Additions:
~1) Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.biomedcentral.com/qc/1752-0509/4/S2/S1 Optimization Meets Systems Biology.]]**--- //BMC Systems Biology//, Vol. 4, Suppl 2, S1, 2010.--- SCI;
~1) Tingting Gao, Zhixia Yang, Yong Wang, Ling Jing. ---**[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WMD-4XGBG64-1&_user=1999482&_coverDate=02%2F21%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000050602&_version=1&_urlVersion=0&_userid=1999482&md5=ed86676e176a49bb8aa4e34c74836a87&searchtype=a Identifying translation initiation sites in prokaryotes using support vector machine.]]**--- //Journal of Theoretical Biology//, Vol. 262, No. 4, 644-649, 2010.--- SCI; Funding: NSFC(10631070, 10801131)
~1) Lin Wang, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://www.springerlink.com/content/85083565w7877872/ SANA: an algorithm for sequential and non-sequential protein structure alignment]]**--- //Amino Acids//, Vol. 39, No. 2, 417-425, 2010. --- SCI; Funding: NSFC(10631070, 60503004), JSPS-NSFC (10711140116).
Deletions:
~1) Lin Wang, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**SANA: an algorithm for sequential and non-sequential protein structure alignment**--- //Amino Acids//, in press, 2010.
Additions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/13/1616 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.--- SCI; Funding: NSFC(10631070, 60873205), 973(2006CB503905)
Deletions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.--- SCI; Funding: NSFC(10631070, 60873205), 973(2006CB503905)
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Additions:
~1) Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1752-0509/4/S2/S11/abstract Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains]]**--- //BMC Systems Biology//, 4(Suppl 2):S11.---SCI; Funding: NSFC(10631070, 60873205), 973(2006CB503905)
Additions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.--- SCI; Funding: NSFC(10631070, 60873205), 973(2006CB503905)
Deletions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.--- SCI; Funding: NSFC(10631070), 973(2006CB503905)
Additions:
~1) Zheng Xia, Ling-Yun Wu, Xiaobo Zhou, and Stephen TC Wong. ---**[[http://www.biomedcentral.com/qc/1752-0509/4/S2/S6 Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces.]]**--- //BMC Systems Biology//, Vol. 4, Suppl 2, S6, 2010.--- SCI;
Additions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- Proceedings of the 9th International Conference on Machine Learning and Cybernetics. pp. 3067-3072, Qingdao, China, 2010.--- EI; Funding: 973(2006CB503905), NSFC(10631070, 10801131)
Deletions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- Proceedings of the 9th International Conference on Machine Learning and Cybernetics. pp. 3067-3072, Qingdao, China, 2010.
Additions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.--- SCI; Funding: NSFC(10631070), 973(2006CB503905)
Deletions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.
Additions:
~1) Xianwen Ren, Xiaobo Zhou, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.--- SCI; Funding: NSFC(60873205), 973(2006CB503905)
Deletions:
~1) Xianwen Ren, Xiaobo Zhou, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.
Additions:
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Detecting disease associated modules and prioritizing active genes based on high throughput data. ]]**--- //BMC Bioinformatics.// 11:26, 2010.--- SCI; Funding: 973(2006CB503905), NSFC(60873205, 10801131), CAS(kjcx-yw-s7)
Deletions:
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Detecting disease associated modules and prioritizing active genes based on high throughput data. ]]**--- //BMC Bioinformatics.// 11:26, 2010.
Additions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- Proceedings of the 9th International Conference on Machine Learning and Cybernetics. pp. 3067-3072, Qingdao, China, 2010.
Deletions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- //Proceedings of the 9th International Conference on Machine Learning and Cybernetics.// pp. 3067-3072, Qingdao, China, 2010.
Additions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.icmlc.com/program/ICMLC_proceedingsPaper.pdf Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- //Proceedings of the 9th International Conference on Machine Learning and Cybernetics.// pp. 3067-3072, Qingdao, China, 2010.
Deletions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- //Proceedings of the 9th international conference on machine learning and cybernetics.// pp. 3067-3072 Qingdao, 11-14 July, 2010.
Additions:
~1) Zhi-Ping Liu, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ]]**--- //Proceedings of the 9th international conference on machine learning and cybernetics.// pp. 3067-3072 Qingdao, 11-14 July, 2010.
Additions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, 26(13):1616-1622, 2010.
~1) Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Detecting disease associated modules and prioritizing active genes based on high throughput data. ]]**--- //BMC Bioinformatics.// 11:26, 2010.
Deletions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, in press, 2010.
~1) **Yu-Qing Qiu**, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Detecting disease associated modules and prioritizing active genes based on high throughput data. ]]**--- //BMC Bioinformatics.// 11:26, 2010.
Additions:
~1) **Yu-Qing Qiu**, Shihua Zhang, Xiang-Sun Zhang and Luonan Chen. ---**[[http://www.biomedcentral.com/1471-2105/11/26 Detecting disease associated modules and prioritizing active genes based on high throughput data. ]]**--- //BMC Bioinformatics.// 11:26, 2010.
Additions:
~1) Ling-Yun Wu. ---**[[http://www.amazon.com/Algorithms-Computational-Molecular-Biology-Bioinformatics/dp/0470505192 Haplotype Inference Models and Algorithms]]**--- Chapter in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.
Deletions:
~1) Ling-Yun Wu. ---**[[http://as.wiley.com/WileyCDA/WileyTitle/productCd-0470505192.html Haplotype Inference Models and Algorithms]]**--- Chapter in //Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications//, Mourad Elloumi and Albert Y. Zomaya (Editors). John Wiley & Sons, June, 2010.
Additions:
~1) Xianwen Ren, Xiaobo Zhou, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.
Additions:
~1) Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, and Luonan Chen. ---**[[http://bioinformatics.oxfordjournals.org/cgi/reprint/btq253v1 Prediction of protein-RNA binding sites by a random forest method with combined features]]**--- //Bioinformatics//, in press, 2010.
~1) Yong Wang, Eric Franzosa, Xiang-Sun Zhang, and Yu Xia. ---**[[http://nar.oxfordjournals.org/cgi/content/full/gkq353 Protein evolution in yeast transcription factor subnetworks]]**--- //Nucleic Acids Research//, in press, 2010.
~1) Yongcui Wang, Zhixia Yang, Yong Wang, and Nai-Yang Deng. ---**[[http://www.ingentaconnect.com/content/ben/lddd/2010/00000007/00000005/011aj Computationally probing drug-protein interactions via support vector machine]]**--- //Letters In Drug Design & Discovery//, 7(5), 370-378, 2010.