ZHANGroup: LinWang

Revision [4747]

Last edited on 2010-06-06 17:47:34 by LinWang

Additions:

3. Modularity optimization in community detection of complex networks. Zhang, X. S.; Wang, R. S.; Wang, Y.;
Wang, J.; Qiu, Y.; **Wang, L**.; Chen, L. //Europhysics Letters//. Vol 87, 209. (SCI)

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Revision [4746]

Edited on 2010-06-06 17:43:49 by LinWang

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1. SANA: an algorithm for sequential and non-sequential protein structure alignment. **Lin Wang**, Ling-Yun Wu,
Yong Wang, Xiang-Sun Zhang, Luonan Chen. //Amino Acids//. Accepted. (SCI)
2. Recognition of structure similarities in proteins. **Lin WANG**,Yuqing QIU, Jiguang WANG, Xiangsun ZHANG.
//Journal of Systems Sciences and Complexity.//Vol 21, 2008. (SCI)
3.

Deletions:

1. SANA: an algorithm for sequential and non-sequential protein structure alignment. Lin Wang, Ling-Yun Wu,
Yong Wang, Xiang-Sun Zhang, Luonan Chen. //Amino Acids//. Accepted.
2. Recognition of structure similarities in proteins. Lin WANG,Yuqing QIU, Jiguang WANG, Xiangsun ZHANG.
//Journal of Systems Sciences and Complexity.//Vol 21, 2008.

Revision [4745]

Edited on 2010-06-06 17:40:46 by LinWang

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2. Recognition of structure similarities in proteins. Lin WANG,Yuqing QIU, Jiguang WANG, Xiangsun ZHANG.
//Journal of Systems Sciences and Complexity.//Vol 21, 2008.

Revision [4744]

Edited on 2010-06-06 17:34:27 by LinWang

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Yong Wang, Xiang-Sun Zhang, Luonan Chen. //Amino Acids//. Accepted.

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~~Yong Wang, Xiang-Sun Zhang, Luonan Chen. Amino Acids. Accepted.~~

Revision [4743]

Edited on 2010-06-06 17:34:03 by LinWang

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Ph.D., 2006.9 ~ 2009.7, Academy of Mathematics & Systems Science, CAS.
Publication
1. SANA: an algorithm for sequential and non-sequential protein structure alignment. Lin Wang, Ling-Yun Wu,
Yong Wang, Xiang-Sun Zhang, Luonan Chen. Amino Acids. Accepted.

Deletions:

Ph.D., 2006.9 ~ Now, Academy of Mathematics & Systems Science, CAS.
Software and Supplementary data
**SANA**
protein **S**tructure **A**lignment by **N**eighborhood **A**lignment
**Method**
SANA is an algorithm for the alignment of two proteins. Specifically, core regions in two protein structures are first
aligned by identifying connected components in a network of neighboring, geometrically compatible aligned fragment pairs (AFPs).
The initial alignments then are refined through a multi-objective optimization method. The algorithm can produce both sequential
and non-sequential alignments.
**REFERENCE**
Lin Wang,Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen. SANA: an algorithm for sequential and non-sequential protein structure alignment.
In submission.
**SOFTWARE**
This version of the program is in very preliminary stage and provided just for testing purpose. The program is still under development.
[[http://zhangroup.aporc.org/images/files/SANA.exe SANA.exe (Windows version of Protein Structure Alignment Tool) ]]
[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]

Revision [4742]

Edited on 2010-06-06 17:27:08 by LinWang

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天津科技大学计算机信息与工程学院,讲师
中国科学院数学与系统科学研究院博士,2009.
Lecturer, Computer Information and Engineering School, Tianjin University of Science and Technology.
**SANA**
protein **S**tructure **A**lignment by **N**eighborhood **A**lignment

Deletions:

中国科学院数学与系统科学研究院博士研究生
**SANA**
protein **S**tructure **A**lignment by **N**eighborhood **A**lignment

Revision [3847]

Edited on 2009-01-24 19:23:47 by LinWang

Additions:

[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]

Deletions:

~~[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]~~

Revision [3846]

Edited on 2009-01-24 19:20:16 by LinWang

Additions:

[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]

Deletions:

~~[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar Supplementary Data.rar (Supplementary data for computational experiments of SANA)]]~~

Revision [3845]

Edited on 2009-01-24 19:19:45 by LinWang

Additions:

[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar Supplementary Data.rar (Supplementary data for computational experiments of SANA)]]

Deletions:

~~[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]~~

Revision [3775]

Edited on 2008-11-24 12:04:58 by LinWang

Additions:

**SANA**
protein **S**tructure **A**lignment by **N**eighborhood **A**lignment

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SANA
protein Structure Alignment by Neighborhood Alignment

Revision [3774]

Edited on 2008-11-24 12:03:39 by LinWang

Additions:

SANA
protein Structure Alignment by Neighborhood Alignment
**Method**
SANA is an algorithm for the alignment of two proteins. Specifically, core regions in two protein structures are first
aligned by identifying connected components in a network of neighboring, geometrically compatible aligned fragment pairs (AFPs).
The initial alignments then are refined through a multi-objective optimization method. The algorithm can produce both sequential
and non-sequential alignments.
**REFERENCE**
Lin Wang,Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen. SANA: an algorithm for sequential and non-sequential protein structure alignment.
In submission.
**SOFTWARE**
This version of the program is in very preliminary stage and provided just for testing purpose. The program is still under development.

Deletions:

SANA
protein Structure Alignment by Neighborhood Alignment

Revision [3773]

Edited on 2008-11-24 11:55:46 by LinWang

Additions:

SANA
protein Structure Alignment by Neighborhood Alignment

Revision [3720]

Edited on 2008-09-21 12:04:18 by LinWang

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[[http://zhangroup.aporc.org/images/files/SANA.exe SANA.exe (Windows version of Protein Structure Alignment Tool) ]]
[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]

Deletions:

[[http://zhangroup.aporc.org/images/files/SANA.exe SANA (Protein Structure Alignment Tool) ]]
[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]

Revision [3719]

Edited on 2008-09-21 12:02:10 by LinWang

Additions:

[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]

Deletions:

~~[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar (Supplementary data for computational experiments of SANA)]]~~

Revision [3718]

Edited on 2008-09-21 12:01:16 by LinWang

Additions:

[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar (Supplementary data for computational experiments of SANA)]]

Deletions:

~~[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar Data (Supplementary data for computational experiments of SANA)]]~~

Revision [3717]

Edited on 2008-09-21 12:00:12 by LinWang

Additions:

[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar Data (Supplementary data for computational experiments of SANA)]]

Deletions:

~~[[http://zhangroup.aporc.org/images/files/Supplementary_data.rar Data (Supplementary data for computational experiments of SANA)]]~~

Revision [3716]

Edited on 2008-09-21 11:58:37 by LinWang

Additions:

[[http://zhangroup.aporc.org/images/files/Supplementary_data.rar Data (Supplementary data for computational experiments of SANA)]]

Deletions:

~~[[http://zhangroup.aporc.org/images/files/Supplementary_data.rar (Supplementary data for computational experiments of SANA)]]~~

Revision [3715]

Edited on 2008-09-21 11:55:16 by LinWang

Additions:

[[http://zhangroup.aporc.org/images/files/Supplementary_data.rar (Supplementary data for computational experiments of SANA)]]

Deletions:

~~[[http://zhangroup.aporc.org/images/files/Supplementary data.rar (Supplementary data for computational experiments of SANA)]]~~

Revision [3714]

Edited on 2008-09-21 11:52:59 by LinWang

Additions:

[[http://zhangroup.aporc.org/images/files/Supplementary data.rar (Supplementary data for computational experiments of SANA)]]

Deletions:

~~[[http://zhangroup.aporc.org/images/files/Supplementary data.rar Supplementary data for computational experiments of SANA]]~~

Revision [3713]

The oldest known version of this page was created on 2008-09-21 11:52:17 by LinWang