===== Publications - Bioinformatics 2015 =====
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=== Books & Chapters ===


=== Accepted Papers ===
~1) Yongcui Wang, Nai-Yang Deng, Shi-Long Chen, and **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**. ---**[[http://http://bioinformatics.oxfordjournals.org/ Computational probing protein-protein interactions targeting small molecules]]**--- //Bioinformatics//. in press, 2015.
~1) **[[http://zhangroup.aporc.org/MengZou Meng Zou]]**, Zhaoqi Liu, **[[http://zhangroup.aporc.org/XiangsunZhang Xiang-Sun Zhang]]**, and **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**. ---**[[http://bioinformatics.oxfordjournals.org/content/early/2015/07/08/bioinformatics.btv374.full NCC-AUC: an AUC optimization method to identify multi-biomarker panel for cancer prognosis from genomic and clinical data]]**--- //Bioinformatics//. in press, 2015.

=== Refereed Journal Papers ===

~1) Evangelos Pefanis*, **[[http://zhangroup.aporc.org/JiguangWang Jiguang Wang*]]**, Gerson Rothschild*, Junghyun Lim*, Kazadi D, Sun J, Federation A, Chao J, Elliott O, Liu ZP, Economides AN, Bradner JE, Rabadan R, Basu U. ---**[[http://www.cell.com/cell/abstract/S0092-8674(15)00490-0 RNA-Exosome-Regulated Long Non-coding RNA Transcription Controls Super-Enhancer Activity.]]**--- //Cell//, Volume 161, Issue 4, p774–789, 7 May 2015. (*First authors)
~1) Rachel D. Melamed, **[[http://zhangroup.aporc.org/JiguangWang Jiguang Wang]]**, Antonio Iavarone and Raul Rabadan. --- [[http://jmcb.oxfordjournals.org/content/7/3/203 An information theoretic method to identify combinations of genomic alterations that promote glioblastoma.]]--- //J Mol Cell Biol//, doi: 10.1093/jmcb/mjv026, 2015.
~1) **[[http://zhangroup.aporc.org/MengZou Meng Zou]]**, Pengjun Zhang, Xin-Yu Wen, Luonan Chen, Yaping Tian, and **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**. ---**[[http://www.sciencedirect.com/science/article/pii/S1046202315002042 A novel mixed integer programming for multi-biomarker panel identification by distinguishing malignant from benign colorectal tumors]]**--- //Methods//. Vol. 83, 3–17, 2015.
~1) **[[http://zhangroup.aporc.org/JinxueXin Jingxue Xin]]**, **[[http://zhangroup.aporc.org/XianwenRen Xianwen Ren]]**, Luonan Chen and **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**. ---**[[http://www.biomedcentral.com/1755-8794/8/S2/S11/abstract Identifying network biomarkers based on protein-protein interactions and expression data]]**--- //BMC Medical Genomics//, 8(Suppl 2):S11， 2015
~1)Ke Li, **Hui-Jia Li**, Hao Wang.---**[[http://www.worldscientific.com/doi/abs/10.1142/S021798491550061X Situation analysis of relationship in social networks based on link entropy]]**---** Modern Physics Letters B**, 2015, 29(13): 1550061.(SCI, IF=0.746)
~1)**Hui-Jia Li**, Hao Wang, L.Chen.---**[[http://iopscience.iop.org/0295-5075/108/6/68009 Measuring robustness of community structure in complex networks]]**--- **Europhysics Letters**, v108, n6, 68009, 2015.
~1)**Hui-Jia Li**, J J.Daniels.---**[[http://journals.aps.org/pre/abstract/10.1103/PhysRevE.91.012801 Social significance of community structure: Statistical view]]**--- **Physical Review E**, v91, n1, 012801, 2015.
~1)**Hui-Jia Li**.---**[[http://content.iospress.com/articles/journal-of-intelligent-and-fuzzy-systems/ifs1974 The comparison of significance of fuzzy community partition across optimization methods]]**--- ** Journal of Intelligent & Fuzzy Systems**, 2015, vol. 29, no. 6, pp. 2707-2715.
~1)**Hui-Jia Li**, Huiying Li.---**[[http://link.springer.com/article/10.1007/s11424-015-4145-6?wt_mc=internal.event.1.SEM.ArticleAuthorOnlineFirst Scalably revealing the dynamics of soft community structure in complex networks]]**--- **Journal of Systems Science and Complexity**, 2015, In Press.


=== Proceedings Papers ===


CategoryPublication