zhang__ and Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]].

Revision [2292]

Edited on 2006-11-19 11:18:20 by ShihuaZhang
Additions:
-Papers in Refereed International Journals and Conference Proceedings
Deletions:
--Papers in Refereed International Journals and Conference Proceedings

Revision [2291]

Edited on 2006-11-19 11:18:00 by ShihuaZhang
Additions:
--Papers in Refereed International Journals and Conference Proceedings
Deletions:
----Papers in Refereed International Journals and Conference Proceedings

Revision [2290]

Edited on 2006-11-19 11:17:42 by ShihuaZhang
Additions:
----Papers in Refereed International Journals and Conference Proceedings
Deletions:
----Papers in Refereed International Journals and Conference Proceedings----

Revision [2289]

Edited on 2006-11-19 11:17:04 by ShihuaZhang
Additions:
----Papers in Refereed International Journals and Conference Proceedings----
Deletions:
__Papers in Refereed International Journals and Conference Proceedings__

Revision [2288]

Edited on 2006-11-19 11:16:05 by ShihuaZhang
Additions:
__Papers in Refereed International Journals and Conference Proceedings__
Deletions:
= Papers in Refereed International Journals and Conference Proceedings =

Revision [2287]

Edited on 2006-11-19 11:15:38 by ShihuaZhang
Additions:
= Papers in Refereed International Journals and Conference Proceedings =
Deletions:
== Papers in Refereed International Journals and Conference Proceedings ==

Revision [2286]

Edited on 2006-11-19 11:15:14 by ShihuaZhang
Additions:
== Papers in Refereed International Journals and Conference Proceedings ==
Deletions:
- Papers in Refereed International Journals and Conference Proceedings

Revision [2285]

Edited on 2006-11-19 11:13:49 by ShihuaZhang
Additions:
==== {{colour c="green" text="Publication"}} ====
Deletions:
=== {{colour c="green" text="Publication"}} ===

Revision [2284]

Edited on 2006-11-19 11:13:01 by ShihuaZhang
Additions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.
Deletions:
~1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.

Revision [2283]

Edited on 2006-11-19 11:12:33 by ShihuaZhang
Additions:
~1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.
Deletions:
~1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.

Revision [2282]

Edited on 2006-11-19 11:12:03 by ShihuaZhang
Additions:
~1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.
Deletions:
~1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.

Revision [2281]

Edited on 2006-11-19 11:11:43 by ShihuaZhang
Additions:
~1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.
Deletions:
~1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.

Revision [2280]

Edited on 2006-11-19 11:11:23 by ShihuaZhang
Additions:
~1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.
Deletions:
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.

Revision [2279]

Edited on 2006-11-19 11:09:12 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** Accepted by IEEE ICDM DMB 2006.
1) Luonan Chen, Ling-Yun Wu, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang. **Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison.** [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
1) __Shihua Zhang__, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], In press.
1) __Shihua Zhang__, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
2) Zhenping Li, Yong Wang, __Shihua Zhang__ and Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]].
3) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, __Shihua Zhang__ and Xiang-Sun Zhang. **Comparison of Protein Structures by Multi-Objective Optimization**. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
4) __Shihua Zhang__, De-Gang Liu and Xiang-Sun Zhang. **A framwork for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
1) __Shihua Zhang__ and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.
Deletions:
1) **{{colour c="green" text="Shihua Zhang"}}**, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** Accepted by IEEE ICDM DMB 2006.
1) Luonan Chen, Ling-Yun Wu, Yong Wang, **{{colour c="green" text="Shihua Zhang"}}** and Xiang-Sun Zhang. **Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison.** [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
1) **{{colour c="green" text="Shihua Zhang"}}**, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], In press.
1) **{{colour c="green" text="Shihua Zhang"}}**, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
2) Zhenping Li, Yong Wang, **{{colour c="green" text="Shihua Zhang"}}** and Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]].
3) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, **{{colour c="green" text="Shihua Zhang"}}** and Xiang-Sun Zhang. **Comparison of Protein Structures by Multi-Objective Optimization**. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
4) **{{colour c="green" text="Shihua Zhang"}}**, De-Gang Liu and Xiang-Sun Zhang. **A framwork for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
1) **{{colour c="green" text="Shihua Zhang"}}** and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.

Revision [2278]

Edited on 2006-11-19 11:07:23 by ShihuaZhang
Additions:
1) __Shihua Zhang__, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.
Deletions:
1) _Shihua Zhang_, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.

Revision [2277]

Edited on 2006-11-19 11:06:44 by ShihuaZhang
Additions:
1) _Shihua Zhang_, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.
Deletions:
1) _{{colour c="green" text="Shihua Zhang"}}_, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.

Revision [2276]

Edited on 2006-11-19 11:06:17 by ShihuaZhang
Additions:
1) _{{colour c="green" text="Shihua Zhang"}}_, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.
Deletions:
1) **{{colour c="green" text="Shihua Zhang"}}**, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.

Revision [2275]

Edited on 2006-11-19 11:03:35 by ShihuaZhang
Additions:
=== Misc ===

Revision [2274]

Edited on 2006-11-17 00:00:24 by ShihuaZhang

No Differences

Revision [2273]

Edited on 2006-11-16 23:59:57 by ShihuaZhang
Additions:
1) **{{colour c="green" text="Shihua Zhang"}}**, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** Accepted by IEEE ICDM DMB 2006.
1) Luonan Chen, Ling-Yun Wu, Yong Wang, **{{colour c="green" text="Shihua Zhang"}}** and Xiang-Sun Zhang. **Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison.** [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
1) **{{colour c="green" text="Shihua Zhang"}}**, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], In press.
1) **{{colour c="green" text="Shihua Zhang"}}**, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
2) Zhenping Li, Yong Wang, **{{colour c="green" text="Shihua Zhang"}}** and Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]].
3) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, **{{colour c="green" text="Shihua Zhang"}}** and Xiang-Sun Zhang. **Comparison of Protein Structures by Multi-Objective Optimization**. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
4) **{{colour c="green" text="Shihua Zhang"}}**, De-Gang Liu and Xiang-Sun Zhang. **A framwork for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
1) **{{colour c="green" text="Shihua Zhang"}}** and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.
Deletions:
1) Shihua Zhang, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** Accepted by IEEE ICDM DMB 2006.
1) Luonan Chen, Ling-Yun Wu, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. **Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison.** [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
1) Shihua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], In press.
1) Shihua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]].
3) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. **Comparison of Protein Structures by Multi-Objective Optimization**. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
4) Shihua Zhang, De-Gang Liu and Xiang-Sun Zhang. **A framwork for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
1) 1. Shihua Zhang and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.

Revision [2272]

Edited on 2006-11-16 23:58:30 by ShihuaZhang
Additions:
1) **{{colour c="green" text="Shihua Zhang"}}**, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.
Deletions:
1) {{colour c="green" text="Shihua Zhang"}}, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.

Revision [2271]

Edited on 2006-11-16 23:58:05 by ShihuaZhang
Additions:
1) {{colour c="green" text="Shihua Zhang"}}, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.
Deletions:
1) {{colour c="green" text=" Educational Background "}} Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.

Revision [2270]

Edited on 2006-11-16 23:57:34 by ShihuaZhang
Additions:
1) {{colour c="green" text=" Educational Background "}} Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.
Deletions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.

Revision [2269]

Edited on 2006-11-16 23:56:58 by ShihuaZhang
Additions:
1) Shihua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], In press.
1) Shihua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
4) Shihua Zhang, De-Gang Liu and Xiang-Sun Zhang. **A framwork for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
Deletions:
1) Shi-Hua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], In press.
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
4) 1. Shihua Zhang, De-Gang Liu and Xiang-Sun Zhang. **A framwork for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.

Revision [2268]

Edited on 2006-11-16 23:56:26 by ShihuaZhang
Additions:
4) 1. Shihua Zhang, De-Gang Liu and Xiang-Sun Zhang. **A framwork for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
Deletions:
4) Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. **A framwork for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.

Revision [2267]

Edited on 2006-11-16 23:55:51 by ShihuaZhang
Additions:
1) 1. Shihua Zhang and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.
Deletions:
1) 1. Shi-Hua Zhang and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.

Revision [2266]

Edited on 2006-11-16 23:55:07 by ShihuaZhang
Additions:
1) 1. Shi-Hua Zhang and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.
Deletions:
1) Shi-Hua Zhang and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.

Revision [2265]

Edited on 2006-11-16 23:54:29 by ShihuaZhang
Additions:
3) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. **Comparison of Protein Structures by Multi-Objective Optimization**. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
4) Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. **A framwork for structural similarity search in proteins.** [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame ISORA05]], Lecture Notes in Operations Research, 5, 285-295, 2005.
Deletions:
3) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html **Comparison of Protein Structures by Multi-Objective Optimization**]]. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
4) Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame **A framwork for structural similarity search in proteins**]] . ISORA05, Lecture Notes in Operations Research, 5, 285-295, 2005.

Revision [2264]

Edited on 2006-11-16 23:52:54 by ShihuaZhang
Additions:
1) Shihua Zhang, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. **A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.** Accepted by IEEE ICDM DMB 2006.
1) Luonan Chen, Ling-Yun Wu, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. **Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison.** [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
1) Shi-Hua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. **Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], In press.
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. **Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods.** [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. **Alignment of Protein Interaction Networks by Integer Quadratic Programming.** [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]].
3) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html **Comparison of Protein Structures by Multi-Objective Optimization**]]. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
4) Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame **A framwork for structural similarity search in proteins**]] . ISORA05, Lecture Notes in Operations Research, 5, 285-295, 2005.
1) Shi-Hua Zhang and Xiang-Sun Zhang. **Visualization of conformational space based on CA-CA distance.** Chinese journal of Bioinformatics. In press.
Deletions:
1) Shihua Zhang, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks. Accepted by IEEE ICDM DMB 2006.
1) Luonan Chen, Ling-Yun Wu, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison. [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
1) Shi-Hua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering. [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], In press.
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]].
3) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
4) Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, 285-295, 2005.
1) Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.

Revision [2263]

Edited on 2006-11-16 23:51:07 by ShihuaZhang
Additions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. **Identification of functional modules in a PPI network by clique percolation clustering.** [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.
Deletions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.

Revision [2262]

Edited on 2006-11-16 23:47:30 by ShihuaZhang
Deletions:
>> I am shihua >>

Revision [2261]

Edited on 2006-11-16 00:06:21 by ShihuaZhang
Additions:
""<img src="images/users/zsh0.jpg" alt="zsh" style="float: right; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="images/users/zsh.jpg" alt="zsh" style="float: right; margin: 1.0%; padding: 0.5%;">""

Revision [2260]

Edited on 2006-11-16 00:05:45 by ShihuaZhang
Additions:
""<img src="images/users/zsh.jpg" alt="zsh" style="float: right; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="images/users/wjg3.jpg" alt="zsh" style="float: right; margin: 1.0%; padding: 0.5%;">""

Revision [2259]

Edited on 2006-11-16 00:05:23 by ShihuaZhang
Additions:
""<img src="images/users/wjg3.jpg" alt="zsh" style="float: right; margin: 1.0%; padding: 0.5%;">""

Revision [2258]

Edited on 2006-11-16 00:02:22 by ShihuaZhang

No Differences

Revision [2257]

Edited on 2006-11-16 00:02:06 by ShihuaZhang
Additions:
<<"The whole of science is nothing more than a refinement of everyday thinking." ——Einstein
"In science, the important thing is to modify and change one’s ideas as science advances."——Herbert Spencer (1820–1903)
Deletions:
<<"The whole of science is nothing more than a refinement of everyday thinking." - Einstein
"In science, the important thing is to modify and change one’s ideas as science advances."-
Herbert Spencer (1820–1903)

Revision [2256]

Edited on 2006-11-16 00:00:12 by ShihuaZhang
Additions:
<<"The whole of science is nothing more than a refinement of everyday thinking." - Einstein
Deletions:
<<
"The whole of science is nothing more than a refinement of everyday thinking." - Einstein

Revision [2255]

Edited on 2006-11-15 23:59:44 by ShihuaZhang

No Differences

Revision [2254]

Edited on 2006-11-15 23:59:29 by ShihuaZhang

No Differences

Revision [2253]

Edited on 2006-11-15 23:59:03 by ShihuaZhang
Additions:
<<
"The good life is one inspired by love and guided by knowledge." ——Betrand Russell<<
Deletions:
<<"The good life is one inspired by love and guided by knowledge." ——Betrand Russell<<

Revision [2252]

Edited on 2006-11-15 23:58:35 by ShihuaZhang

No Differences

Revision [2251]

Edited on 2006-11-15 23:58:19 by ShihuaZhang
Additions:
<<"The good life is one inspired by love and guided by knowledge." ——Betrand Russell<<
Deletions:
"The good life is one inspired by love and guided by knowledge." ——Betrand Russell

Revision [2250]

Edited on 2006-11-15 23:57:43 by ShihuaZhang
Additions:
>> I am shihua >>
Deletions:
>>
I am shihua
>>

Revision [2249]

Edited on 2006-11-15 23:56:10 by ShihuaZhang

No Differences

Revision [2248]

Edited on 2006-11-15 23:55:53 by ShihuaZhang
Additions:
>>
I am shihua
>>

Revision [2247]

Edited on 2006-11-14 23:39:41 by ShihuaZhang
Additions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]], In press.
1) Luonan Chen, Ling-Yun Wu, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison. [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]], 2006, 6:18.
1) Shi-Hua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering. [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]], In press.
Deletions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]] In press.
1) Luonan Chen, Ling-Yun Wu, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison. [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]] 2006, 6:18.
1) Shi-Hua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering. [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]] In press.

Revision [2246]

Edited on 2006-11-14 23:38:58 by ShihuaZhang
Additions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]] In press.
1) Luonan Chen, Ling-Yun Wu, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison. [[http://www.biomedcentral.com/1472-6807/6/18 BMC Structural Biology]] 2006, 6:18.
1) Shi-Hua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering. [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]] In press.
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]].
Deletions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. Accepted by [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]].
1) Luonan Chen, Ling-Yun Wu, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison. Accepted by [[http://www.biomedcentral.com/bmcstructbiol/ BMC Structural Biology]].
1) Shi-Hua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering. Accepted by [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]].
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]]. In press.

Revision [2206]

Edited on 2006-10-31 17:42:47 by ShihuaZhang
Additions:
~- [[http://cyvision.if.sc.usp.br/~francisco/networks/softwares.htm Complex networks]]

Revision [2197]

Edited on 2006-10-30 00:00:16 by ShihuaZhang
Additions:
~- [[http://www.oakland.edu/enp/ Erdös Number]]

Revision [2188]

Edited on 2006-10-25 23:31:29 by ShihuaZhang
Additions:
=== How to ===

Revision [2187]

Edited on 2006-10-25 23:31:05 by ShihuaZhang
Additions:
~- [[http://www.cs.cmu.edu/~mleone/how-to.html]]

Revision [2163]

Edited on 2006-10-16 11:33:05 by ShihuaZhang
Additions:
"The good life is one inspired by love and guided by knowledge." ——Betrand Russell

Revision [2146]

Edited on 2006-10-08 16:00:34 by ShihuaZhang
Additions:
Institute of Applied Mathematics
Deletions:
Institute of Applied Mathematic

Revision [2145]

Edited on 2006-10-08 11:49:17 by ShihuaZhang
Additions:
"In science, the important thing is to modify and change one’s ideas as science advances."-
Herbert Spencer (1820–1903)

Revision [2138]

Edited on 2006-10-02 16:12:37 by ShihuaZhang
Additions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. Accepted by [[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational biology and chemistry]].
Deletions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. Accepted by Computational biology and chemistry.

Revision [2137]

Edited on 2006-10-02 16:11:30 by ShihuaZhang
Additions:
- Papers in Refereed International Journals and Conference Proceedings
Deletions:
- Papers in Refereed International Journals and Conference Proceedings

Revision [2136]

Edited on 2006-10-02 16:10:53 by ShihuaZhang
Additions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. Accepted by Computational biology and chemistry.
Deletions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. Accepted by Computational biology and chemistry.

Revision [2135]

Edited on 2006-10-02 16:10:16 by ShihuaZhang
Additions:
1) Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. Accepted by Computational biology and chemistry.

Revision [2132]

Edited on 2006-09-29 10:46:20 by ShihuaZhang
Additions:
"The whole of science is nothing more than a refinement of everyday thinking." - Einstein

Revision [2064]

Edited on 2006-09-09 20:28:03 by ShihuaZhang

No Differences

Revision [2063]

Edited on 2006-09-09 20:27:44 by ShihuaZhang
Additions:
1) Shihua Zhang, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks. Accepted by IEEE ICDM DMB 2006.

Revision [2053]

Edited on 2006-09-09 10:30:27 by ShihuaZhang
Additions:
I am a second year Ph.D. student with the Institute of Applied
Deletions:
I am a first year Ph.D. student with the Institute of Applied

Revision [2019]

Edited on 2006-09-02 11:08:38 by ShihuaZhang
Additions:
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://dx.doi.org/10.1007/11816102_55 LNCS]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
Deletions:
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.

Revision [1999]

Edited on 2006-08-28 12:20:11 by ShihuaZhang
Additions:
~- ''Homepage:'' http://zhangroup.aporc.org/ShihuaZhang
Deletions:
~- "Homepage:" http://zhangroup.aporc.org/ShihuaZhang

Revision [1997]

Edited on 2006-08-26 23:48:10 by ShihuaZhang
Deletions:
::c::----

Revision [1996]

Edited on 2006-08-26 23:47:48 by ShihuaZhang
Additions:
::c::----

Revision [1995]

Edited on 2006-08-26 23:47:25 by ShihuaZhang
Deletions:
::c::----

Revision [1994]

Edited on 2006-08-26 23:46:40 by ShihuaZhang

No Differences

Revision [1993]

Edited on 2006-08-26 23:46:21 by ShihuaZhang

No Differences

Revision [1963]

Edited on 2006-08-04 12:28:46 by ShihuaZhang
Additions:
=== Index and Journals ===
~-[[Journal Journal and Conference Information]]
Deletions:
~- [[Journal Journal and Conference Information]]

Revision [1962]

Edited on 2006-08-04 12:27:53 by ShihuaZhang
Additions:
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]]. In press.
Deletions:
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]]. In press.

Revision [1961]

Edited on 2006-08-04 12:27:22 by ShihuaZhang
Additions:

1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.

2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]]. In press.
Deletions:
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]]. In press.

Revision [1952]

Edited on 2006-08-01 22:03:10 by ShihuaZhang
Additions:
I am a first year Ph.D. student with the Institute of Applied
Deletions:
I am a second year Ph.D. student with the Institute of Applied

Revision [1951]

Edited on 2006-08-01 22:02:10 by ShihuaZhang
Additions:
Mathematics, [[www.amss.ac.cn AMSS]], at CAS. I am interested in modeling for
Deletions:
Mathematics, AMSS[[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. I am interested in modeling for

Revision [1950]

Edited on 2006-08-01 22:01:19 by ShihuaZhang
Additions:
====== Shihua Zhang======
I am a second year Ph.D. student with the Institute of Applied
Mathematics, AMSS[[www.amss.ac.cn Academy of Mathematics and Systems Science]], at CAS. I am interested in modeling for
Bioinformatics and theory for complex networks.
[[www.amss.ac.cn Academy of Mathematics and Systems Science]]
Deletions:
====== Shihua ZHang======
PhD student, [[www.amss.ac.cn Academy of Mathematics and Systems Science]]

Revision [1856]

Edited on 2006-07-18 22:35:16 by ShihuaZhang
Additions:
1) Luonan Chen, Ling-Yun Wu, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison. Accepted by [[http://www.biomedcentral.com/bmcstructbiol/ BMC Structural Biology]].

Revision [1846]

Edited on 2006-07-16 18:15:58 by ShihuaZhang
Additions:
~- [[Journal Journal and Conference Information]]
Deletions:
~- [[Journal Journal of Bioinformatics]]

Revision [1841]

Edited on 2006-07-16 10:54:34 by ShihuaZhang

No Differences

Revision [1840]

Edited on 2006-07-16 10:54:05 by ShihuaZhang
Additions:
~-[[http://portal.isiknowledge.com/portal.cgi?SID=J15i5I@1B2KoA3No6I6 ISI Web of Knowledge]]
~-[[http://www.engineeringvillage2.org.cn/controller/servlet/Controller?CID=quickSearch&database=1 EI Engineering Village 2]]

Revision [1839]

Edited on 2006-07-16 10:04:47 by ShihuaZhang
Additions:
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. [[http://ieeexplore.ieee.org/xpl/RecentCon.jsp?punumber=9639 IEEE EMBC 2006]]. In press.
Deletions:
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.

Revision [1838]

Edited on 2006-07-16 09:37:58 by ShihuaZhang
Additions:
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. [[http://www.springer.com/west/home/engineering?SGWID=4-175-22-173671714-0 ICIC06]], [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
Deletions:
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC06, [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.

Revision [1836]

Edited on 2006-07-14 19:54:36 by ShihuaZhang

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Revision [1833]

Edited on 2006-07-14 19:34:14 by ShihuaZhang
Deletions:
=== Journal of Bioinformatics ===
~- [[http://www.oxfordjournals.org/our_journals/bioinformatics/about.html Bioinformatics]]
~- [[http://www.biomedcentral.com/bmcbioinformatics/about/ BMC Bioinformatics]]
~- [[http://nar.oxfordjournals.org/ Nucleic Acids Research]]
~- [[http://compbiol.plosjournals.org/perlserv/?request=index-html&issn=1553-7358 Plos Computational biology]]
~- [[http://www3.interscience.wiley.com/cgi-bin/jhome/76510741?CRETRY=1&SRETRY=0 Proteomics]]
~- [[http://www3.interscience.wiley.com/cgi-bin/jhome/36176 Proteins: Structure, Function, and Bioinformatics]]
~-[[http://www.febsletters.org/ Febs Letters]]
~-[[http://www.febsjournal.org/ Febs Journal]]
~-[[http://www.proteinscience.org/ Protein Science]]
~-[[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational Biology and Chemistry]]
~-[[http://www.pnas.org/ Proceedings of the National Academy of Sciences (PNAS)]]
~-[[http://www.pubs.royalsoc.ac.uk/index.cfm?page=1065 Journal of the Royal Society Interface]]
~-[[http://www.computer.org/portal/site/transactions/menuitem.105363178fd279bc8a9ca0108bcd45f3/index.jsp?&pName=tcbb_home& IEEE/ACM Transactions on Computational Biology and Bioinformatics]]
~-[[http://www.springer.com/east/home/computer/lncs?SGWID=5-164-2-109319-0&SHORTCUT=www.springer.com/sgw/cda/frontpage/0,11855,5-164-2-109319-0,00.html LNCS-Transactions on Computational Systems Biology]]
~-[[http://www.ietdl.org/IP-SYB IEE Proceedings - Systems Biology]]
~-[[https://www.inderscience.com/browse/index.php?journalcode=ijbra International Journal of Bioinformatics Research and Applications (IJBRA)
]]
~-[[http://www.inderscience.com/browse/index.php?journalID=189 International Journal of Data Mining and Bioinformatics (IJDMB)]]
~-[[http://jcib.ujn.edu.cn/index.html International Journal of Computational Intelligent in Bioinformatics (IJCIB)]]
~-[[http://www.elsevier.com/wps/find/journaldescription.cws_home/622904/description#description Journal of Theoretical Biology]]
~-[[http://www.bioinfo.de/isb/articles.html In Silico Biology]]
~-[[http://journal.imbio.de/ Journal of Integrative Bioinformatics - JIB]]
~-[[http://www.elsevier.com/wps/find/journaldescription.cws_home/622857/description#description Journal of Biomedical Informatics
]]
~-[[http://www.elsevier.com/wps/find/journaldescription.cws_home/707637/description?navopenmenu=-2 Genomics, Proteomics and Bioinformatics]]

Revision [1832]

Edited on 2006-07-14 19:32:54 by ShihuaZhang
Additions:
~- [[Journal Journal of Bioinformatics]]
Deletions:
<<Visit [[Journal Journal of Bioinformatics]]
<<

Revision [1829]

Edited on 2006-07-14 19:21:35 by ShihuaZhang

No Differences

Revision [1828]

Edited on 2006-07-14 19:20:58 by ShihuaZhang
Additions:
<<Visit [[Journal Journal of Bioinformatics]]
Deletions:
<<Visit [[Journal_con Journal of Bioinformatics]]

Revision [1827]

Edited on 2006-07-14 19:20:16 by ShihuaZhang
Additions:
<<Visit [[Journal_con Journal of Bioinformatics]]
Deletions:
<<Visit [[Journal_and_Conference Journal of Bioinformatics]]

Revision [1826]

Edited on 2006-07-14 19:19:11 by ShihuaZhang
Additions:
<<Visit [[Journal_and_Conference Journal of Bioinformatics]]
Deletions:
<<Visit [[j Journal of Bioinformatics]]

Revision [1824]

Edited on 2006-07-14 19:17:02 by ShihuaZhang
Additions:
<<Visit [[j Journal of Bioinformatics]]
Deletions:
<<Visit [[Journal of Bioinformatics]]

Revision [1823]

Edited on 2006-07-14 19:16:44 by ShihuaZhang
Additions:
<<Visit [[Journal of Bioinformatics]]
<<
Deletions:
<<[[Journal of Bioinformatics]]

Revision [1822]

Edited on 2006-07-14 19:13:07 by ShihuaZhang
Additions:
<<[[Journal of Bioinformatics]]

Revision [1821]

Edited on 2006-07-14 13:57:00 by ShihuaZhang
Additions:
1) Shi-Hua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering. Accepted by [[http://www.elsevier.com/wps/find/journaldescription.cws_home/505702/description Physica A: Statistical Mechanics and its Applications]].

Revision [1820]

Edited on 2006-07-13 20:53:29 by ShihuaZhang

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Revision [1819]

Edited on 2006-07-13 20:52:45 by ShihuaZhang
Additions:
~-[[http://www.pnas.org/ Proceedings of the National Academy of Sciences (PNAS)]]

Revision [1818]

Edited on 2006-07-13 20:43:29 by ShihuaZhang
Additions:
~- ''E-mail:'' zsh@amss.ac.cn
Deletions:
~- ''E-mail:'' zsh@amss.ac.cn

Revision [1817]

Edited on 2006-07-13 20:42:59 by ShihuaZhang
Additions:
~- "Homepage:" http://zhangroup.aporc.org/ShihuaZhang
Deletions:
~- "Homapage:" http://zhangroup.aporc.org/ShihuaZhang

Revision [1816]

Edited on 2006-07-13 20:42:25 by ShihuaZhang

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Revision [1815]

Edited on 2006-07-13 20:42:03 by ShihuaZhang
Additions:
====== Shihua ZHang======
Deletions:
====== Dr. Shihua ZHang======

Revision [1814]

Edited on 2006-07-13 20:41:41 by ShihuaZhang
Additions:
PhD student, [[www.amss.ac.cn Academy of Mathematics and Systems Science]]
[[http://www.gucas.ac.cn/gscascn/index.aspx Graduate University of Chinese Academy of Science]], China
Deletions:
PhD student, [[www.amss.ac.cn Academy of Mathematics and Systems Science
Chinese Academy of Science, China]]

Revision [1813]

Edited on 2006-07-13 20:39:22 by ShihuaZhang
Deletions:
""<a href="mailto:chen@elec.osaka-sandai.ac.jp">chen@elec.osaka-sandai.ac.jp</a>""

Revision [1812]

Edited on 2006-07-13 20:38:11 by ShihuaZhang
Additions:
PhD student, [[www.amss.ac.cn Academy of Mathematics and Systems Science
Chinese Academy of Science, China]]
Deletions:
Professor, [[http://www.osaka-sandai.ac.jp Osaka Sangyo University, Japan]]

Revision [1811]

Edited on 2006-07-13 20:36:36 by ShihuaZhang
Deletions:
====== S.-H Zhang======
====== 张世华 博士研究生 ======
{{colour c="purple" text="Tel(o)"}} : 86-10-62571860
{{colour c="purple" text="Tel(d)"}} : 86-10-82683683
{{colour c="purple" text="Email"}} : zsh@amss.ac.cn
{{colour c="purple" text="Address"}} : No.55, Zhongguancun East Road, Beijing 100080, China

Revision [1810]

Edited on 2006-07-13 20:35:47 by ShihuaZhang
Additions:
====== Dr. Shihua ZHang======
~- ''Name:'' Shihua ZHANG
~- ''Date of birth:'' May 1980
~- ''Current position:'' Phd Candidate in AMSS, CAS.
~- ''Present address (office):'' No.55, Zhongguancun East Road, Beijing 100080, China
~- ''Phone (office):'' 010-62571860.
~- ''E-mail:'' zsh@amss.ac.cn
~- "Homapage:" http://zhangroup.aporc.org/ShihuaZhang
Deletions:
====== Professor Luonan Chen ======
~- ''Name:'' Luonan CHEN
~- ''Date of birth:'' 8 December 1962
~- ''Marital status:'' Married
~- ''Current position:'' Professor at the Department of Electrical Engineering and Electronics, Osaka Sangyo University.
~- ''Present address (office):'' Department of Electrical Engineering and Electronics, Osaka Sangyo University, Nakagaito 3-1-1, Daito, Osaka 574-8530, Japan
~- ''Phone (office):'' 072-875-3001.
~- ''E-mail:'' chen@elec.osaka-sandai.ac.jp or luonanchen@hotmail.com
~- "Homapage:" http://intelligent.eic.osaka-sandai.ac.jp

Revision [1809]

Edited on 2006-07-13 20:31:27 by ShihuaZhang
Additions:
====== Professor Luonan Chen ======
""<a href="mailto:chen@elec.osaka-sandai.ac.jp">chen@elec.osaka-sandai.ac.jp</a>""
Professor, [[http://www.osaka-sandai.ac.jp Osaka Sangyo University, Japan]]
~- ''Name:'' Luonan CHEN
~- ''Sex:'' Male
~- ''Date of birth:'' 8 December 1962
~- ''Marital status:'' Married
~- ''Current position:'' Professor at the Department of Electrical Engineering and Electronics, Osaka Sangyo University.
~- ''Present address (office):'' Department of Electrical Engineering and Electronics, Osaka Sangyo University, Nakagaito 3-1-1, Daito, Osaka 574-8530, Japan
~- ''Phone (office):'' 072-875-3001.
~- ''E-mail:'' chen@elec.osaka-sandai.ac.jp or luonanchen@hotmail.com
~- "Homapage:" http://intelligent.eic.osaka-sandai.ac.jp

Revision [1808]

Edited on 2006-07-13 20:18:28 by ShihuaZhang
Additions:
~-[[http://www.springer.com/east/home/computer/lncs?SGWID=5-164-2-109319-0&SHORTCUT=www.springer.com/sgw/cda/frontpage/0,11855,5-164-2-109319-0,00.html LNCS-Transactions on Computational Systems Biology]]
Deletions:
~-[[http://www.springer.com/east/home/computer/lncs?SGWID=5-164-2-109319-0&SHORTCUT=www.springer.com/sgw/cda/frontpage/0,11855,5-164-2-109319-0,00.html LNCS journal Transactions on Computational Systems Biology]]

Revision [1807]

Edited on 2006-07-13 20:18:04 by ShihuaZhang
Additions:
~-[[http://www.ietdl.org/IP-SYB IEE Proceedings - Systems Biology]]

Revision [1806]

Edited on 2006-07-13 20:13:01 by ShihuaZhang
Additions:
~-[[http://www.elsevier.com/wps/find/journaldescription.cws_home/622857/description#description Journal of Biomedical Informatics
Deletions:
~-[[http://www.elsevier.com/wps/find/journaldescription.cws_home/622857/description#description JOURNAL OF BIOMEDICAL INFORMATICS

Revision [1805]

Edited on 2006-07-13 20:12:11 by ShihuaZhang
Additions:
~-[[http://www.springer.com/east/home/computer/lncs?SGWID=5-164-2-109319-0&SHORTCUT=www.springer.com/sgw/cda/frontpage/0,11855,5-164-2-109319-0,00.html LNCS journal Transactions on Computational Systems Biology]]

Revision [1804]

Edited on 2006-07-13 20:09:48 by ShihuaZhang
Additions:
~-[[http://www.pubs.royalsoc.ac.uk/index.cfm?page=1065 Journal of the Royal Society Interface]]
~-[[http://www.computer.org/portal/site/transactions/menuitem.105363178fd279bc8a9ca0108bcd45f3/index.jsp?&pName=tcbb_home& IEEE/ACM Transactions on Computational Biology and Bioinformatics]]
~-[[https://www.inderscience.com/browse/index.php?journalcode=ijbra International Journal of Bioinformatics Research and Applications (IJBRA)
]]
~-[[http://www.inderscience.com/browse/index.php?journalID=189 International Journal of Data Mining and Bioinformatics (IJDMB)]]
~-[[http://jcib.ujn.edu.cn/index.html International Journal of Computational Intelligent in Bioinformatics (IJCIB)]]
~-[[http://www.elsevier.com/wps/find/journaldescription.cws_home/622904/description#description Journal of Theoretical Biology]]
~-[[http://www.bioinfo.de/isb/articles.html In Silico Biology]]
~-[[http://journal.imbio.de/ Journal of Integrative Bioinformatics - JIB]]
~-[[http://www.elsevier.com/wps/find/journaldescription.cws_home/622857/description#description JOURNAL OF BIOMEDICAL INFORMATICS
]]
~-[[http://www.elsevier.com/wps/find/journaldescription.cws_home/707637/description?navopenmenu=-2 Genomics, Proteomics and Bioinformatics]]

Revision [1803]

Edited on 2006-07-13 19:53:51 by ShihuaZhang

No Differences

Revision [1802]

Edited on 2006-07-13 19:52:40 by ShihuaZhang
Additions:
~-[[http://www.febsletters.org/ Febs Letters]]
~-[[http://www.febsjournal.org/ Febs Journal]]
~-[[http://www.proteinscience.org/ Protein Science]]
~-[[http://www.elsevier.com/wps/find/journaldescription.cws_home/627320/description#description Computational Biology and Chemistry]]

Revision [1801]

Edited on 2006-07-13 19:46:28 by ShihuaZhang
Additions:
~- [[http://www.oxfordjournals.org/our_journals/bioinformatics/about.html Bioinformatics]]
~- [[http://nar.oxfordjournals.org/ Nucleic Acids Research]]
~- [[http://compbiol.plosjournals.org/perlserv/?request=index-html&issn=1553-7358 Plos Computational biology]]
~- [[http://www3.interscience.wiley.com/cgi-bin/jhome/76510741?CRETRY=1&SRETRY=0 Proteomics]]
~- [[http://www3.interscience.wiley.com/cgi-bin/jhome/36176 Proteins: Structure, Function, and Bioinformatics]]

Revision [1800]

Edited on 2006-07-13 18:19:08 by ShihuaZhang
Additions:
~- [[http://www.biomedcentral.com/bmcbioinformatics/about/ BMC Bioinformatics]]

Revision [1799]

Edited on 2006-07-13 18:17:28 by ShihuaZhang

No Differences

Revision [1798]

Edited on 2006-07-13 18:16:59 by ShihuaZhang

No Differences

Revision [1797]

Edited on 2006-07-13 18:15:53 by ShihuaZhang
Additions:
1) Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.
Deletions:
1) Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.

Revision [1796]

Edited on 2006-07-13 18:15:23 by ShihuaZhang
Additions:
1) Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.
Deletions:
1) Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.

Revision [1795]

Edited on 2006-07-13 18:14:56 by ShihuaZhang
Additions:
3) Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
4) Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, 285-295, 2005.
1) Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.
Deletions:
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, 285-295, 2005.
~-Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.

Revision [1794]

Edited on 2006-07-13 18:14:04 by ShihuaZhang
Additions:
- Papers in Refereed International Journals and Conference Proceedings
2) Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.
- Papers in Refereed Chinese Journals and Conference Proceedings
Deletions:
- Papers in Refereed International Journals and Conference Proceedings
~-Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.
- Papers in Refereed Chinese Journals and Conference Proceedings

Revision [1793]

Edited on 2006-07-13 18:13:20 by ShihuaZhang
Additions:
- Papers in Refereed International Journals and Conference Proceedings
- Papers in Refereed Chinese Journals and Conference Proceedings
Deletions:
~- Papers in Refereed International Journals and Conference Proceedings
~-Papers in Refereed Chinese Journals and Conference Proceedings

Revision [1792]

Edited on 2006-07-13 18:12:42 by ShihuaZhang
Additions:
1) Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC06, [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
Deletions:
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC06, [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.

Revision [1791]

Edited on 2006-07-13 18:11:54 by ShihuaZhang
Additions:
~-Papers in Refereed Chinese Journals and Conference Proceedings
Deletions:
~- Papers in Refereed Chinese Journals and Conference Proceedings

Revision [1790]

Edited on 2006-07-13 18:10:55 by ShihuaZhang

No Differences

Revision [1789]

Edited on 2006-07-13 18:10:30 by ShihuaZhang
Additions:
=== Journal of Bioinformatics ===

Revision [1788]

Edited on 2006-07-13 18:03:53 by ShihuaZhang
Additions:
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16(2), 114-124, 2005.
Deletions:
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16.2, 114-124, 2005.

Revision [1787]

Edited on 2006-07-13 18:03:23 by ShihuaZhang
Additions:
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16.2, 114-124, 2005.
Deletions:
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16. 2, 114-124, 2005.

Revision [1786]

Edited on 2006-07-13 18:03:07 by ShihuaZhang
Additions:
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. [[http://www.nslij-genetics.org/j/geninfo.html Genome Informatics]], 16. 2, 114-124, 2005.
Deletions:
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. Genome Informatics, 16. 2, 114-124, 2005.

Revision [1785]

Edited on 2006-07-13 18:00:33 by ShihuaZhang
Additions:
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC06, [[http://www.springer.com/west/home/life+sci/bioinformatics?SGWID=4-10031-69-173623629-0 Lecture Notes in Bioinformatics]], 4115, 514-524, 2006.
Deletions:
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC06, Lecture Notes in Bioinformatics, 4115, 514-524, 2006.

Revision [1784]

Edited on 2006-07-13 17:59:04 by ShihuaZhang
Additions:
~-Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. Genome Informatics, 16. 2, 114-124, 2005.
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, 285-295, 2005.
Deletions:
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, 285-295, 2005.
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. Genome Informatics, 16. 2, 114-124, 2005.
~-Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.

Revision [1783]

Edited on 2006-07-13 17:56:34 by ShihuaZhang
Additions:
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC06, Lecture Notes in Bioinformatics, 4115, 514-524, 2006.
Deletions:
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC 2006, Lecture Notes in Bioinformatics, 4115, 514-524, 2006.

Revision [1782]

Edited on 2006-07-13 17:56:05 by ShihuaZhang
Additions:
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. [[http://www.jsbi.org/journal/GIW05/GIW05F032.html Comparison of Protein Structures by Multi-Objective Optimization]]. Genome Informatics, 16. 2, 114-124, 2005.
Deletions:
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, 16. 2, 114-124, 2005.

Revision [1781]

Edited on 2006-07-13 17:54:46 by ShihuaZhang
Additions:
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, 16. 2, 114-124, 2005.
~-Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.
~-Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.
Deletions:
~- Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, 16. 2, 114-124, 2005.
~- Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.
~- Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.

Revision [1780]

Edited on 2006-07-13 17:53:45 by ShihuaZhang
Additions:
~- Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.
~- Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.
Deletions:
~- Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.
~- Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.

Revision [1779]

Edited on 2006-07-13 17:52:14 by ShihuaZhang
Additions:
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC 2006, Lecture Notes in Bioinformatics, 4115, 514-524, 2006.
~- Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, 16. 2, 114-124, 2005.
~- Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.
~- Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.
Deletions:
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC 2006, Lecture Notes in Bioinformatics, 4115, 514-524, 2006.
~- Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, 16. 2, 114-124, 2005.
~- Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.
~- Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.

Revision [1778]

Edited on 2006-07-13 17:51:41 by ShihuaZhang
Additions:
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC 2006, Lecture Notes in Bioinformatics, 4115, 514-524, 2006.
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, 285-295, 2005.
~- Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, 16. 2, 114-124, 2005.
Deletions:
~- Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC 2006, Lecture Notes in Bioinformatics, 4115, 514–524, 2006.
~- Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, pp. 285-295, 2005.
~- Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, Vol. 16, No. 2, pp. 114-124, 2005.

Revision [1777]

Edited on 2006-07-13 17:49:18 by ShihuaZhang
Additions:
~- Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC 2006, Lecture Notes in Bioinformatics, 4115, 514–524, 2006.
~- Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, pp. 285-295, 2005.
~- Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, Vol. 16, No. 2, pp. 114-124, 2005.
~- Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC 2006. In press.
~- Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics. In press.
Deletions:
~- Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC 2006, Lecture Notes in Bioinformatics, 4115, 514–524, 2006.
~- Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, pp. 285-295, 2005.
~- Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, Vol. 16, No. 2, pp. 114-124, 2005.
~- Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. Accepted by IEEE EMBC 2006.
~- Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, Shi-Hua Zhang and Luonan Chen. Inferring Protein-Protein Interactions by Combinatorial Models. (Accepted by WC 2006).
~- Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. (Accepted by “Bioinformatics” in chinese)

Revision [1776]

Edited on 2006-07-13 17:46:29 by ShihuaZhang
Additions:
~- Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. ICIC 2006, Lecture Notes in Bioinformatics, 4115, 514–524, 2006.
Deletions:
~- Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. D.-S. Huang, K. Li, and G.W. Irwin (Eds.): ICIC 2006, Lecture Notes in Bioinformatics, 4115, pp. 514–524, 2006.

Revision [1775]

Edited on 2006-07-13 17:45:48 by ShihuaZhang
Additions:
~- Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. D.-S. Huang, K. Li, and G.W. Irwin (Eds.): ICIC 2006, Lecture Notes in Bioinformatics, 4115, pp. 514–524, 2006.
~- Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, pp. 285-295, 2005.
~- Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, Vol. 16, No. 2, pp. 114-124, 2005.
~- Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. Accepted by IEEE EMBC 2006.
~- Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, Shi-Hua Zhang and Luonan Chen. Inferring Protein-Protein Interactions by Combinatorial Models. (Accepted by WC 2006).
~- Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. (Accepted by “Bioinformatics” in chinese)
Deletions:
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. D.-S. Huang, K. Li, and G.W. Irwin (Eds.): ICIC 2006, Lecture Notes in Bioinformatics, 4115, pp. 514–524, 2006.
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, pp. 285-295, 2005.
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, Vol. 16, No. 2, pp. 114-124, 2005.
~-Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. Accepted by IEEE EMBC 2006.
~-Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, Shi-Hua Zhang and Luonan Chen. Inferring Protein-Protein Interactions by Combinatorial Models. (Accepted by WC 2006).
~-Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. (Accepted by “Bioinformatics” in chinese)

Revision [1774]

Edited on 2006-07-13 17:44:49 by ShihuaZhang
Additions:
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. D.-S. Huang, K. Li, and G.W. Irwin (Eds.): ICIC 2006, Lecture Notes in Bioinformatics, 4115, pp. 514–524, 2006.
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, pp. 285-295, 2005.
Deletions:
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, pp. 285-295, 2005.
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. D.-S. Huang, K. Li, and G.W. Irwin (Eds.): ICIC 2006, LNBI 4115, pp. 514–524, 2006. (Lecture Notes in Bioinformatics)

Revision [1773]

Edited on 2006-07-13 17:42:45 by ShihuaZhang
Additions:
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. [[http://portal.isiknowledge.com/portal.cgi?DestApp=ISIP&Func=Frame A framwork for structural similarity search in proteins]] . ISORA05, Lecture Notes in Operations Research, 5, pp. 285-295, 2005.
Deletions:
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. A framwork for structural similarity search in protein. Operations Research and Its Applications, Lecture Notes in Operations Research, 5, pp. 285-295, World Publishing Corporation, Beijing, 2005.

Revision [1772]

Edited on 2006-07-13 17:37:26 by ShihuaZhang
Additions:
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. A framwork for structural similarity search in protein. Operations Research and Its Applications, Lecture Notes in Operations Research, 5, pp. 285-295, World Publishing Corporation, Beijing, 2005.
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, Vol. 16, No. 2, pp. 114-124, 2005.
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. D.-S. Huang, K. Li, and G.W. Irwin (Eds.): ICIC 2006, LNBI 4115, pp. 514–524, 2006. (Lecture Notes in Bioinformatics)
~-Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. Accepted by IEEE EMBC 2006.
~-Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, Shi-Hua Zhang and Luonan Chen. Inferring Protein-Protein Interactions by Combinatorial Models. (Accepted by WC 2006).
~- Papers in Refereed Chinese Journals and Conference Proceedings
~-Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. (Accepted by “Bioinformatics” in chinese)
Deletions:
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. A framwork for structural similarity search in protein. Operations Research and Its Applications, Lecture Notes in Operations Research, 5, pp. 285-295, World Publishing Corporation, Beijing, 2005.
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, Vol. 16, No. 2, pp. 114-124, 2005.
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. D.-S. Huang, K. Li, and G.W. Irwin (Eds.): ICIC 2006, LNBI 4115, pp. 514–524, 2006. (Lecture Notes in Bioinformatics)
~-Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. Accepted by IEEE EMBC 2006.
~-Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, Shi-Hua Zhang and Luonan Chen. Inferring Protein-Protein Interactions by Combinatorial Models. (Accepted by WC 2006).
~-Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. (Accepted by “Bioinformatics” in chinese)
~-Shi-Hua Zhang, Ling-Yun Wu, Guangxu Jin, Xiang-Sun Zhang. A Simple Method for Structural Classification of Proteins. Proceedings of ORSC 2006, pp:290-295, Global-Link Informatics Limited, Hong Kong.

Revision [1770]

Edited on 2006-07-13 17:35:07 by ShihuaZhang
Additions:
~-Shi-Hua Zhang, De-Gang Liu and Xiang-Sun Zhang. A framwork for structural similarity search in protein. Operations Research and Its Applications, Lecture Notes in Operations Research, 5, pp. 285-295, World Publishing Corporation, Beijing, 2005.
~-Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shuihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, Vol. 16, No. 2, pp. 114-124, 2005.
~-Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. D.-S. Huang, K. Li, and G.W. Irwin (Eds.): ICIC 2006, LNBI 4115, pp. 514–524, 2006. (Lecture Notes in Bioinformatics)
~-Zhenping Li, Yong Wang, Shihua Zhang and Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. Accepted by IEEE EMBC 2006.
~-Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, Shi-Hua Zhang and Luonan Chen. Inferring Protein-Protein Interactions by Combinatorial Models. (Accepted by WC 2006).
~-Shi-Hua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. (Accepted by “Bioinformatics” in chinese)
~-Shi-Hua Zhang, Ling-Yun Wu, Guangxu Jin, Xiang-Sun Zhang. A Simple Method for Structural Classification of Proteins. Proceedings of ORSC 2006, pp:290-295, Global-Link Informatics Limited, Hong Kong.

Revision [1750]

Edited on 2006-07-10 16:18:23 by ShihuaZhang
Additions:
~- Papers in Refereed International Journals and Conference Proceedings
Deletions:
~- International Journals and Refereed Conferences

Revision [1749]

Edited on 2006-07-10 16:17:14 by ShihuaZhang
Additions:
~- International Journals and Refereed Conferences

Revision [1741]

Edited on 2006-06-29 11:51:31 by ShihuaZhang
Deletions:
""<img src="images/users/zsh.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [1577]

Edited on 2006-03-23 11:58:06 by ShihuaZhang
Additions:
~- Complex networks
Deletions:

Revision [1546]

Edited on 2006-03-09 11:37:47 by ShihuaZhang
Additions:
{{colour c="purple" text="Tel(d)"}} : 86-10-82683683
Deletions:
{{colour c="purple" text="Tel(d)"}} : 86-10-82682938

Revision [1234]

Edited on 2005-10-27 17:25:10 by LingyunWu
Additions:
""<img src="images/users/zsh.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/zsh.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [1191]

Edited on 2005-10-18 17:11:51 by LingyunWu
Additions:
{{colour c="purple" text="Address"}} : No.55, Zhongguancun East Road, Beijing 100080, China
Deletions:
{{colour c="purple" text="Address"}} : No.55, ZhongGuanCun East Road, Beijing 100080, China

Revision [1190]

Edited on 2005-10-18 17:11:37 by LingyunWu
Additions:
""<img src="uploads/UserImages/zsh.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/zsh0.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [1149]

Edited on 2005-10-06 17:04:24 by ShihuaZhang
Additions:
""<img src="uploads/UserImages/zsh0.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/zsh.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [1148]

Edited on 2005-10-06 17:00:38 by ShihuaZhang
Deletions:
~-NO

Revision [1090]

Edited on 2005-09-18 18:02:46 by ZhipingLiu
Additions:
""<img src="uploads/UserImages/zsh.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/zsh-s.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [1057]

Edited on 2005-09-16 19:42:23 by ShihuaZhang

No Differences

Revision [1056]

Edited on 2005-09-16 19:41:01 by ShihuaZhang
Additions:
~-Protein-protein interaction(PPI) network
~-Structural similarity in proteins
Deletions:
~------Protein-protein interaction(PPI) network
Structural similarity in proteins

Revision [1055]

Edited on 2005-09-16 19:37:19 by ShihuaZhang
Additions:
{{colour c="purple" text="Address"}} : No.55, ZhongGuanCun East Road, Beijing 100080, China
Deletions:
{{colour c="purple" text="Address"}} : East Road No.55, Zhongguancun, Beijing 100080, China

Revision [1054]

Edited on 2005-09-16 19:35:41 by ShihuaZhang
Additions:

----
Deletions:


Revision [1053]

Edited on 2005-09-16 19:35:04 by ShihuaZhang
Additions:
~------Protein-protein interaction(PPI) network
Structural similarity in proteins
Deletions:
~------Protein-protein interaction(PPI) network analysis

Revision [1052]

Edited on 2005-09-16 19:31:49 by ShihuaZhang
Additions:
~------Protein-protein interaction(PPI) network analysis

Revision [1051]

Edited on 2005-09-16 19:29:59 by ShihuaZhang
Additions:
=== {{colour c="green" text="Publication"}} ===
~-NO
Deletions:

Revision [1050]

Edited on 2005-09-16 19:29:09 by ShihuaZhang

No Differences

Revision [1049]

Edited on 2005-09-16 19:28:36 by ShihuaZhang
Additions:
{{colour c="purple" text="Tel(o)"}} : 86-10-62571860
{{colour c="purple" text="Tel(d)"}} : 86-10-82682938
Deletions:
{{colour c="purple" text="Tel"}} : 86-10-82682938

Revision [1048]

Edited on 2005-09-16 19:23:35 by ShihuaZhang
Additions:
Institute of Applied Mathematic
Academy of Mathematics and Systems Science
Chinese Academy of Science
Deletions:
Institute of Applied Mathamatics
Academy of Mathematics & Systems Science, CAS,

Revision [1046]

Edited on 2005-09-16 19:20:52 by ShihuaZhang

No Differences

Revision [1045]

Edited on 2005-09-16 19:20:29 by ShihuaZhang
Additions:
Institute of Applied Mathamatics

Revision [1044]

Edited on 2005-09-16 19:19:32 by ShihuaZhang
Additions:
Academy of Mathematics & Systems Science, CAS,
{{colour c="purple" text="Address"}} : East Road No.55, Zhongguancun, Beijing 100080, China
{{colour c="purple" text="Tel"}} : 86-10-82682938
{{colour c="purple" text="Email"}} : zsh@amss.ac.cn
Deletions:
Academy of Mathematics & Systems Science, Chinese Academy of Sciences, Beijing 100080, China
''Tel:'' 86-10-82682938
''Email:'' zsh@amss.ac.cn

Revision [1043]

Edited on 2005-09-16 19:17:01 by ShihuaZhang
Additions:

Revision [1042]

Edited on 2005-09-16 19:16:37 by ShihuaZhang
Additions:
=== {{colour c="green" text=" Educational Background "}} ===
Deletions:
=== Educational Background ===
=== Research Areas and Interests ===

Revision [1041]

Edited on 2005-09-16 19:15:51 by ShihuaZhang
Additions:
=== {{colour c="green" text="Research Areas and Interests"}} ===
~- Bioinformatics

Revision [1025]

Edited on 2005-09-16 16:44:00 by ShihuaZhang
Additions:
""<img src="uploads/UserImages/zsh-s.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/zsh.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [954]

Edited on 2005-09-15 23:40:10 by ShihuaZhang
Deletions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and []. Although i have tried to make some papers about this, i don't think they are very good. A comprehensive survey can been seen in [].

Revision [953]

Edited on 2005-09-15 23:39:57 by ShihuaZhang
Additions:
====== 张世华 博士研究生 ======
Deletions:
====== 张世华 研究生 ======

Revision [948]

Edited on 2005-09-15 23:33:29 by ShihuaZhang
Additions:
""<img src="uploads/UserImages/zsh.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/ZSH.JPG" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [947]

Edited on 2005-09-15 23:28:36 by ShihuaZhang
Additions:
""<img src="uploads/UserImages/ZSH.JPG" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/ZSH.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [946]

Edited on 2005-09-15 23:27:45 by ShihuaZhang
Additions:
""<img src="uploads/UserImages/ZSH.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/zsh.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [829]

Edited on 2005-07-26 15:02:04 by LingyunWu
Additions:
""<img src="uploads/UserImages/zsh.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/ZSH.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [786]

Edited on 2005-07-19 12:43:26 by ShihuaZhang
Additions:
~- [[http://mathworld.wolfram.com/ Mathworld]]

Revision [785]

Edited on 2005-07-18 00:31:25 by ShihuaZhang
Additions:
""<img src="uploads/UserImages/ZSH.jpg" alt="S.-H Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/ZSH.jpg" alt="Shi-hua Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [784]

Edited on 2005-07-18 00:30:58 by ShihuaZhang
Additions:
""<img src="uploads/UserImages/ZSH.jpg" alt="Shi-hua Zhang" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/" alt="ZSH" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [783]

Edited on 2005-07-13 13:31:20 by ShihuaZhang
Additions:
~- [[http://stommel.tamu.edu/~baum/toolboxes.html Matlab toolbox]]
Deletions:
~- [[http://aloft.ctex.org/gallery/ Photo Album]]

Revision [730]

Edited on 2005-07-08 12:38:37 by ShihuaZhang
Additions:
~- [[http://www.binf.umn.edu/whatsbinf.html Bioinformatics]]
Deletions:
~- [[http://aloft.ctex.org/blog/ Personal Blog]]

Revision [663]

Edited on 2005-07-01 17:30:44 by ShihuaZhang
Additions:
----
=== Links ===
~- [[http://aloft.ctex.org/blog/ Personal Blog]]
~- [[http://aloft.ctex.org/gallery/ Photo Album]]
~- [[http://www.ctex.org CTEX.ORG]]

Revision [651]

Edited on 2005-06-29 22:08:41 by ShihuaZhang
Additions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and []. Although i have tried to make some papers about this, i don't think they are very good. A comprehensive survey can been seen in [].
Deletions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and []. Although i have tried to make some papers about this, i don't think they are very good. A comprehensive survey can been seen in [].

Revision [650]

Edited on 2005-06-29 21:57:28 by ShihuaZhang
Additions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and []. Although i have tried to make some papers about this, i don't think they are very good. A comprehensive survey can been seen in [].
Deletions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and []. Although i have tried to make some papers about this, i don't
think they are quite good. A comprehensive survey can been seen in [].

Revision [649]

Edited on 2005-06-29 21:56:58 by ShihuaZhang
Additions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and []. Although i have tried to make some papers about this, i don't
Deletions:
~- Bioinformatics

Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and []. Although i have tried to make some papers about this, i don't

Revision [648]

Edited on 2005-06-29 21:55:58 by ShihuaZhang
Additions:
think they are quite good. A comprehensive survey can been seen in [].
Deletions:
think they are quite good.

Revision [647]

Edited on 2005-06-29 21:53:51 by ShihuaZhang
Additions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and []. Although i have tried to make some papers about this, i don't
Deletions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and []. Although i have tried to make some papers about this, i don't

Revision [646]

Edited on 2005-06-29 21:53:30 by ShihuaZhang
Additions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and []. Although i have tried to make some papers about this, i don't
think they are quite good.
Deletions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and [].

Revision [645]

Edited on 2005-06-29 21:47:14 by ShihuaZhang
Additions:

Revision [644]

Edited on 2005-06-29 21:46:33 by ShihuaZhang
Additions:
Recently, I read and think some things about structure similarities in proteins including structrue alignment and mining substructure. More information about this can be seen in [] and [].

Revision [643]

Edited on 2005-06-29 21:41:41 by ShihuaZhang
Deletions:
=== Hobbies and pastime===
~- Some Books：
History book:

=== Thinking=====

1
2

Revision [642]

Edited on 2005-06-29 21:22:19 by ShihuaZhang
Additions:
1
Deletions:
1 困惑源自想的太多，而又没有想通。

Revision [641]

Edited on 2005-06-29 19:16:29 by ShihuaZhang
Additions:
1 困惑源自想的太多，而又没有想通。
2
Deletions:
1. 困惑源自想的太多，而没有想通。

Revision [640]

Edited on 2005-06-29 19:15:42 by ShihuaZhang
Additions:

Revision [639]

Edited on 2005-06-29 19:15:21 by ShihuaZhang
Additions:
1. 困惑源自想的太多，而没有想通。

Revision [638]

Edited on 2005-06-29 19:12:13 by ShihuaZhang
Additions:
=== Thinking=====
Deletions:
=== Think=====

Revision [637]

Edited on 2005-06-29 19:11:37 by ShihuaZhang
Additions:
=== Hobbies and pastime===
~- Some Books：
History book:
=== Think=====
Deletions:
=== Hobbies ===
~- History, Pingpong, Reading, etc.
Some Books：
History book:

Revision [636]

Edited on 2005-06-29 19:06:50 by ShihuaZhang
Additions:
Some Books：
History book:
Deletions:

我喜欢的书：

Revision [635]

Edited on 2005-06-29 19:02:50 by ShihuaZhang
Additions:
我喜欢的书：
Deletions:
我喜欢的书：

Revision [634]

Edited on 2005-06-29 19:01:59 by ShihuaZhang
Additions:

我喜欢的书：
Deletions:
=== My hometown ===

Revision [633]

Edited on 2005-06-29 19:00:36 by ShihuaZhang
Additions:
=== My hometown ===

Revision [632]

Edited on 2005-06-29 18:57:05 by ShihuaZhang
Additions:
""<img src="uploads/UserImages/" alt="ZSH" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/" alt="Zhong-Wei Zhan" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [631]

Edited on 2005-06-29 18:56:23 by ShihuaZhang
Additions:
====== S.-H Zhang======
Deletions:
====== ShiHua Zhang======

Revision [630]

Edited on 2005-06-29 18:54:59 by ShihuaZhang
Additions:
""<img src="uploads/UserImages/" alt="Zhong-Wei Zhan" style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="uploads/UserImages/zhongweizhan.jpg" alt="Zhong-Wei Zhan" style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [629]

Edited on 2005-06-29 18:54:32 by ShihuaZhang
Additions:
====== ShiHua Zhang======
Deletions:
====== ShiHua Zhang, Ph.D. candidate ======

Revision [628]

Edited on 2005-06-29 18:54:06 by ShihuaZhang
Deletions:
~- Linear and non-linear optimization theory, algorithm and application
~- Neural networks
~- Logistics and Supply Chain Management

Revision [627]

Edited on 2005-06-29 18:53:27 by ShihuaZhang
Additions:
~- History, Pingpong, Reading, etc.
Deletions:
=== Awards ===
~- 2002-2003, Fellowship, Chinese Academy of Sciences
~- History, Pingpong, Football, etc.

Revision [626]

Edited on 2005-06-29 18:52:38 by ShihuaZhang
Additions:
====== ShiHua Zhang, Ph.D. candidate ======
====== 张世华 研究生 ======
''Tel:'' 86-10-82682938
''Email:'' zsh@amss.ac.cn
~- B.S., 1999.9 ~ 2003.7, YunNan University.
~- Ph.D., 2003.9 ~ Now, Academy of Mathematics & System Sciences, CAS .
Deletions:
====== Zhong-Wei Zhan, Ph.D. candidate ======
====== 詹钟炜 博士研究生 ======
''Tel:'' 86-10-82681046
''Email:'' zhanzw@mail.amss.ac.cn
Z.-W. Zhan was born on 9th, Aug., 1978 in Beijing. He received his B.S. Degrees from College of Mathematics, Peking University, and now he is a candidate of Ph.D. in Operations Research and Control Theory, Academy of Mathematics & Systems Science, Chinese Academy of Sciences.
~- B.S., 1996.9 ~ 2000.7, College of Mathematics, Peking University.
~- Ph.D., 2000.9 ~ Now, Academy of Mathematics & System Sciences, CAS .
=== Working Paper ===
~- A SOM Neural Network Model for Protein's Tertiary Structure Prediction
=== Computer Knowledge ===
~- ""Windows 95/98/NT/2000, Unix/Linux, Fortran, Matlab, HTML, LaTeX""

Revision [625]

Edited on 2005-06-29 18:50:07 by ShihuaZhang
Additions:
""<img src="uploads/UserImages/zhongweizhan.jpg" alt="Zhong-Wei Zhan" style="float: left; margin: 1.0%; padding: 0.5%;">""

====== Zhong-Wei Zhan, Ph.D. candidate ======

====== 詹钟炜 博士研究生 ======

Academy of Mathematics & Systems Science, Chinese Academy of Sciences, Beijing 100080, China

''Tel:'' 86-10-82681046
''Email:'' zhanzw@mail.amss.ac.cn

::c::----
Z.-W. Zhan was born on 9th, Aug., 1978 in Beijing. He received his B.S. Degrees from College of Mathematics, Peking University, and now he is a candidate of Ph.D. in Operations Research and Control Theory, Academy of Mathematics & Systems Science, Chinese Academy of Sciences.

=== Educational Background ===
~- B.S., 1996.9 ~ 2000.7, College of Mathematics, Peking University.
~- Ph.D., 2000.9 ~ Now, Academy of Mathematics & System Sciences, CAS .

=== Research Areas and Interests ===
~- Linear and non-linear optimization theory, algorithm and application
~- Bioinformatics
~- Neural networks
~- Logistics and Supply Chain Management

=== Working Paper ===
~- A SOM Neural Network Model for Protein's Tertiary Structure Prediction

=== Computer Knowledge ===
~- ""Windows 95/98/NT/2000, Unix/Linux, Fortran, Matlab, HTML, LaTeX""

=== Awards ===
~- 2002-2003, Fellowship, Chinese Academy of Sciences

=== Hobbies ===
~- History, Pingpong, Football, etc.
Deletions:
he, zhang

Revision [248]

The oldest known version of this page was created on 2005-04-16 12:57:18 by ShihuaZhang
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