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This is an old revision of PubBioinformatics2012 made by ZhongyuanZhang on 2013-07-05 09:26:39.


Publications - Bioinformatics 2012

2002-2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 |2015

Books & Chapters

Accepted Papers

Refereed Journal Papers

  1. Wei Song*, Jiguang Wang*, Ying Yang, Nai-He Jing, Xiang-Sun Zhang, Luonan Chen, Jia-Rui Wu
    Rewiring drug-activated p53-regulatory network from suppressing to promoting tumorigenesis.
    Journal of Molecular Cell Biology, doi:10.1093/jmcb/mjs029 (* co-first authors).
  1. Xiang-Sun Zhang, Zhenping Li, Rui-Sheng Wang, and Yong Wang
    A combinatorial model and algorithm for globally searching community structure in complex networks
    Journal of Combinatorial Optimization, 23(4): 425-442, 2012.
  1. Hui-Jia Li, Yong Wang, Ling-Yun Wu, Junhua Zhang and Xiang-Sun Zhang
    Potts model based on a Markov process computation solves the community structure problem effectively
    Physical Review E, 86: 016109, 2012.
  1. Hui-Jia Li, Yong Wang, Ling-Yun Wu, Zhi-Ping Liu, Luonan Chen and Xiang-Sun Zhang
    Community structure detection based on Potts model and network's spectral characterization
    Europhysics Letters, 97: 48005, 2012.
  1. Hui-Jia Li, Junhua Zhang, Zhi-Ping Liu, Luonan Chen and Xiang-Sun Zhang
    Identify overlapping communities in social networks using multi-scale local information expansion
    European Physical Journal B, 85(6): 190, 2012.
  1. Zhi-Ping Liu, Yong Wang. Xiang-Sun Zhang, Luonan Chen.
    Network-based analysis of complex diseases
    IET Systems Biology, 6(1): 122-133, 2012.
  1. Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen.
    Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs.
    BMC Bioinformatics, 13(Suppl 7): S6, 2012.
  1. Lin Wang, Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen.
    Prediction of hot spots in protein interfaces using a random forest model with hybrid features
    Protein Engineering Design and Selection, 25(3):119-126, 2012.
  1. Xianwen Ren, Yong Wang, Jiguang Wang and Xiang-Sun Zhang.
    A unified computational model for revealing and predicting subtle subtypes of cancers
    BMC Bioinformatics 13:70, 2012.
  1. Zhong-Yuan Zhang
    Divergence Functions of Nonnegative Matrix Factorization: A Comparison Study.
    Communications in Statistics - Simulation and Computation, 40: 1594-1612, 2012.
  1. Yong Wang, Xiang-Sun Zhang, and Luonan Chen.
    Modelling biological systems from molecules to dynamical networks.
    BMC Systems Biology, 6(Suppl 1):S1, 2012.
  1. Chen Chen, Jun-Fei Zhao, Qiang Huang, Rui-Sheng Wang, and Xiang-Sun Zhang.
    Inferring domain-domain interactions from protein-protein interactions in the complex network conformation.
    BMC Systems Biology, 6(Suppl 1):S7, 2012.
  1. Yong Wang, Qiao-Feng Wu, Chen Chen, Ling-Yun Wu, Xian-Zhong Yan, Shu-Guang Yu, Xiang-Sun Zhang, and Fan-Rong Liang.
    Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection.
    BMC Systems Biology, 6(Suppl 1):S15, 2012.
  1. Yongcui Wang, Xianwen Ren, Chunhua Zhang, Naiyang Deng, Xiang-Sun Zhang.
    Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction
    Journal of Theoretical Biology 315(21): 64-70, 2012.
  1. Xianwen Ren, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin.
    ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions
    Nucleic Acids Research, 2012.

Proceedings Papers

  1. Duren Zhana, Yong Wang, Shigeru Saito, Katsuhisa Horimoto.
    Inferring Gene Regulatory Network for Cell Reprogramming.
    . Proceedings of The 31th Chinese Control Conference (CCC), pp. 7437-7442, Anhui, 2012.
  1. Zhi-Ping Liu, Wanwei Zhang, Katsuhisa Horimoto, Luonan Chen.
    A Gaussian Graphical Model for Identifying Significantly Responsive Regulatory Networks from Time Series Gene Expression Data.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 142-147.
  1. Xinjian Zhuo.
    Analysis of a HBV Infection Model With Non-cytolytic Cure Process.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 148-151.
  1. Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang.
    CNetA: Network alignment by combining biological and topological features.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 220-225.
  1. Changhe Fu, Ling Jing, Su Deng, Guangxu Jin.
    Identification of Oncogenic Genes for Colon Adenocarcinoma from Genomics Data.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 263-266.
  1. Junhua Zhang, Shihua Zhang, Yong Wang, Junfei Zhao, Xiang-Sun Zhang.
    Identifying Mutated Core Modules in Glioblastoma by Integrative Network Analysis.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 304-309.
  1. Xinxin Wang, Zhana Duren, Chao Zhang, Lin Chen, Yong Wang.
    Clinical Data Analysis Reveals Three Subytpes of Gastric Cancer.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 315-320.
  1. Hui-Jia Li, Zhi-Ping Liu, Luonan Chen and Xiang-Sun Zhang
    Identification of overlapping communities in protein interaction networks using multi-scale local information expansion.
    2012 10th World Congress on Intelligent Control and Automation (WCICA), pp. 5071-5076
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