Revision history for PubBioinformatics2010


Revision [7235]

Last edited on 2014-10-09 19:21:54 by ZhipingLiu

No Differences

Revision [5178]

Edited on 2011-03-07 16:49:08 by LingyunWu
Additions:
~1) Yan Xu, Xiao-Bo Wang, Jun Ding, Ling-Yun Wu, and Naiyang Deng. ---**[[http://www.ncbi.nlm.nih.gov/pubmed/20085770 Lysine acetylation sites prediction using an ensemble of support vector machine classifiers]]**--- //Journal of Theoretical Biology//, 264(1):130-135, 2010.--- SCI;
~1) Yongcui Wang, Zhixia Yang, Yong Wang, and Nai-Yang Deng. ---**[[http://www.ingentaconnect.com/content/ben/lddd/2010/00000007/00000005/011aj Computationally probing drug-protein interactions via support vector machine]]**--- //Letters In Drug Design & Discovery//, 7(5), 370-378, 2010.--- SCI;
~1) Zhong-Yuan Zhang, Tao Li, Chris Ding, Xian-Wen Ren, and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/y62142r517762595/fulltext.pdf Binary matrix factorization for analyzing gene expression data]]**--- // Data Mining and Knowledge Discovery//, 20(1), 28-52, 2010.--- SCI;
Deletions:
~1) Yan Xu, Xiao-Bo Wang, Jun Ding, Ling-Yun Wu, and Naiyang Deng. ---**[[http://www.ncbi.nlm.nih.gov/pubmed/20085770 Lysine acetylation sites prediction using an ensemble of support vector machine classifiers]]**--- //Journal of Theoretical Biology//, 264(1):130-135, 2010.
~1) Yongcui Wang, Zhixia Yang, Yong Wang, and Nai-Yang Deng. ---**[[http://www.ingentaconnect.com/content/ben/lddd/2010/00000007/00000005/011aj Computationally probing drug-protein interactions via support vector machine]]**--- //Letters In Drug Design & Discovery//, 7(5), 370-378, 2010.
~1) Zhong-Yuan Zhang, Tao Li, Chris Ding, Xian-Wen Ren, and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/y62142r517762595/fulltext.pdf Binary matrix factorization for analyzing gene expression data]]**--- // Data Mining and Knowledge Discovery//, 20(1), 28-52, 2010.

Revision [5130]

Edited on 2011-02-15 22:51:13 by LingyunWu
Deletions:
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470505192.html Computational Models for Condition-Specific Gene and Pathway Inference]]**--- Chapter 30 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, January, 2011.
~1) Ling-Yun Wu. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470505192.html Haplotype Inference Models and Algorithms]]**--- Chapter 36 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, January, 2011.
=== Accepted Papers ===
~1) Xiang-Sun Zhang, Zhenping Li, Ruisheng Wang, and Yong Wang ---**[[http://www.springerlink.com/content/v531g352776u1011/ A combinatorial model and algorithm for globally searching community structure in complex networks]]**--- //Journal of Combinatorial Optimization//, in press, 2010.

Revision [4959]

Edited on 2010-11-22 12:12:59 by RuishengWang
Additions:
~1) Xianwen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F53.pdf An Optimization Model for Fuzzy Binary Clustering]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 422-432
~1) Junhua Zhang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F60.pdf On Resolution Limit of the Modularity in Community Detection]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 492-499

Revision [4957]

Edited on 2010-11-22 12:07:36 by RuishengWang

No Differences

Revision [4954]

Edited on 2010-11-22 12:04:51 by RuishengWang
Deletions:
~1) Zhenping Li, Rui-Sheng Wang, Hong-Wei Liu, Wenfeng Zhou.---**[[http://www.aporc.org/LNOR/12/ISORA2010F12.pdf Models and Algorithms for the Constrained Orienteering Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 89-97
~1) Hong-Wei Liu.---**[[http://www.aporc.org/LNOR/12/ISORA2010F33.pdf Global Convergence of the Non-Quasi-Newton Method with Non-Monotone Line Search for Unconstrained Optimization Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 270-279
~1) Zhong-Yuan Zhang, Jie Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F39.pdf Survey on the Variations and Applications of Nonnegative Matrix Factorization]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 317-323
~1) Zhenping Li, Qingyun Xu, Na Li, Yuanyuan Ma.---**[[http://www.aporc.org/LNOR/12/ISORA2010F52.pdf Mathematical Model and Solving Method Based on Software for the Shortest Time Limited Transportation Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 414-421
~1) Xianwen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F53.pdf An Optimization Model for Fuzzy Binary Clustering]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 422-432
~1) Junhua Zhang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F60.pdf On Resolution Limit of the Modularity in Community Detection]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 492-499
~1) Ji-Bin Qu, Ling-Yun Wu, Xiaoping Liao, Yushu Xie, Bingxue Song, Guiying Yan.---**[[http://www.aporc.org/LNOR/12/ISORA2010F63.pdf DEA with Weight Constraints for Evaluation of Work Safety Supervision]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 519-525

Revision [4953]

Edited on 2010-11-17 05:27:02 by RuishengWang
Additions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.springerlink.com/content/n5330464821r2360/ Self-organizing map of complex networks for community detection]]**---//Journal of Systems Science and Complexity//, 23(5), 931-941, 2010. --- SCI; Funding: NSFC(10631070, 60873205, 10701080), BNSFC(1092011)
~1) Junhua Zhang, Yuqing Qiu, Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/33188l5260668780/ Detecting community structure: From parsimony to weighted parsimony]]**---//Journal of Systems Science and Complexity//, 23(5), 1024-1036, 2010. --- SCI; Funding: NSFC(60873205),CAS(kjcx-yw-s7)
Deletions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.springerlink.com/content/n5330464821r2360/ Self-organizing map of complex networks for community detection]]**---//Journal of Systems Science and Complexity//, 23(5), 931-941, 2010. --- SCI; Funding: NSFC(10631070, 60873205, 10701080)

Revision [4952]

Edited on 2010-11-17 05:22:37 by RuishengWang
Additions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.springerlink.com/content/n5330464821r2360/ Self-organizing map of complex networks for community detection]]**---//Journal of Systems Science and Complexity//, 23(5), 931-941, 2010. --- SCI; Funding: NSFC(10631070, 60873205, 10701080)
~1) Xianwen Ren, Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**---//Journal of Systems Science and Complexity//, 23(5), 971-977, 2010. --- SCI; Funding: NSFC(10631070, 60873205)
Deletions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.springerlink.com/content/n5330464821r2360/ Self-organizing map of complex networks for community detection]]**---//Journal of Systems Science and Complexity//, 23(5), 931-941, 2010. .--- SCI; Funding: NSFC(10631070, 60873205, 10701080)
~1) Xianwen Ren, Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**---//Journal of Systems Science and Complexity//, 23(5), 971-977, 2010. .--- SCI; Funding: NSFC(10631070, 60873205)

Revision [4951]

Edited on 2010-11-17 05:22:12 by RuishengWang
Additions:
~1) Xianwen Ren, Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**---//Journal of Systems Science and Complexity//, 23(5), 971-977, 2010. .--- SCI; Funding: NSFC(10631070, 60873205)

Revision [4950]

Edited on 2010-11-17 05:20:20 by RuishengWang
Additions:
=== Proceedings Papers ===
Deletions:
**=== Proceedings Papers ===

Revision [4949]

Edited on 2010-11-17 05:19:16 by RuishengWang
Additions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.springerlink.com/content/n5330464821r2360/ Self-organizing map of complex networks for community detection]]**---//Journal of Systems Science and Complexity//, 23(5), 931-941, 2010. .--- SCI; Funding: NSFC(10631070, 60873205, 10701080)
Deletions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.springerlink.com/content/n5330464821r2360/ Self-organizing map of complex networks for community detection]]---Journal of Systems Science and Complexity, 23(5), 931-941, 2010. .--- SCI; Funding: NSFC(10631070, 60873205, 10701080)

Revision [4948]

Edited on 2010-11-17 05:18:38 by RuishengWang
Additions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.springerlink.com/content/n5330464821r2360/ Self-organizing map of complex networks for community detection]]---Journal of Systems Science and Complexity, 23(5), 931-941, 2010. .--- SCI; Funding: NSFC(10631070, 60873205, 10701080)
**=== Proceedings Papers ===
Deletions:
=== Proceedings Papers ===

Revision [4933]

Edited on 2010-10-25 07:54:38 by RuishengWang

No Differences

Revision [4932]

Edited on 2010-10-25 07:54:18 by RuishengWang

No Differences

Revision [4931]

Edited on 2010-10-25 07:53:46 by RuishengWang
Additions:
~1) Yong Wang, Eric Franzosa, Xiang-Sun Zhang, and Yu Xia. ---**[[http://nar.oxfordjournals.org/content/38/18/5959 Protein evolution in yeast transcription factor subnetworks]]**--- //Nucleic Acids Research//, 38(18): 5959–5969, 2010. ---SCI; Funding: NSFC(10801131, 10631070)
Deletions:
=== Working Papers ===
~1) ~1) Yong Wang, Eric Franzosa, Xiang-Sun Zhang, and Yu Xia. ---**[[http://nar.oxfordjournals.org/content/38/18/5959 Protein evolution in yeast transcription factor subnetworks]]**--- //Nucleic Acids Research//, 38(18): 5959–5969, 2010. ---SCI; Funding: NSFC(10801131, 10631070)

Revision [4930]

Edited on 2010-10-25 07:53:11 by RuishengWang
Additions:
~1) Yan Xu, Xiao-Bo Wang, Jun Ding, Ling-Yun Wu, and Naiyang Deng. ---**[[http://www.ncbi.nlm.nih.gov/pubmed/20085770 Lysine acetylation sites prediction using an ensemble of support vector machine classifiers]]**--- //Journal of Theoretical Biology//, 264(1):130-135, 2010.
~1) ~1) Yong Wang, Eric Franzosa, Xiang-Sun Zhang, and Yu Xia. ---**[[http://nar.oxfordjournals.org/content/38/18/5959 Protein evolution in yeast transcription factor subnetworks]]**--- //Nucleic Acids Research//, 38(18): 5959–5969, 2010. ---SCI; Funding: NSFC(10801131, 10631070)
Deletions:
~1) Yan Xu, Xiao-Bo Wang, Jun Ding, Ling-Yun Wu, and Naiyang Deng. ---**Lysine acetylation sites prediction using an ensemble of support vector machine classifiers**--- //Journal of Theoretical Biology//, in press, 2010.
~1) Yong Wang, Eric Franzosa, Xiang-Sun Zhang, and Yu Xia. ---**[[http://nar.oxfordjournals.org/content/38/18/5959 Protein evolution in yeast transcription factor subnetworks]]**--- //Nucleic Acids Research//, 38(18): 5959–5969, 2010. ---SCI; Funding: NSFC(10801131, 10631070)

Revision [4929]

Edited on 2010-10-24 23:45:05 by RuishengWang
Additions:
~1) Xiang-Sun Zhang, Zhenping Li, Ruisheng Wang, and Yong Wang ---**[[http://www.springerlink.com/content/v531g352776u1011/ A combinatorial model and algorithm for globally searching community structure in complex networks]]**--- //Journal of Combinatorial Optimization//, in press, 2010.
Deletions:
~1) Xiang-Sun Zhang, Zhenping Li, Ruisheng Wang, and Yong Wang ---**[[http://www.springer.com/mathematics/numbers/journal/10878 A combinatorial model and algorithm for globally searching community structure in complex networks]]**--- //Journal of Combinatorial Optimization//, in press, 2010.

Revision [4924]

Edited on 2010-10-21 17:46:27 by ZhipingLiu
Additions:
~1) Yong Wang, Eric Franzosa, Xiang-Sun Zhang, and Yu Xia. ---**[[http://nar.oxfordjournals.org/content/38/18/5959 Protein evolution in yeast transcription factor subnetworks]]**--- //Nucleic Acids Research//, 38(18): 5959–5969, 2010. ---SCI; Funding: NSFC(10801131, 10631070)
Deletions:
~1) Yong Wang, Eric Franzosa, Xiang-Sun Zhang, and Yu Xia. ---**[[http://nar.oxfordjournals.org/cgi/content/full/gkq353 Protein evolution in yeast transcription factor subnetworks]]**--- //Nucleic Acids Research//, 38(18): 5959–5969, 2010. ---SCI; Funding: NSFC(10801131, 10631070)

Revision [4923]

Edited on 2010-10-21 17:44:56 by ZhipingLiu
Additions:
~1) Yong Wang, Eric Franzosa, Xiang-Sun Zhang, and Yu Xia. ---**[[http://nar.oxfordjournals.org/cgi/content/full/gkq353 Protein evolution in yeast transcription factor subnetworks]]**--- //Nucleic Acids Research//, 38(18): 5959–5969, 2010. ---SCI; Funding: NSFC(10801131, 10631070)
Deletions:
~1) Yong Wang, Eric Franzosa, Xiang-Sun Zhang, and Yu Xia. ---**[[http://nar.oxfordjournals.org/cgi/content/full/gkq353 Protein evolution in yeast transcription factor subnetworks]]**--- //Nucleic Acids Research//, in press, 2010.

Revision [4904]

Edited on 2010-09-27 11:05:21 by RuishengWang
Additions:
~1) Yong Wang, Xiang-Sun Zhang, Katsuhisa Horimoto, and Luonan Chen. ---**[[http://ieeexplore.ieee.org/Xplore/login.jsp?url=http%3A%2F%2Fieeexplore.ieee.org%2Fstamp%2Fstamp.jsp%3Ftp%3D%26arnumber%3D5573108&authDecision=-203 System Identification Models for Gene Regulation System. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6239-6244, Beijing, 2010.--- EI; Funding: NSFC(10801131)
Deletions:
~1) Yong Wang, Xiang-Sun Zhang, Katsuhisa Horimoto, and Luonan Chen. ---**[[http://ccc10.bit.edu.cn/ System Identification Models for Gene Regulation System. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6239-6244, Beijing, 2010.--- EI; Funding: NSFC(10801131)

Revision [4903]

Edited on 2010-09-27 11:03:04 by RuishengWang
Additions:
~1) Ruisheng Wang, Zhenping Li, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://ieeexplore.ieee.org/Xplore/login.jsp?url=http%3A%2F%2Fieeexplore.ieee.org%2Fstamp%2Fstamp.jsp%3Ftp%3D%26arnumber%3D5573015&authDecision=-203 Optimization and Control of Metabolic Networks. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6251-6255, Beijing, 2010.--- EI; Funding: NSFC(10631070,10701080,60873205)
Deletions:
~1) Ruisheng Wang, Zhenping Li, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://ieeexplore.ieee.org/search/freesrchabstract.jsp?tp=&arnumber=5573015&queryText%3DOptimization+and+Control+of+Metabolic+Networks.%26openedRefinements%3D*%26searchField%3DSearch+All Optimization and Control of Metabolic Networks. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6251-6255, Beijing, 2010.--- EI; Funding: NSFC(10631070,10701080,60873205)

Revision [4902]

Edited on 2010-09-27 11:01:44 by RuishengWang
Additions:
~1) Ruisheng Wang, Zhenping Li, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://ieeexplore.ieee.org/search/freesrchabstract.jsp?tp=&arnumber=5573015&queryText%3DOptimization+and+Control+of+Metabolic+Networks.%26openedRefinements%3D*%26searchField%3DSearch+All Optimization and Control of Metabolic Networks. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6251-6255, Beijing, 2010.--- EI; Funding: NSFC(10631070,10701080,60873205)
Deletions:
~1) Ruisheng Wang, Zhenping Li, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://ccc10.bit.edu.cn/ Optimization and Control of Metabolic Networks. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6251-6255, Beijing, 2010.--- EI; Funding: NSFC(10631070,10701080,60873205)

Revision [4901]

Edited on 2010-09-27 04:24:02 by RuishengWang
Additions:
~1) Ruisheng Wang, Zhenping Li, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://ccc10.bit.edu.cn/ Optimization and Control of Metabolic Networks. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6251-6255, Beijing, 2010.--- EI; Funding: NSFC(10631070,10701080,60873205)
Deletions:
~1) Ruisheng Wang, Zhenping Li, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://ccc10.bit.edu.cn/ Optimization and Control of Metabolic Networks. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6261-6266, Beijing, 2010.--- EI; Funding: NSFC(10631070)

Revision [4900]

Edited on 2010-09-25 17:44:41 by LingyunWu
Additions:
~1) Ling-Yun Wu, Xiaobo Zhou, and Stephen T. C. Wong. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470180935.html Computational Imaging and Modeling for System Biology]]**--- Chapter 17 in //Elements of Computational Systems Biology//, Huma M. Lodhi and Stephen H. Muggleton (Editors). John Wiley & Sons, February, 2010.
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470505192.html Computational Models for Condition-Specific Gene and Pathway Inference]]**--- Chapter 30 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, January, 2011.
~1) Ling-Yun Wu. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470505192.html Haplotype Inference Models and Algorithms]]**--- Chapter 36 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, January, 2011.
Deletions:
~1) Ling-Yun Wu, Xiaobo Zhou, and Stephen T. C. Wong. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470180935,subjectCd-MA23,descCd-tableOfContents.html Computational Imaging and Modeling for System Biology]]**--- Chapter 17 in //Elements of Computational Systems Biology//, Huma M. Lodhi and Stephen H. Muggleton (Editors). John Wiley & Sons, February, 2010.
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Computational Models for Condition-Specific Gene and Pathway Inference]]**--- Chapter 30 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, 2010.
~1) Ling-Yun Wu. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Haplotype Inference Models and Algorithms]]**--- Chapter 36 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, 2010.

Revision [4899]

Edited on 2010-09-25 17:41:19 by LingyunWu
Additions:
~1) Ling-Yun Wu, Xiaobo Zhou, and Stephen T. C. Wong. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470180935,subjectCd-MA23,descCd-tableOfContents.html Computational Imaging and Modeling for System Biology]]**--- Chapter 17 in //Elements of Computational Systems Biology//, Huma M. Lodhi and Stephen H. Muggleton (Editors). John Wiley & Sons, February, 2010.
Deletions:
~1) Ling-Yun Wu, Xiaobo Zhou, and Stephen T. C. Wong. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470180935,subjectCd-MA23,descCd-tableOfContents.html Computational Imaging and Modeling for System Biology]]**--- Chapter 17 in //Elements of Computational Systems Biology//, Huma M. Lodhi and Stephen H. Muggleton (Editors). John Wiley & Sons, January, 2010.

Revision [4898]

Edited on 2010-09-25 17:40:51 by LingyunWu
Additions:
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Computational Models for Condition-Specific Gene and Pathway Inference]]**--- Chapter 30 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, 2010.
~1) Ling-Yun Wu. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Haplotype Inference Models and Algorithms]]**--- Chapter 36 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, 2010.
Deletions:
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Computational Models for Condition-Specific Gene and Pathway Inference]]**--- Chapter 30 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.
~1) Ling-Yun Wu. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Haplotype Inference Models and Algorithms]]**--- Chapter 36 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.

Revision [4897]

Edited on 2010-09-25 17:40:31 by LingyunWu
Additions:
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Computational Models for Condition-Specific Gene and Pathway Inference]]**--- Chapter 30 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.
~1) Ling-Yun Wu. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Haplotype Inference Models and Algorithms]]**--- Chapter 36 in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.
Deletions:
~1) Ling-Yun Wu. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Haplotype Inference Models and Algorithms]]**--- Chapter in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Computational Models for Condition-Specific Gene and Pathway Inference]]**--- Chapter in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.

Revision [4896]

Edited on 2010-09-25 17:38:45 by LingyunWu
Additions:
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Computational Models for Condition-Specific Gene and Pathway Inference]]**--- Chapter in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.

Revision [4890]

Edited on 2010-09-21 09:49:48 by YongWang
Additions:
~1) Xiang-Sun Zhang, Zhenping Li, Ruisheng Wang, and Yong Wang ---**[[http://www.springer.com/mathematics/numbers/journal/10878 A combinatorial model and algorithm for globally searching community structure in complex networks]]**--- //Journal of Combinatorial Optimization//, in press, 2010.

Revision [4888]

Edited on 2010-09-18 18:39:42 by ChenChen
Additions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/13/ISB2010F42.pdf Drug Target Identification Based on Flux Balance Analysis of Metabolic Networks]].**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 331–338
~1) Yu-Qing Qiu, Xing-Ming Zhao, Zikai Wu, Chaochao Wu, Rong Zeng, Luonan Chen.---**[[http://www.aporc.org/LNOR/13/ISB2010F45.pdf Network Flow Model Based Analysis of Mouse Hepatocarcinogenesis]]**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 355–362
~1) Zhenping Li, Rui-Sheng Wang, Hong-Wei Liu, Wenfeng Zhou.---**[[http://www.aporc.org/LNOR/12/ISORA2010F12.pdf Models and Algorithms for the Constrained Orienteering Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 89-97
~1) Hong-Wei Liu.---**[[http://www.aporc.org/LNOR/12/ISORA2010F33.pdf Global Convergence of the Non-Quasi-Newton Method with Non-Monotone Line Search for Unconstrained Optimization Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 270-279
~1) Zhong-Yuan Zhang, Jie Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F39.pdf Survey on the Variations and Applications of Nonnegative Matrix Factorization]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 317-323
~1) Zhenping Li, Qingyun Xu, Na Li, Yuanyuan Ma.---**[[http://www.aporc.org/LNOR/12/ISORA2010F52.pdf Mathematical Model and Solving Method Based on Software for the Shortest Time Limited Transportation Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 414-421
~1) Xianwen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F53.pdf An Optimization Model for Fuzzy Binary Clustering]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 422-432
~1) Junhua Zhang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F60.pdf On Resolution Limit of the Modularity in Community Detection]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 492-499
~1) Ji-Bin Qu, Ling-Yun Wu, Xiaoping Liao, Yushu Xie, Bingxue Song, Guiying Yan.---**[[http://www.aporc.org/LNOR/12/ISORA2010F63.pdf DEA with Weight Constraints for Evaluation of Work Safety Supervision]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 519-525
Deletions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/13/ISB2010F42.pdf Drug Target Identification Based on Flux Balance Analysis of Metabolic Networks]].**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 331–338
~1) Yu-Qing Qiu, Xing-Ming Zhao, Zikai Wu, Chaochao Wu, Rong Zeng, Luonan Chen.---**[[http://www.aporc.org/LNOR/13/ISB2010F45.pdf Network Flow Model Based Analysis of Mouse Hepatocarcinogenesis]]**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 355–362
~1) Zhenping Li, Rui-Sheng Wang, Hong-Wei Liu, Wenfeng Zhou.---**[[http://www.aporc.org/LNOR/12/ISORA2010F12.pdf Models and Algorithms for the Constrained Orienteering Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 89-97
~1) Hong-Wei Liu.---**[[http://www.aporc.org/LNOR/12/ISORA2010F33.pdf Global Convergence of the Non-Quasi-Newton Method with Non-Monotone Line Search for Unconstrained Optimization Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 270-279
~1) Zhong-Yuan Zhang, Jie Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F39.pdf Survey on the Variations and Applications of Nonnegative Matrix Factorization]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 317-323
~1) Zhenping Li, Qingyun Xu, Na Li, Yuanyuan Ma.---**[[http://www.aporc.org/LNOR/12/ISORA2010F52.pdf Mathematical Model and Solving Method Based on Software for the Shortest Time Limited Transportation Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 414-421
~1) Xianwen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F53.pdf An Optimization Model for Fuzzy Binary Clustering]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 422-432
~1) Junhua Zhang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F60.pdf On Resolution Limit of the Modularity in Community Detection]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 492-499

Revision [4887]

Edited on 2010-09-18 18:37:29 by ChenChen
Additions:
~1) Junhua Zhang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F60.pdf On Resolution Limit of the Modularity in Community Detection]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 492-499

Revision [4886]

Edited on 2010-09-18 18:35:47 by ChenChen
Additions:
~1) Xianwen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F53.pdf An Optimization Model for Fuzzy Binary Clustering]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 422-432

Revision [4885]

Edited on 2010-09-18 18:34:21 by ChenChen
Additions:
~1) Zhenping Li, Qingyun Xu, Na Li, Yuanyuan Ma.---**[[http://www.aporc.org/LNOR/12/ISORA2010F52.pdf Mathematical Model and Solving Method Based on Software for the Shortest Time Limited Transportation Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 414-421

Revision [4884]

Edited on 2010-09-18 18:32:30 by ChenChen
Additions:
~1) Zhong-Yuan Zhang, Jie Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F39.pdf Survey on the Variations and Applications of Nonnegative Matrix Factorization]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 317-323

Revision [4883]

Edited on 2010-09-18 18:30:22 by ChenChen
Additions:
~1) Hong-Wei Liu.---**[[http://www.aporc.org/LNOR/12/ISORA2010F33.pdf Global Convergence of the Non-Quasi-Newton Method with Non-Monotone Line Search for Unconstrained Optimization Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 270-279

Revision [4882]

Edited on 2010-09-18 18:27:37 by ChenChen
Additions:
~1) Zhenping Li, Rui-Sheng Wang, Hong-Wei Liu, Wenfeng Zhou.---**[[http://www.aporc.org/LNOR/12/ISORA2010F12.pdf Models and Algorithms for the Constrained Orienteering Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 89-97
Deletions:
~1) Zhenping Li, Rui-Sheng Wang, Hong-Wei Liu, Wenfeng Zhou.---**[[Models and Algorithms for the Constrained Orienteering Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 89-97

Revision [4881]

Edited on 2010-09-18 18:27:10 by ChenChen
Additions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/13/ISB2010F42.pdf Drug Target Identification Based on Flux Balance Analysis of Metabolic Networks]].**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 331–338
~1) Zhenping Li, Rui-Sheng Wang, Hong-Wei Liu, Wenfeng Zhou.---**[[Models and Algorithms for the Constrained Orienteering Problem]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 89-97
Deletions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/13/ISB2010F42.pdf Drug Target Identification Based on Flux Balance Analysis of Metabolic Networks]]**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 331–338

Revision [4880]

Edited on 2010-09-18 18:24:05 by ChenChen
Additions:
~1) Yu-Qing Qiu, Xing-Ming Zhao, Zikai Wu, Chaochao Wu, Rong Zeng, Luonan Chen.---**[[http://www.aporc.org/LNOR/13/ISB2010F45.pdf Network Flow Model Based Analysis of Mouse Hepatocarcinogenesis]]**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 355–362

Revision [4879]

Edited on 2010-09-18 18:22:11 by ChenChen
Additions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/13/ISB2010F42.pdf Drug Target Identification Based on Flux Balance Analysis of Metabolic Networks]]**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 331–338

Revision [4878]

Edited on 2010-09-18 18:20:22 by ChenChen
Additions:
~1) Jibin Qu, Michael Ng, Luonan Chen. ---**[[http://www.aporc.org/LNOR/13/ISB2010F41.pdf Constrained Subspace Clustering for Time Series Gene Expression Data]].**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 323–330

Revision [4877]

Edited on 2010-09-18 18:18:01 by ChenChen
Additions:
~1) Jiguang Wang, Yong Wang, Xianwen Ren, Wei Guo, Luonan Chen. ---**[[http://www.aporc.org/LNOR/13/ISB2010F31.pdf Uncover the Transient Transcriptional Regulations by a Novel Sliding Window Correlation Strategy]].**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 235–242
Deletions:
~1) Jiguang Wang, Yong Wang, Xianwen Ren, Wei Guo, Luonan Chen. ---*[[http://www.aporc.org/LNOR/13/ISB2010F31.pdf Uncover the Transient Transcriptional Regulations by a Novel Sliding Window Correlation Strategy]].**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 235–242

Revision [4876]

Edited on 2010-09-18 18:17:39 by ChenChen
Additions:
~1) Jiguang Wang, Yong Wang, Xianwen Ren, Wei Guo, Luonan Chen. ---*[[http://www.aporc.org/LNOR/13/ISB2010F31.pdf Uncover the Transient Transcriptional Regulations by a Novel Sliding Window Correlation Strategy]].**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 235–242

Revision [4875]

Edited on 2010-09-18 18:14:08 by ChenChen
Additions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang. ---**[[http://www.aporc.org/LNOR/13/ISB2010F26.pdf Effects of Multiple Probesets in Affymetrix GeneChips on Identifying Differentially Expressed Genes in iPS Cells]].**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 187–195

Revision [4874]

Edited on 2010-09-18 18:10:37 by ChenChen
Additions:
~1) Xiaorong Yang, Xianwen Ren, Xiaobo Zhou. ---**[[http://www.aporc.org/LNOR/13/ISB2010F17.pdf Transcriptional Regulatory Network Discovery via Information Mining Approach in Rett Syndromes Study]].**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 109-118
Deletions:
~1) Xiaorong Yang, Xianwen Ren, Xiaobo Zhou. ---**[[http://www.aporc.org/LNOR/13/ISB2010F17.pdf Transcriptional Regulatory Network Discovery via Information Mining Approach in Rett Syndromes Study]],**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 109-118

Revision [4873]

Edited on 2010-09-18 18:10:12 by ChenChen
Additions:
~1) Xiaorong Yang, Xianwen Ren, Xiaobo Zhou. ---**[[http://www.aporc.org/LNOR/13/ISB2010F17.pdf Transcriptional Regulatory Network Discovery via Information Mining Approach in Rett Syndromes Study]],**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 109-118
Deletions:
~1) Xiaorong Yang, Xianwen Ren, Xiaobo Zhou. ---**[[http://www.aporc.org/LNOR/13/ISB2010F17]]**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 109-118

Revision [4872]

Edited on 2010-09-18 18:05:39 by ChenChen
Additions:
~1) Xiaorong Yang, Xianwen Ren, Xiaobo Zhou. ---**[[http://www.aporc.org/LNOR/13/ISB2010F17]]**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 109-118
Deletions:
~1) Xiaorong Yang, Xianwen Ren, Xiaobo Zhou. ---**[[http://www.aporc.org/LNOR/13/ISB2010F17.pdf]]**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 109-118

Revision [4871]

Edited on 2010-09-18 18:05:09 by ChenChen
Additions:
~1) Xiaorong Yang, Xianwen Ren, Xiaobo Zhou. ---**[[http://www.aporc.org/LNOR/13/ISB2010F17.pdf]]**---The Fourth International Conference on Computational Systems Biology (ISB2010), pp. 109-118

Revision [4870]

Edited on 2010-09-17 17:42:09 by ChenChen

No Differences

Revision [4869]

Edited on 2010-09-17 16:58:34 by YongWang
Additions:
~1) Yong Wang, Xiang-Sun Zhang, Katsuhisa Horimoto, and Luonan Chen. ---**[[http://ccc10.bit.edu.cn/ System Identification Models for Gene Regulation System. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6239-6244, Beijing, 2010.--- EI; Funding: NSFC(10801131)
~1) Ruisheng Wang, Zhenping Li, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://ccc10.bit.edu.cn/ Optimization and Control of Metabolic Networks. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6261-6266, Beijing, 2010.--- EI; Funding: NSFC(10631070)
Deletions:
~1) Yong Wang, Xiang-Sun Zhang, Katsuhisa Horimoto, and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf System Identification Models for Gene Regulation System. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6239-6244, Beijing, 2010.--- EI; Funding: NSFC(10801131)

Revision [4868]

Edited on 2010-09-17 16:54:11 by YongWang
Additions:
~1) Yong Wang, Xiang-Sun Zhang, Katsuhisa Horimoto, and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf System Identification Models for Gene Regulation System. ]]**--- Proceedings of The 29th Chinese Control Conference (CCC), pp. 6239-6244, Beijing, 2010.--- EI; Funding: NSFC(10801131)

Revision [4859]

Edited on 2010-09-14 10:11:37 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1752-0509/4/S2/S11/ Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains]]**--- //BMC Systems Biology//, 4(Suppl 2):S11.---SCI; Funding: NSFC(10631070, 60873205), 973(2006CB503905)
Deletions:
~1) Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1752-0509/4/S2/S11/abstract Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains]]**--- //BMC Systems Biology//, 4(Suppl 2):S11.---SCI; Funding: NSFC(10631070, 60873205), 973(2006CB503905)

Revision [4816]

Edited on 2010-09-02 10:31:51 by YongWang
Additions:
~1) Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.biomedcentral.com/qc/1752-0509/4/S2/S1 Optimization Meets Systems Biology.]]**--- //BMC Systems Biology//, Vol. 4, Suppl 2, S1, 2010.--- SCI;
~1) Tingting Gao, Zhixia Yang, Yong Wang, Ling Jing. ---**[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WMD-4XGBG64-1&_user=1999482&_coverDate=02%2F21%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=ed86676e176a49bb8aa4e34c74836a87&searchtype=a Identifying translation initiation sites in prokaryotes using support vector machine.]]**--- //Journal of Theoretical Biology//, Vol. 262, No. 4, 644-649, 2010.--- SCI; Funding: NSFC(10631070, 10801131)
~1) Lin Wang, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.springerlink.com/content/85083565w7877872/ SANA: an algorithm for sequential and non-sequential protein structure alignment]]**--- //Amino Acids//, Vol. 39, No. 2, 417-425, 2010. --- SCI; Funding: NSFC(10631070, 60503004), JSPS-NSFC (10711140116).
Deletions:
~1) Lin Wang, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**SANA: an algorithm for sequential and non-sequential protein structure alignment**--- //Amino Acids//, in press, 2010.

Revision [4805]

Edited on 2010-09-01 11:58:40 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/13/1616 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.--- SCI; Funding: NSFC(10631070, 60873205), 973(2006CB503905)
Deletions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.--- SCI; Funding: NSFC(10631070, 60873205), 973(2006CB503905)

Revision [4804]

Edited on 2010-09-01 11:53:56 by ZhipingLiu

No Differences

Revision [4803]

Edited on 2010-09-01 11:53:00 by ZhipingLiu

No Differences

Revision [4802]

Edited on 2010-09-01 11:52:11 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1752-0509/4/S2/S11/abstract Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains]]**--- //BMC Systems Biology//, 4(Suppl 2):S11.---SCI; Funding: NSFC(10631070, 60873205), 973(2006CB503905)

Revision [4801]

Edited on 2010-09-01 11:45:15 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.--- SCI; Funding: NSFC(10631070, 60873205), 973(2006CB503905)
Deletions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.--- SCI; Funding: NSFC(10631070), 973(2006CB503905)

Revision [4798]

Edited on 2010-08-27 14:32:23 by LingyunWu
Additions:
~1) Zheng Xia, Ling-Yun Wu, Xiaobo Zhou, and Stephen TC Wong. ---**[[http://www.biomedcentral.com/qc/1752-0509/4/S2/S6 Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces.]]**--- //BMC Systems Biology//, Vol. 4, Suppl 2, S6, 2010.--- SCI;

Revision [4796]

Edited on 2010-08-25 09:37:02 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- Proceedings of the 9th International Conference on Machine Learning and Cybernetics. pp. 3067-3072, Qingdao, China, 2010.--- EI; Funding: 973(2006CB503905), NSFC(10631070, 10801131)
Deletions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- Proceedings of the 9th International Conference on Machine Learning and Cybernetics. pp. 3067-3072, Qingdao, China, 2010.

Revision [4791]

Edited on 2010-08-24 10:28:40 by LingyunWu
Additions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.--- SCI; Funding: NSFC(10631070), 973(2006CB503905)
Deletions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.

Revision [4790]

Edited on 2010-08-24 10:27:20 by LingyunWu
Additions:
~1) Xianwen Ren, Xiaobo Zhou, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.--- SCI; Funding: NSFC(60873205), 973(2006CB503905)
Deletions:
~1) Xianwen Ren, Xiaobo Zhou, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.

Revision [4789]

Edited on 2010-08-24 10:25:40 by LingyunWu
Additions:
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Detecting disease associated modules and prioritizing active genes based on high throughput data. ]]**--- //BMC Bioinformatics.// 11:26, 2010.--- SCI; Funding: 973(2006CB503905), NSFC(60873205, 10801131), CAS(kjcx-yw-s7)
Deletions:
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Detecting disease associated modules and prioritizing active genes based on high throughput data. ]]**--- //BMC Bioinformatics.// 11:26, 2010.

Revision [4786]

Edited on 2010-07-30 09:29:28 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- Proceedings of the 9th International Conference on Machine Learning and Cybernetics. pp. 3067-3072, Qingdao, China, 2010.
Deletions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- //Proceedings of the 9th International Conference on Machine Learning and Cybernetics.// pp. 3067-3072, Qingdao, China, 2010.

Revision [4785]

Edited on 2010-07-30 09:28:32 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- //Proceedings of the 9th International Conference on Machine Learning and Cybernetics.// pp. 3067-3072, Qingdao, China, 2010.
Deletions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- //Proceedings of the 9th international conference on machine learning and cybernetics.// pp. 3067-3072 Qingdao, 11-14 July, 2010.

Revision [4784]

Edited on 2010-07-30 09:24:45 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- //Proceedings of the 9th international conference on machine learning and cybernetics.// pp. 3067-3072 Qingdao, 11-14 July, 2010.

Revision [4772]

Edited on 2010-07-13 11:26:30 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Detecting disease associated modules and prioritizing active genes based on high throughput data. ]]**--- //BMC Bioinformatics.// 11:26, 2010.
Deletions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, in press, 2010.
~1) **Yu-Qing Qiu**, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Detecting disease associated modules and prioritizing active genes based on high throughput data. ]]**--- //BMC Bioinformatics.// 11:26, 2010.

Revision [4771]

Edited on 2010-06-27 18:47:56 by YuqingQiu
Additions:
~1) **Yu-Qing Qiu**, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Detecting disease associated modules and prioritizing active genes based on high throughput data. ]]**--- //BMC Bioinformatics.// 11:26, 2010.

Revision [4734]

Edited on 2010-05-27 10:48:12 by LingyunWu
Additions:
~1) Ling-Yun Wu. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Haplotype Inference Models and Algorithms]]**--- Chapter in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.
Deletions:
~1) Ling-Yun Wu. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470505192.html Haplotype Inference Models and Algorithms]]**--- Chapter in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.

Revision [4733]

Edited on 2010-05-27 10:37:47 by LingyunWu
Additions:

~1) Xianwen Ren, Xiaobo Zhou, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.

Revision [4732]

Edited on 2010-05-21 15:06:33 by YongWang
Additions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, in press, 2010.
~1) Yong Wang, Eric Franzosa, Xiang-Sun Zhang, and Yu Xia. ---**[[http://nar.oxfordjournals.org/cgi/content/full/gkq353 Protein evolution in yeast transcription factor subnetworks]]**--- //Nucleic Acids Research//, in press, 2010.
~1) Yongcui Wang, Zhixia Yang, Yong Wang, and Nai-Yang Deng. ---**[[http://www.ingentaconnect.com/content/ben/lddd/2010/00000007/00000005/011aj Computationally probing drug-protein interactions via support vector machine]]**--- //Letters In Drug Design & Discovery//, 7(5), 370-378, 2010.

Revision [4731]

Edited on 2010-05-20 17:11:57 by LingyunWu
Deletions:
~1) Xiaobo Wang, Yongcui Wang, Yingjie Tian, Xiaojian Shao, Ling-Yun Wu, and Naiyang Deng. ---**Prediction of post-translational modification sites from sequences with kernel methods**--- //Journal of Computational Chemistry//, in press, 2010.

Revision [4660]

Edited on 2010-01-18 22:06:50 by LingyunWu
Additions:
~1) Ling-Yun Wu. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470505192.html Haplotype Inference Models and Algorithms]]**--- Chapter in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.
Deletions:
~1) Ling-Yun Wu. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470505192.html Haplotype Inference Models and Algorithms]]**--- Chapter in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley \& Sons, June, 2010.

Revision [4659]

Edited on 2010-01-18 22:06:34 by LingyunWu
Additions:
~1) Ling-Yun Wu, Xiaobo Zhou, and Stephen T. C. Wong. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470180935,subjectCd-MA23,descCd-tableOfContents.html Computational Imaging and Modeling for System Biology]]**--- Chapter 17 in //Elements of Computational Systems Biology//, Huma M. Lodhi and Stephen H. Muggleton (Editors). John Wiley & Sons, January, 2010.
~1) Ling-Yun Wu. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470505192.html Haplotype Inference Models and Algorithms]]**--- Chapter in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley \& Sons, June, 2010.
Deletions:
~1) Ling-Yun Wu, Xiaobo Zhou, and Stephen T. C. Wong.--- **[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470180935,subjectCd-MA23,descCd-tableOfContents.html Computational Imaging and Modeling for System Biology]]**--- Chapter 17 in //Elements of Computational Systems Biology//, Huma M. Lodhi and Stephen H. Muggleton (Editors). John Wiley & Sons, January, 2010.

Revision [4658]

Edited on 2010-01-18 21:52:10 by LingyunWu
Additions:
~1) Yan Xu, Xiao-Bo Wang, Jun Ding, Ling-Yun Wu, and Naiyang Deng. ---**Lysine acetylation sites prediction using an ensemble of support vector machine classifiers**--- //Journal of Theoretical Biology//, in press, 2010.
~1) Xiaobo Wang, Yongcui Wang, Yingjie Tian, Xiaojian Shao, Ling-Yun Wu, and Naiyang Deng. ---**Prediction of post-translational modification sites from sequences with kernel methods**--- //Journal of Computational Chemistry//, in press, 2010.

Revision [4648]

Edited on 2010-01-07 21:31:10 by YongWang
Additions:
~1) Zhong-Yuan Zhang, Tao Li, Chris Ding, Xian-Wen Ren, and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/y62142r517762595/fulltext.pdf Binary matrix factorization for analyzing gene expression data]]**--- // Data Mining and Knowledge Discovery//, 20(1), 28-52, 2010.

Revision [4628]

Edited on 2009-12-22 11:53:48 by LingyunWu
Additions:
~1) Lin Wang, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**SANA: an algorithm for sequential and non-sequential protein structure alignment**--- //Amino Acids//, in press, 2010.

Revision [4486]

Edited on 2009-10-15 15:55:48 by LingyunWu
Additions:
=== Books & Chapters ===
Deletions:
=== Books ===

Revision [4307]

Edited on 2009-09-03 11:13:46 by LingyunWu
Additions:
===== Publications - Bioinformatics 2010 =====
Deletions:
===== Publications - Bioinformatics 2009 =====

Revision [4306]

Edited on 2009-09-03 11:13:20 by LingyunWu

No Differences

Revision [4304]

The oldest known version of this page was created on 2009-09-03 11:12:35 by LingyunWu
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