Publications - Bioinformatics 2012
2002-2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 |2015
Books & Chapters
Accepted Papers
Refereed Journal Papers
- Xiang-Sun Zhang, Zhenping Li, Rui-Sheng Wang, and Yong Wang
A combinatorial model and algorithm for globally searching community structure in complex networks
Journal of Combinatorial Optimization, 23(4): 425-442, 2012.
SCI; Funding: NSFC(10631070, 60873205, 10801131, 10701080), CAS(kjcx-yw-s7)
- Hui-Jia Li, Yong Wang, Ling-Yun Wu, Junhua Zhang and Xiang-Sun Zhang
Potts model based on a Markov process computation solves the community structure problem effectively
Physical Review E, 86: 016109, 2012.
SCI; Funding: NSFC(11131009, 60970091, 61171007, 91029301, 61072149, 31100949, 61134013), CAS(kjcx-yw-s7)
- Hui-Jia Li, Yong Wang, Ling-Yun Wu, Zhi-Ping Liu, Luonan Chen and Xiang-Sun Zhang
Community structure detection based on Potts model and network's spectral characterization
Europhysics Letters, 97: 48005, 2012.
SCI; Funding: NSFC(11131009, 60970091, 61171007, 91029301, 61072149, 31100949, 61134013), CAS(kjcx-yw-s7)
- Hui-Jia Li, Junhua Zhang, Zhi-Ping Liu, Luonan Chen and Xiang-Sun Zhang
Identify overlapping communities in social networks using multi-scale local information expansion
European Physical Journal B, 85(6): 190, 2012.
SCI; Funding: NSFC(11131009, 60970091, 61171007, 91029301, 61072149, 31100949, 61134013), CAS(kjcx-yw-s7)
- Zhi-Ping Liu, Yong Wang. Xiang-Sun Zhang, Luonan Chen.
Network-based analysis of complex diseases
IET Systems Biology, 6(1): 122-133, 2012.
- Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen.
Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs.
BMC Bioinformatics, 13(Suppl 7): S6, 2012.
SCI; Funding: NSFC(31100949, 61072149, 91029301)
- Lin Wang, Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen.
Prediction of hot spots in protein interfaces using a random forest model with hybrid features
Protein Engineering Design and Selection, 25(3):119-126, 2012.
SCI; Funding: NSFC(31100949, 60873205, 61134013, 61072149, 91029301)
- Xianwen Ren, Yong Wang, Jiguang Wang and Xiang-Sun Zhang.
A unified computational model for revealing and predicting subtle subtypes of cancers
BMC Bioinformatics 13:70, 2012.
SCI; Funding: NSFC(61171007, 11131009)
- Zhong-Yuan Zhang
Divergence Functions of Nonnegative Matrix Factorization: A Comparison Study.
Communications in Statistics - Simulation and Computation, 40: 1594-1612, 2012.
- Yong Wang, Xiang-Sun Zhang, and Luonan Chen.
Modelling biological systems from molecules to dynamical networks.
BMC Systems Biology, 6(Suppl 1):S1, 2012.
- Chen Chen, Jun-Fei Zhao, Qiang Huang, Rui-Sheng Wang, and Xiang-Sun Zhang.
Inferring domain-domain interactions from protein-protein interactions in the complex network conformation.
BMC Systems Biology, 6(Suppl 1):S7, 2012.
SCI; Funding: NSFC(60873205)
- Yong Wang, Qiao-Feng Wu, Chen Chen, Ling-Yun Wu, Xian-Zhong Yan, Shu-Guang Yu, Xiang-Sun Zhang, and Fan-Rong Liang.
Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection.
BMC Systems Biology, 6(Suppl 1):S15, 2012.
SCI; Funding: NSFC(61171007, 11131009, 60970091), CAS(kjcx-yw-s7)
- Yongcui Wang, Xianwen Ren, Chunhua Zhang, Naiyang Deng, Xiang-Sun Zhang.
Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction
Journal of Theoretical Biology 315(21): 64-70, 2012.
SCI; Funding: NSFC(10801131, 10971223)
Proceedings Papers
- Duren Zhana, Yong Wang, Shigeru Saito, Katsuhisa Horimoto.
Inferring Gene Regulatory Network for Cell Reprogramming.
. Proceedings of The 31th Chinese Control Conference (CCC), pp. 7437-7442, Anhui, 2012.
- Zhi-Ping Liu, Wanwei Zhang, Katsuhisa Horimoto, Luonan Chen.
A Gaussian Graphical Model for Identifying Significantly Responsive Regulatory Networks from Time Series Gene Expression Data.
2012 IEEE International Conference on Systems Biology (ISB), pp. 142-147.
- Xinjian Zhuo.
Analysis of a HBV Infection Model With Non-cytolytic Cure Process.
2012 IEEE International Conference on Systems Biology (ISB), pp. 148-151.
- Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang.
CNetA: Network alignment by combining biological and topological features.
2012 IEEE International Conference on Systems Biology (ISB), pp. 220-225.
- Changhe Fu, Ling Jing, Su Deng, Guangxu Jin.
Identification of Oncogenic Genes for Colon Adenocarcinoma from Genomics Data.
2012 IEEE International Conference on Systems Biology (ISB), pp. 263-266.
- Junhua Zhang, Shihua Zhang, Yong Wang, Junfei Zhao, Xiang-Sun Zhang.
Identifying Mutated Core Modules in Glioblastoma by Integrative Network Analysis.
2012 IEEE International Conference on Systems Biology (ISB), pp. 304-309.
- Xinxin Wang, Zhana Duren, Chao Zhang, Lin Chen, Yong Wang.
Clinical Data Analysis Reveals Three Subytpes of Gastric Cancer.
2012 IEEE International Conference on Systems Biology (ISB), pp. 315-320.
- Hui-Jia Li, Zhi-Ping Liu, Luonan Chen and Xiang-Sun Zhang
Identification of overlapping communities in protein interaction networks using multi-scale local information expansion.
2012 10th World Congress on Intelligent Control and Automation (WCICA), pp. 5071-5076
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