Wiki source for PubBioinformatics2014
===== Publications - Bioinformatics 2014 =====
----
{{include page="PubBioinformaticsTOC"}}
----
=== Books & Chapters ===
=== Accepted Papers ===
~1) Yongcui Wang, Nai-Yang Deng, Shi-Long Chen, and **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**. ---**[[http://onlinelibrary.wiley.com/doi/10.1002/minf.201300090/abstract Computational Study of Drugs by Integrating Omics Data with Kernel Methods]]**--- //Molecular Informatics//. in press, 2014.
~1) Zhongkai Hu, Bo Jin, Andrew Young Shin, Chunqing Zhu, Yifan Zhao, Shiying Hao, Le Zheng, Changlin Fu, Qiaojun Wen, Jun Ji, Zhen Li, **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**, Xiaolin Zheng, Dorothy Dai, Devore S Culver, Shaun T Alfreds, Todd Rogow, Frank Stearns, Karl G Sylvester, Eric Widen, Xuefeng Ling. ---** [[Real Time Online Assessment of Total Population Risk of Future ED Utilizations: A Statewide Prospective Active Case Finding Study]]** --- //Interactive Journal of Medical Research//, In press, 2014.
=== Refereed Journal Papers ===
~1) Pengjun Zhang, **[[http://zhangroup.aporc.org/MengZou Meng Zou]]**, Xinyu Wen, Feng Gu, Juan Li, Gaixia Liu, Jingxiao Dong, Xinxin Deng, Jing Gao, Xiaolong Li, Xingwang Jia, Zhennan Dong, Luonan Chen, **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**, Yaping Tian. --- **[[http://onlinelibrary.wiley.com/doi/10.1002/ijc.28584/abstract Development of Serum Parameters Panels for the Early Detection of Pancreatic Cancer]]** --- //International Journal of Cancer//, 134(11):2646-55, 2014.
~1) NCI-DREAM Community, **Zhana Duren**, **Yong Wang**, **Junfei Zhao**, **Shihua Zhang**, and **Xiang-Sun Zhang** are listed as co-authors). --- **[[http://www.nature.com/nbt/journal/v32/n12/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms]]** --- //Nature Biotechnology//. 32, 1202–1212, 2014.
~1) Wenjun Mou, **[[http://zhangroup.aporc.org/ZhaoqiLiu Zhaoqi Liu]]**,Yuan Luo, **[[http://zhangroup.aporc.org/MengZou Meng Zou]]**, Chao Ren, Chunyan Zhang, Xinyu Wen, **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**, Yaping Tian. ---**[[http://link.springer.com/article/10.1007%2Fs12032-014-0059-8 Development and cross-validation of prognostic models to assess the treatment effect of cisplatin/pemetrexed chemotherapy in lung adenocarcinoma patients]]**--- //Medical oncology//, 31(9):59, 2014;
~1) **[[http://zhangroup.aporc.org/LinWang Lin Wang]]**, **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**, Qinghua Hu, Shao Li. ---**[[http://www.nature.com/psp/journal/v3/n11/full/psp201444a.html Systematic analysis of new drug indications by drug-gene-disease coherent subnetworks ]].**--- //CPT: Pharmacometrics & Systems Pharmacology//, 3, e146; 2014.
~1) Evangelos Pefanis*, **[[http://zhangroup.aporc.org/JiguangWang Jiguang Wang*]]**, Gerson Rothschild*, Junghyun Lim, Jaime Chao, Raul Rabadan, Aris N. Economides, Uttiya Basu ---**[[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13580.html Noncoding RNA transcription targets AID to divergently transcribed loci in B cells]]** --- //Nature//, doi:10.1038/nature13580, 2014. (* co-first authors).
~1) **[[http://zhangroup.aporc.org/JiguangWang Jiguang Wang*]]** ---**[[http://math.scichina.com:8081/sciA/CN/abstract/abstract514035.shtml The research on molecular network models of complex disease (in Chinese).]] **--- //Sci Sin Math//, 44(4): 317-328, doi: 10.1360/012013-143, 2014.
~1) D Rossi, H Khiabanian, V Spina, C Ciardullo, A Bruscaggin, R Famà, Silvia Rasi, Sara Monti, Clara Deambrogi, Lorenzo De Paoli, **[[http://zhangroup.aporc.org/JiguangWang Jiguang Wang]]**, Valter Gattei, Anna Guarini, Robin Foà, Raul Rabadan, and Gianluca Gaidano. --- **[[http://bloodjournal.hematologylibrary.org/content/early/2014/02/05/blood-2013-11-539726.short Clinical impact of small TP53 mutated subclones in chronic lymphocytic leukemia.]]** --- //Blood//, blood-2013-11-539726, 2014.
~1) J Zhou, J Wu1, B Li1, D Liu, J Yu, X Yan, S Zheng, **[[http://zhangroup.aporc.org/JiguangWang J Wang]]**, L Zhang, L Zhang, F He, Q Li, A Chen, Y Zhang, X Zhao, Y Guan, X Zhao, J Yan1, J Ni, M A Nobrega, B Löwenberg, R Delwel, P J M Valk, A Kumar, L Xie, D G Tenen, G Huang and Q-f Wang. ---** [[http://www.nature.com/leu/journal/vaop/ncurrent/full/leu2013384a.html PU. 1 is essential for MLL leukemia partially via crosstalk with the MEIS/HOX pathway.]] **--- //Leukemia//, doi: 10.1038/leu.2013.384, 2014.
~1) Zhaoqi Liu, Xiang-Sun Zhang, Shihua Zhang. ---**[[http://www.nature.com/srep/2014/140206/srep04002/full/srep04002.html Breast tumour subgroups reveal diverse clinical predictive power.]] **---//Scientific Report//, (2014), 4: 4002.
~1) Junfei Zhao, Xiang-Sun Zhang, Shihua Zhang ---**[[http://www.nature.com/psp/journal/v3/n2/abs/psp201379a.html Predicting cooperative drug effects by the quantitative cellular profiling of response to individual drugs.]] **---//CPT: Pharmacometrics and Systems Pharmacology//, (2014), 3: e102.
~1) Junhua Zhang, Ling-Yun Wu, Xiang-Sun Zhang and Shihua Zhang ---**[[http://www.biomedcentral.com/1471-2105/15/271 Discovery of co-occurring driver pathways in cancer.]] **---//BMC bioinformatics//,(2014), 15 (1), 271.
~1) **[[http://zhangroup.aporc.org/JiguangWang Jiguang Wang#]]**, Hossein Khiabanian, Davide Rossi, Giulia Fabbri, Valter Gattei, Francesco Forconi, Luca Laurenti, Roberto Marasca, Giovanni Del Poeta, Robin Foà, Laura Pasqualucci, Gianluca Gaidano, Raul Rabadan# ---**[[http://elifesciences.org/content/3/e02869 Tumor evolutionary directed graphs and the history of chronic lymphocytic leukemia]]** --- //eLife//, DOI:10.7554/eLife.02869, 2014. (#corresponding authors).
=== Proceedings Papers ===
CategoryPublication
----
{{include page="PubBioinformaticsTOC"}}
----
=== Books & Chapters ===
=== Accepted Papers ===
~1) Yongcui Wang, Nai-Yang Deng, Shi-Long Chen, and **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**. ---**[[http://onlinelibrary.wiley.com/doi/10.1002/minf.201300090/abstract Computational Study of Drugs by Integrating Omics Data with Kernel Methods]]**--- //Molecular Informatics//. in press, 2014.
~1) Zhongkai Hu, Bo Jin, Andrew Young Shin, Chunqing Zhu, Yifan Zhao, Shiying Hao, Le Zheng, Changlin Fu, Qiaojun Wen, Jun Ji, Zhen Li, **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**, Xiaolin Zheng, Dorothy Dai, Devore S Culver, Shaun T Alfreds, Todd Rogow, Frank Stearns, Karl G Sylvester, Eric Widen, Xuefeng Ling. ---** [[Real Time Online Assessment of Total Population Risk of Future ED Utilizations: A Statewide Prospective Active Case Finding Study]]** --- //Interactive Journal of Medical Research//, In press, 2014.
=== Refereed Journal Papers ===
~1) Pengjun Zhang, **[[http://zhangroup.aporc.org/MengZou Meng Zou]]**, Xinyu Wen, Feng Gu, Juan Li, Gaixia Liu, Jingxiao Dong, Xinxin Deng, Jing Gao, Xiaolong Li, Xingwang Jia, Zhennan Dong, Luonan Chen, **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**, Yaping Tian. --- **[[http://onlinelibrary.wiley.com/doi/10.1002/ijc.28584/abstract Development of Serum Parameters Panels for the Early Detection of Pancreatic Cancer]]** --- //International Journal of Cancer//, 134(11):2646-55, 2014.
~1) NCI-DREAM Community, **Zhana Duren**, **Yong Wang**, **Junfei Zhao**, **Shihua Zhang**, and **Xiang-Sun Zhang** are listed as co-authors). --- **[[http://www.nature.com/nbt/journal/v32/n12/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms]]** --- //Nature Biotechnology//. 32, 1202–1212, 2014.
~1) Wenjun Mou, **[[http://zhangroup.aporc.org/ZhaoqiLiu Zhaoqi Liu]]**,Yuan Luo, **[[http://zhangroup.aporc.org/MengZou Meng Zou]]**, Chao Ren, Chunyan Zhang, Xinyu Wen, **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**, Yaping Tian. ---**[[http://link.springer.com/article/10.1007%2Fs12032-014-0059-8 Development and cross-validation of prognostic models to assess the treatment effect of cisplatin/pemetrexed chemotherapy in lung adenocarcinoma patients]]**--- //Medical oncology//, 31(9):59, 2014;
~1) **[[http://zhangroup.aporc.org/LinWang Lin Wang]]**, **[[http://zhangroup.aporc.org/YongWang Yong Wang]]**, Qinghua Hu, Shao Li. ---**[[http://www.nature.com/psp/journal/v3/n11/full/psp201444a.html Systematic analysis of new drug indications by drug-gene-disease coherent subnetworks ]].**--- //CPT: Pharmacometrics & Systems Pharmacology//, 3, e146; 2014.
~1) Evangelos Pefanis*, **[[http://zhangroup.aporc.org/JiguangWang Jiguang Wang*]]**, Gerson Rothschild*, Junghyun Lim, Jaime Chao, Raul Rabadan, Aris N. Economides, Uttiya Basu ---**[[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13580.html Noncoding RNA transcription targets AID to divergently transcribed loci in B cells]]** --- //Nature//, doi:10.1038/nature13580, 2014. (* co-first authors).
~1) **[[http://zhangroup.aporc.org/JiguangWang Jiguang Wang*]]** ---**[[http://math.scichina.com:8081/sciA/CN/abstract/abstract514035.shtml The research on molecular network models of complex disease (in Chinese).]] **--- //Sci Sin Math//, 44(4): 317-328, doi: 10.1360/012013-143, 2014.
~1) D Rossi, H Khiabanian, V Spina, C Ciardullo, A Bruscaggin, R Famà, Silvia Rasi, Sara Monti, Clara Deambrogi, Lorenzo De Paoli, **[[http://zhangroup.aporc.org/JiguangWang Jiguang Wang]]**, Valter Gattei, Anna Guarini, Robin Foà, Raul Rabadan, and Gianluca Gaidano. --- **[[http://bloodjournal.hematologylibrary.org/content/early/2014/02/05/blood-2013-11-539726.short Clinical impact of small TP53 mutated subclones in chronic lymphocytic leukemia.]]** --- //Blood//, blood-2013-11-539726, 2014.
~1) J Zhou, J Wu1, B Li1, D Liu, J Yu, X Yan, S Zheng, **[[http://zhangroup.aporc.org/JiguangWang J Wang]]**, L Zhang, L Zhang, F He, Q Li, A Chen, Y Zhang, X Zhao, Y Guan, X Zhao, J Yan1, J Ni, M A Nobrega, B Löwenberg, R Delwel, P J M Valk, A Kumar, L Xie, D G Tenen, G Huang and Q-f Wang. ---** [[http://www.nature.com/leu/journal/vaop/ncurrent/full/leu2013384a.html PU. 1 is essential for MLL leukemia partially via crosstalk with the MEIS/HOX pathway.]] **--- //Leukemia//, doi: 10.1038/leu.2013.384, 2014.
~1) Zhaoqi Liu, Xiang-Sun Zhang, Shihua Zhang. ---**[[http://www.nature.com/srep/2014/140206/srep04002/full/srep04002.html Breast tumour subgroups reveal diverse clinical predictive power.]] **---//Scientific Report//, (2014), 4: 4002.
~1) Junfei Zhao, Xiang-Sun Zhang, Shihua Zhang ---**[[http://www.nature.com/psp/journal/v3/n2/abs/psp201379a.html Predicting cooperative drug effects by the quantitative cellular profiling of response to individual drugs.]] **---//CPT: Pharmacometrics and Systems Pharmacology//, (2014), 3: e102.
~1) Junhua Zhang, Ling-Yun Wu, Xiang-Sun Zhang and Shihua Zhang ---**[[http://www.biomedcentral.com/1471-2105/15/271 Discovery of co-occurring driver pathways in cancer.]] **---//BMC bioinformatics//,(2014), 15 (1), 271.
~1) **[[http://zhangroup.aporc.org/JiguangWang Jiguang Wang#]]**, Hossein Khiabanian, Davide Rossi, Giulia Fabbri, Valter Gattei, Francesco Forconi, Luca Laurenti, Roberto Marasca, Giovanni Del Poeta, Robin Foà, Laura Pasqualucci, Gianluca Gaidano, Raul Rabadan# ---**[[http://elifesciences.org/content/3/e02869 Tumor evolutionary directed graphs and the history of chronic lymphocytic leukemia]]** --- //eLife//, DOI:10.7554/eLife.02869, 2014. (#corresponding authors).
=== Proceedings Papers ===
CategoryPublication
