Revision history for LinWang
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==Reference==
Wang L, Liu ZP, Zhang XS, and Chen L. Prediction of hot spots in protein interfaces using a random forest model with hybrid features.
In Submission.
==Introduction==
This is an webpage for our paper "Prediction of hot spots in protein interfaces using a random forest model with hybrid features".
In the paper we present a novel random forest model for hot spot prediction. It effectively integrates hybrid features which
incorporates a wider range of information of the target residue and its two neighbor residues, i.e., the nearest contact residue
in the other face (mirror-contact residue) and the nearest contact residue in the same face (intra-contact residue). The dataset,
source code and supporting materials are available here.
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==HotSpot==: Prediction of hot spots in protein interfaces using a random forest model with hybrid features
==Reference==
Wang L, Liu ZP, Zhang XS, and Chen L. Prediction of hot spots in protein interfaces using a random forest model with hybrid features.
In Submission.
==Introduction==
This is an webpage for our paper "Prediction of hot spots in protein interfaces using a random forest model with hybrid features".
In the paper we present a novel random forest model for hot spot prediction. It effectively integrates hybrid features which
incorporates a wider range of information of the target residue and its two neighbor residues, i.e., the nearest contact residue
in the other face (mirror-contact residue) and the nearest contact residue in the same face (intra-contact residue). The dataset,
source code and supporting materials are available here.
==Reference==
Wang L, Liu ZP, Zhang XS, and Chen L. Prediction of hot spots in protein interfaces using a random forest model with hybrid features.
In Submission.
==Introduction==
This is an webpage for our paper "Prediction of hot spots in protein interfaces using a random forest model with hybrid features".
In the paper we present a novel random forest model for hot spot prediction. It effectively integrates hybrid features which
incorporates a wider range of information of the target residue and its two neighbor residues, i.e., the nearest contact residue
in the other face (mirror-contact residue) and the nearest contact residue in the same face (intra-contact residue). The dataset,
source code and supporting materials are available here.
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//Journal of Systems Sciences and Complexity. //Vol 21, 2008. (SCI)
Wang, J.; Qiu, Y.; **Wang, L**.; Chen, L. //Europhysics Letters. // Vol 87, 209. (SCI)
Wang, J.; Qiu, Y.; **Wang, L**.; Chen, L. //Europhysics Letters. // Vol 87, 209. (SCI)
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Wang, J.; Qiu, Y.; **Wang, L**.; Chen, L. //Europhysics Letters//. Vol 87, 209. (SCI)
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Yong Wang, Xiang-Sun Zhang, Luonan Chen. //Amino Acids. //Vol 39, 2010. (SCI)
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Yong Wang, Xiang-Sun Zhang, Luonan Chen. //Amino Acids//Vol 39, 2010. (SCI)
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=== {{color c="green" text="Hobbies "}}===
==={{color c="green" text="Publications"}} ===
==={{color c="green" text="Publications"}} ===
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Publication
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=== {{color c="green" text="Educational Background"}} ===
=== {{color c="green" text="Research Areas and Interests"}} ===
Information Security
=== {{color c="green" text="Research Areas and Interests"}} ===
Information Security
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Research Areas and Interests
Optimization problems in transportation
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{{color c="purple" text="Email"}} : linwang@tust.edu.cn
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Email : linwang@tust.edu.cn
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B.S.:Shanxi University,Taiyuan,Shanxi Province,China,
M.S.:Wuhan University,Wuhan,Hubei Province,China,
Email : wlin19821102@126.com
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==Assistant Professor ==
==Computer Information and Engineering School==
==Tianjin University of Science and Technology==
==Computer Information and Engineering School==
==Tianjin University of Science and Technology==
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======Dr. Lin Wang======
Assistant Professor, Computer Information and Engineering School, Tianjin University of Science and Technology.
Assistant Professor, Computer Information and Engineering School, Tianjin University of Science and Technology.
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天津科技大学计算机信息与工程学院,讲师
中国科学院数学与系统科学研究院博士,2009.
理学学士（山西大学）, 2004；理学硕士（武汉大学）, 2006
Lecturer, Computer Information and Engineering School, Tianjin University of Science and Technology.
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3. Modularity optimization in community detection of complex networks. Zhang, X. S.; Wang, R. S.; Wang, Y.;
Wang, J.; Qiu, Y.; **Wang, L**.; Chen, L. //Europhysics Letters//. Vol 87, 209. (SCI)
Wang, J.; Qiu, Y.; **Wang, L**.; Chen, L. //Europhysics Letters//. Vol 87, 209. (SCI)
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1. SANA: an algorithm for sequential and non-sequential protein structure alignment. **Lin Wang**, Ling-Yun Wu,
Yong Wang, Xiang-Sun Zhang, Luonan Chen. //Amino Acids//. Accepted. (SCI)
2. Recognition of structure similarities in proteins. **Lin WANG**,Yuqing QIU, Jiguang WANG, Xiangsun ZHANG.
//Journal of Systems Sciences and Complexity.//Vol 21, 2008. (SCI)
3.
Yong Wang, Xiang-Sun Zhang, Luonan Chen. //Amino Acids//. Accepted. (SCI)
2. Recognition of structure similarities in proteins. **Lin WANG**,Yuqing QIU, Jiguang WANG, Xiangsun ZHANG.
//Journal of Systems Sciences and Complexity.//Vol 21, 2008. (SCI)
3.
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Yong Wang, Xiang-Sun Zhang, Luonan Chen. //Amino Acids//. Accepted.
2. Recognition of structure similarities in proteins. Lin WANG,Yuqing QIU, Jiguang WANG, Xiangsun ZHANG.
//Journal of Systems Sciences and Complexity.//Vol 21, 2008.
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2. Recognition of structure similarities in proteins. Lin WANG,Yuqing QIU, Jiguang WANG, Xiangsun ZHANG.
//Journal of Systems Sciences and Complexity.//Vol 21, 2008.
//Journal of Systems Sciences and Complexity.//Vol 21, 2008.
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Yong Wang, Xiang-Sun Zhang, Luonan Chen. //Amino Acids//. Accepted.
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Ph.D., 2006.9 ~ 2009.7, Academy of Mathematics & Systems Science, CAS.
Publication
1. SANA: an algorithm for sequential and non-sequential protein structure alignment. Lin Wang, Ling-Yun Wu,
Yong Wang, Xiang-Sun Zhang, Luonan Chen. Amino Acids. Accepted.
Publication
1. SANA: an algorithm for sequential and non-sequential protein structure alignment. Lin Wang, Ling-Yun Wu,
Yong Wang, Xiang-Sun Zhang, Luonan Chen. Amino Acids. Accepted.
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Software and Supplementary data
**SANA**
protein **S**tructure **A**lignment by **N**eighborhood **A**lignment
**Method**
SANA is an algorithm for the alignment of two proteins. Specifically, core regions in two protein structures are first
aligned by identifying connected components in a network of neighboring, geometrically compatible aligned fragment pairs (AFPs).
The initial alignments then are refined through a multi-objective optimization method. The algorithm can produce both sequential
and non-sequential alignments.
**REFERENCE**
Lin Wang,Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen. SANA: an algorithm for sequential and non-sequential protein structure alignment.
In submission.
**SOFTWARE**
This version of the program is in very preliminary stage and provided just for testing purpose. The program is still under development.
[[http://zhangroup.aporc.org/images/files/SANA.exe SANA.exe (Windows version of Protein Structure Alignment Tool) ]]
[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]
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天津科技大学计算机信息与工程学院,讲师
中国科学院数学与系统科学研究院博士,2009.
Lecturer, Computer Information and Engineering School, Tianjin University of Science and Technology.
**SANA**
protein **S**tructure **A**lignment by **N**eighborhood **A**lignment
中国科学院数学与系统科学研究院博士,2009.
Lecturer, Computer Information and Engineering School, Tianjin University of Science and Technology.
**SANA**
protein **S**tructure **A**lignment by **N**eighborhood **A**lignment
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**SANA**
protein **S**tructure **A**lignment by **N**eighborhood **A**lignment
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[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]
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[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]
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[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar Supplementary Data.rar (Supplementary data for computational experiments of SANA)]]
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**SANA**
protein **S**tructure **A**lignment by **N**eighborhood **A**lignment
protein **S**tructure **A**lignment by **N**eighborhood **A**lignment
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protein Structure Alignment by Neighborhood Alignment
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SANA
protein Structure Alignment by Neighborhood Alignment
**Method**
SANA is an algorithm for the alignment of two proteins. Specifically, core regions in two protein structures are first
aligned by identifying connected components in a network of neighboring, geometrically compatible aligned fragment pairs (AFPs).
The initial alignments then are refined through a multi-objective optimization method. The algorithm can produce both sequential
and non-sequential alignments.
**REFERENCE**
Lin Wang,Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen. SANA: an algorithm for sequential and non-sequential protein structure alignment.
In submission.
**SOFTWARE**
This version of the program is in very preliminary stage and provided just for testing purpose. The program is still under development.
protein Structure Alignment by Neighborhood Alignment
**Method**
SANA is an algorithm for the alignment of two proteins. Specifically, core regions in two protein structures are first
aligned by identifying connected components in a network of neighboring, geometrically compatible aligned fragment pairs (AFPs).
The initial alignments then are refined through a multi-objective optimization method. The algorithm can produce both sequential
and non-sequential alignments.
**REFERENCE**
Lin Wang,Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen. SANA: an algorithm for sequential and non-sequential protein structure alignment.
In submission.
**SOFTWARE**
This version of the program is in very preliminary stage and provided just for testing purpose. The program is still under development.
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protein Structure Alignment by Neighborhood Alignment
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SANA
protein Structure Alignment by Neighborhood Alignment
protein Structure Alignment by Neighborhood Alignment
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[[http://zhangroup.aporc.org/images/files/SANA.exe SANA.exe (Windows version of Protein Structure Alignment Tool) ]]
[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]
[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]
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[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]
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[[http://zhangroup.aporc.org/images/files/Supplementary_Data.rar (Supplementary data for computational experiments of SANA)]]
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[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar (Supplementary data for computational experiments of SANA)]]
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[[http://zhangroup.aporc.org/images/files/Supplementary Data.rar Data (Supplementary data for computational experiments of SANA)]]
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[[http://zhangroup.aporc.org/images/files/Supplementary_data.rar Data (Supplementary data for computational experiments of SANA)]]
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[[http://zhangroup.aporc.org/images/files/Supplementary_data.rar (Supplementary data for computational experiments of SANA)]]
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[[http://zhangroup.aporc.org/images/files/Supplementary data.rar (Supplementary data for computational experiments of SANA)]]
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Software and Supplementary data
[[http://zhangroup.aporc.org/images/files/SANA.exe SANA (Protein Structure Alignment Tool) ]]
[[http://zhangroup.aporc.org/images/files/Supplementary data.rar Supplementary data for computational experiments of SANA]]
[[http://zhangroup.aporc.org/images/files/SANA.exe SANA (Protein Structure Alignment Tool) ]]
[[http://zhangroup.aporc.org/images/files/Supplementary data.rar Supplementary data for computational experiments of SANA]]
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[[http://zhangroup.aporc.org/images/files/SANA.exe My CV]]
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[[http://zhangroup.aporc.org/images/files/SANA.exe My CV]]
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~- [[SANA]]
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~- [[dataprocessing]]
~- [[softwares]]
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Software
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=== {{Software}} ===
~- [[links]]
~- [[dataprocessing]]
~- [[softwares]]
~- [[links]]
~- [[dataprocessing]]
~- [[softwares]]
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理学学士（山西大学）, 2004；理学硕士（武汉大学）, 2006
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B.S., 2000.9 ~ 2004.7, School of Mathematics Science, Shanxi University.
M.S., 2004.9 ~ 2006.7, School of Mathematics and Statistics, Wuhan University.
Ph.D., 2006.9 ~ Now, Academy of Mathematics & Systems Science, CAS.
Optimization problems in transportation
M.S., 2004.9 ~ 2006.7, School of Mathematics and Statistics, Wuhan University.
Ph.D., 2006.9 ~ Now, Academy of Mathematics & Systems Science, CAS.
Optimization problems in transportation
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B.S., 2000.9 ~ 2004.7, College of Mathematics Science, Shanxi University.
M.S., 2004.9 ~ 2006.7, College of Mathematics and System Sience, Shenyang Normal University.
Ph.D., 2005.9 ~ Now, Academy of Mathematics & Systems Science, CAS.
Multi-objective programming theory
Personality
Confident --"Everything is possible,impossible is Nothing."
Industrious --"Just doing it is the only way to your goal"
Creative --"My fantasy is what I havent known"
Cooperative --"more friends,more ways"
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中国科学院数学与系统科学研究院博士研究生
理学学士（山西大学）, 2004；理学硕士（武汉大学）, 1993
Ph.D., Academy of Mathematics & Systems Science, CAS,
B.S.:Shanxi University,Taiyuan,Shanxi Province,China,
M.S.:Wuhan University,Wuhan,Hubei Province,China,
Email : wlin19821102@126.com
--------------------------------------------------------------------------------
Educational Background
B.S., 2000.9 ~ 2004.7, College of Mathematics Science, Shanxi University.
M.S., 2004.9 ~ 2006.7, College of Mathematics and System Sience, Shenyang Normal University.
Ph.D., 2005.9 ~ Now, Academy of Mathematics & Systems Science, CAS.
--------------------------------------------------------------------------------
Research Areas and Interests
Multi-objective programming theory
Operations reasearch and combinatorial optimization
Bioinformatics
--------------------------------------------------------------------------------
Hobbies
football
running
music
surffing in internet
--------------------------------------------------------------------------------
Personality
Confident --"Everything is possible,impossible is Nothing."
Industrious --"Just doing it is the only way to your goal"
Creative --"My fantasy is what I havent known"
Cooperative --"more friends,more ways"
理学学士（山西大学）, 2004；理学硕士（武汉大学）, 1993
Ph.D., Academy of Mathematics & Systems Science, CAS,
B.S.:Shanxi University,Taiyuan,Shanxi Province,China,
M.S.:Wuhan University,Wuhan,Hubei Province,China,
Email : wlin19821102@126.com
--------------------------------------------------------------------------------
Educational Background
B.S., 2000.9 ~ 2004.7, College of Mathematics Science, Shanxi University.
M.S., 2004.9 ~ 2006.7, College of Mathematics and System Sience, Shenyang Normal University.
Ph.D., 2005.9 ~ Now, Academy of Mathematics & Systems Science, CAS.
--------------------------------------------------------------------------------
Research Areas and Interests
Multi-objective programming theory
Operations reasearch and combinatorial optimization
Bioinformatics
--------------------------------------------------------------------------------
Hobbies
football
running
music
surffing in internet
--------------------------------------------------------------------------------
Personality
Confident --"Everything is possible,impossible is Nothing."
Industrious --"Just doing it is the only way to your goal"
Creative --"My fantasy is what I havent known"
Cooperative --"more friends,more ways"
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王林
