Wiki source for HuangQiang
""<img src="images/users/qhuang.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
====Dr. Qiang Huang====
Data Analysis Scientist
3golden Company (Beijing)
Email: h510493094@qq.com
hq04405114@gmail.com
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''Job experience''
2016,5~now Data Analysis Scientist, 3golden company (Beijing)
''Education Background''
2014,8~2016,4 Postdoc, Department of Systems Biology, Department of Biomedical Informatics, Columbia University.
2009,9~2014,7 Phd student, Institute of Applied Mathematics, Academy of Mathematics & Systems Science, Chinese Academy of Sciences, Operation Research.
2005,9~2009,7 Bachelor student, China University of Geosciences, mathematics and applied mathematics.
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''Research Areas''
Undirected Graphical Models.
Bayes Networks.
Hidden Markov Models.
Algorithms.
Conditional Random Fields and its applications in bioinformatics.
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''Award''
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''Interests''
Computer Language: java, R, Matlab, python
Computer Software: Photoshop, Flash
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''Publications and Book''
~1) **Qiang Huang**, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://bioinformatics.oxfordjournals.org/content/early/2011/09/16/bioinformatics.btr524.abstract An Efficient Network Querying Method Based on Conditional Random Fields.]] **---//Bioinformatics//, doi:10.1093/bioinformatics/btr524, 2011.
~1) Jiguang Wang, **Qiang Huang**, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, 39(13):e87, 2011.
~1) **Qiang Huang**, Ling-Yun Wu, Ji-Bin Qu, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033177 Analyzing Time-Course Gene Expression Data Using Profile-State Hidden Markov Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 351-355.
~1) Chen Chen, Jun-Fei Zhao, **Qiang Huang**, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033181 Inferring Domain-Domain Interactions Using an Extended Parsimony Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 385-389.
~1) Chen Chen, Jun-Fei Zhao, **Qiang Huang**, Rui-Sheng Wang, Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/6/S1/S7 Inferring domain-domain interactions from protein-protein interactions in the complex network conformation.]] **--- //BMC Systems Biology//, 2012, 6(Suppl 1):S7.
~1) **Qiang Huang**, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://www.aporc.org/ISB/2012/Proceedings/Papers/ISB2012F38.pdf CNetA: Network alignment by combing biological and topological features.]]**--- 2012 IEEE International Conference on Systems Biology (ISB), pp. 220-225. (Best paper)
~1) Ying Wang, Xiaowei Chen, Zhi-Ping Liu, **Qiang Huang**, Yong Wang, Derong Xu, Xiang-Sun Zhang, Runsheng Chen and Luonan Chen. ---**[[http://pubs.rsc.org/en/content/articlelanding/2012/mb/c2mb25292a/unauth De novo prediction of RNA-protein interactions from sequence information.]]**--- // Mol. BioSyst.//, DOI: 10.1039/c2mb25292a, 2013.
~1) **Qiang Huang**, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang. ---**[[http://www.ncbi.nlm.nih.gov/pubmed/23237213 GOMA: functional enrichment analysis tool based on GO modules.]]**--- //Chin J Cancer//, 32(4):195-204, 2013.
~1) **Qiang Huang**, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/qc/1752-0509/7/S2/S6 Corbi: A new R package for biological network alignment and querying.]] **---//BMC Systems Biology//, 2013, 7(Suppl 2):S6.
~1) Xu Y, Ding J, **Huang Q**, Nai-Yang D. ---**[[http://www.ncbi.nlm.nih.gov/pubmed/22789108 Prediction of Protein Methylation Sites Using Conditional Random Field.]]**--- //Protein and Peptide Letters//, 2013, 20(1): 71-77.
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''Hobbies''
Reading
sports
tourism
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''Links''
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[[http://zhangroup.aporc.org/HomePage]]
[[http://app.aporc.org/CNetQ/]]
[[http://app.aporc.org/CNetA/]]
[[http://app.aporc.org/NOA/]]
[[http://aloft.ctex.org/]]
[[http://aloft.ctex.org/wiki/R%20Packages]]
[[http://zhaojunfei.net/]]
[[http://scholar.google.com/citations?hl=en&user=KE8QY9wAAAAJ&sortby=pubdate&view_op=list_works&gmla=AJsN-F6GWUveFaXCIbdLlo9g95567xWpAr0eNMQfsuFHQio2BEWvmU_RzcixMYdKYEhQKoRWMVk1TKy41FetJ8yxp82U20c1XpxLgSzPBNhVieiem_SGC3odPxpd9V10a6Yj6Mn6QDN1 Google Scholar]]
====Dr. Qiang Huang====
Data Analysis Scientist
3golden Company (Beijing)
Email: h510493094@qq.com
hq04405114@gmail.com
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
''Job experience''
2016,5~now Data Analysis Scientist, 3golden company (Beijing)
''Education Background''
2014,8~2016,4 Postdoc, Department of Systems Biology, Department of Biomedical Informatics, Columbia University.
2009,9~2014,7 Phd student, Institute of Applied Mathematics, Academy of Mathematics & Systems Science, Chinese Academy of Sciences, Operation Research.
2005,9~2009,7 Bachelor student, China University of Geosciences, mathematics and applied mathematics.
--------------------------------------------------------------------------------
''Research Areas''
Undirected Graphical Models.
Bayes Networks.
Hidden Markov Models.
Algorithms.
Conditional Random Fields and its applications in bioinformatics.
--------------------------------------------------------------------------------
''Award''
--------------------------------------------------------------------------------
''Interests''
Computer Language: java, R, Matlab, python
Computer Software: Photoshop, Flash
--------------------------------------------------------------------------------
''Publications and Book''
~1) **Qiang Huang**, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://bioinformatics.oxfordjournals.org/content/early/2011/09/16/bioinformatics.btr524.abstract An Efficient Network Querying Method Based on Conditional Random Fields.]] **---//Bioinformatics//, doi:10.1093/bioinformatics/btr524, 2011.
~1) Jiguang Wang, **Qiang Huang**, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, 39(13):e87, 2011.
~1) **Qiang Huang**, Ling-Yun Wu, Ji-Bin Qu, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033177 Analyzing Time-Course Gene Expression Data Using Profile-State Hidden Markov Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 351-355.
~1) Chen Chen, Jun-Fei Zhao, **Qiang Huang**, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033181 Inferring Domain-Domain Interactions Using an Extended Parsimony Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 385-389.
~1) Chen Chen, Jun-Fei Zhao, **Qiang Huang**, Rui-Sheng Wang, Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/6/S1/S7 Inferring domain-domain interactions from protein-protein interactions in the complex network conformation.]] **--- //BMC Systems Biology//, 2012, 6(Suppl 1):S7.
~1) **Qiang Huang**, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://www.aporc.org/ISB/2012/Proceedings/Papers/ISB2012F38.pdf CNetA: Network alignment by combing biological and topological features.]]**--- 2012 IEEE International Conference on Systems Biology (ISB), pp. 220-225. (Best paper)
~1) Ying Wang, Xiaowei Chen, Zhi-Ping Liu, **Qiang Huang**, Yong Wang, Derong Xu, Xiang-Sun Zhang, Runsheng Chen and Luonan Chen. ---**[[http://pubs.rsc.org/en/content/articlelanding/2012/mb/c2mb25292a/unauth De novo prediction of RNA-protein interactions from sequence information.]]**--- // Mol. BioSyst.//, DOI: 10.1039/c2mb25292a, 2013.
~1) **Qiang Huang**, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang. ---**[[http://www.ncbi.nlm.nih.gov/pubmed/23237213 GOMA: functional enrichment analysis tool based on GO modules.]]**--- //Chin J Cancer//, 32(4):195-204, 2013.
~1) **Qiang Huang**, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/qc/1752-0509/7/S2/S6 Corbi: A new R package for biological network alignment and querying.]] **---//BMC Systems Biology//, 2013, 7(Suppl 2):S6.
~1) Xu Y, Ding J, **Huang Q**, Nai-Yang D. ---**[[http://www.ncbi.nlm.nih.gov/pubmed/22789108 Prediction of Protein Methylation Sites Using Conditional Random Field.]]**--- //Protein and Peptide Letters//, 2013, 20(1): 71-77.
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''Hobbies''
Reading
sports
tourism
--------------------------------------------------------------------------------
''Links''
--------------------------------------------------------------------------------
[[http://zhangroup.aporc.org/HomePage]]
[[http://app.aporc.org/CNetQ/]]
[[http://app.aporc.org/CNetA/]]
[[http://app.aporc.org/NOA/]]
[[http://aloft.ctex.org/]]
[[http://aloft.ctex.org/wiki/R%20Packages]]
[[http://zhaojunfei.net/]]
[[http://scholar.google.com/citations?hl=en&user=KE8QY9wAAAAJ&sortby=pubdate&view_op=list_works&gmla=AJsN-F6GWUveFaXCIbdLlo9g95567xWpAr0eNMQfsuFHQio2BEWvmU_RzcixMYdKYEhQKoRWMVk1TKy41FetJ8yxp82U20c1XpxLgSzPBNhVieiem_SGC3odPxpd9V10a6Yj6Mn6QDN1 Google Scholar]]
