- No. 10631070: XiangsunZhang, Bioinformatics and Optimization (2007.1-2010.12)
- No. 11131009：XiangsunZhang, Optimization in Complex Networks and Its Applications in Systems Biology (2012.1-2016.12)
- No. 70302003: JuliangZhang, Modeling and Optimization of Supply Chain Design and Management (2004.1-2006.12)
- No. 10471141: XiangsunZhang, Research on Several Difficult Bioinformatics Problems by Using OR Methodologies (2005.1-2007.12)
- No. 60503004: LingyunWu, Research on Models and Algorithms of Haplotype Inference Problem in Bioinformatics (2006.1-2008.12)
- No. 10701080: RuishengWang, Research on theory and algorithms of community detection in complex networks (2008.1-2010.12)
- No. 70671100: JuliangZhang, Joint Decision on Dynamic Pricing and Inventory in Supply Chain (2008.1-2010.12)
- No. 10801131: YongWang, Research on Optimization Models and Algorithms for Reconstructing Gene Regulatory Networks (2009.1-2011.12)
- No. 60873205: XiangsunZhang, Models and Algorithms for Mining Functional Modules and Biological Pathways from Biomolecular Networks (2009.1-2011.12)
- No. 60970091: LingyunWu, Bioinformatics Methods Based on Conditional Random Fields (2010.1-2012.12)
- No. 61171007: YongWang, Bioinformatics Study on Induced Pluripotent Stem Cell (2012.1-2015.12)
- No. 91330114: LingyunWu, Modeling and Algorithms for Dynamic Network Biomarkers Identification (2014.1-2016.12)
- No. 10711140116: XiangsunZhang, Protein Function Annotation and Prediction Based on Three Dimensional Structural and High Throughput Experimental Data (2007-2009)
- Important Direction Project: Some Important Problems in Bioinformatics (2005-2008)
- No. kjcx-yw-s7: Research on the Applications of Optimization Methods in Information Technology (2009-2011)
- Student Research Project: Application and Implement of Mathematics Tools in the Protein Structure Prediction (2004.9-2005.6)
- Bioinformatics Research (2002-2008)
- No.1092011: ZhenpingLi, Detecting Functional Modules from Biomolecular Networks (2009.1-2011.12)
- No. 20040350428: LingyunWu, Research on the Algorithm of DNA Sequencing (2004.9-2005.6)
- No. 20050380334: YongWang, E-Government System Management in the Viewpoint of Complex System (2005.9-2006.6)
- Strategic planning of the Electrical Government of China (2004-2005)
- Methodology of Strategic Planning in Electrical Government (2003-2004)
