Dr. Zhi-Ping Liu
刘治平
Key Laboratory of Systems Biology
Shanghai Institutes for Biological Sciences
Chinese Academy of Sciences
Tel: 86-21-5497-2919
Fax: 86-10-5497-2551
Email: zpliu@sibs.ac.cn
Address: No.500 Caobao Road, Shanghai 200233, China
Zhi-Ping Liu received his B.S. and M.S. Degree of Operations Research and Statistics from Shandong University, and a Ph.D. in Operations Research and Bioinformatics from Academy of Mathematics & Systems Science, Chinese Academy of Sciences. After a postdoctoral training in Japan, he joined Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences as an Assistant Professor. Now he is an Associate Professor at Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences. His research interests are within the areas of Bioinformatics and Biostatistics, Computational Biology and Systems Biology, Graph Theory and Combinatorial Optimization, Transportation and Logistics.
Education
- B.S., 1998 ~ 2002, Shandong University, School of Mathematics;
- M.S., 2002 ~ 2005, Shandong University, School of Mathematics;
- Ph.D., 2005 ~ 2008, Chinese Academy of Sciences, Academy of Mathematics & Systems Science.
Professional Positions
- Postdoc., 2008 ~ 2010, Osaka Sangyo University, Department of Electrical Engineering and Electronics;
- Assistant Professor, 2010, Chinese Academy of Sciences, Shanghai Institutes for Biological Sciences, Key Laboratory of Systems Biology;
- Associate Professor, 2010 ~ now, Chinese Academy of Sciences, Shanghai Institutes for Biological Sciences, Key Laboratory of Systems Biology.
Research Interests
- Bioinformatics and Systems Biology
- Operations Research and Statistics
- Graph Theory and Combinatorial Optimization
Selected Publications
- Lin Wang, Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen.
Prediction of hot spots in protein interfaces using a random forest model with hybrid features.
Protein Engineering Design and Selection, DOI: 10.1093/protein/gzr066, 2012.
Abstract | Read the paper | Software and Webpage
- Xiujun Zhang, Xing-Ming Zhao, Kun He, Le Lu, Yongwei Cao, Jingdong Liu, Jin-Kao Hao, Zhi-Ping Liu and Luonan Chen.
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information.
Bioinformatics, 28:98–104, 2012.
Abstract | Read the paper | Software and Webpage
- Danning He, Zhi-Ping Liu and Luonan Chen.
Identification of dysfunctional modules and disease genes in congenital heart disease by a network-based approach.
BMC Genomics, 12:592, 2011.
Abstract | Read the paper | Software and Webpage
- Songyot Nakariyakul, Zhi-Ping Liu and Luonan Chen.
Detecting thermophilic proteins through selecting amino acid and dipeptide composition features.
Amino Acids, doi: 10.1007/s00726-011-0923-1, 2011.
Abstract | Read the paper
- Achyut Sapkota, Xiaoping Liu, Xing-Ming Zhao, Yongwei Cao, Jingdong Liu, Zhi-Ping Liu and Luonan Chen.
DIPOS: database of interacting proteins in Oryza sativa.
Molecular Biosystems, 7:2615-2621, 2011.
Abstract | Read the paper | Software and Webpage
- Jiguang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen and Xiang-Sun Zhang.
NOA: a novel Network Ontology Analysis method.
Nucleic Acids Research, 39(13):e87, 2011.
Abstract | Read the paper | Software and Webpage
- Huarong Zhou, Shigeru Saito, Guanying Piao, Zhi-Ping Liu, Jiguang Wang, Katsuhisa Horimoto and Luonan Chen.
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression.
BMC Systems Biology, 5(Suppl 1):S16, 2011.
Abstract | Read the paper
- Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Weiming Xia and Luonan Chen.
Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients.
Molecular Biosystems, 7(5):1441-1452, 2011.
Abstract | Read the paper | Software and Webpage
- Yue-Feng Shen, Bo Li and Zhi-Ping Liu.
Protein structure alignment based on internal coordinates.
Interdisciplinary Sciences, 2(4):308-319, 2010.
Abstract | Read the paper | Software and Webpage | PDF
- Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang and Luonan Chen.
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains.
BMC Systems Biology, 4(Suppl 2):S11, 2010.
Abstract | Read the paper
- Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang and Luonan Chen.
Prediction of protein-RNA binding sites by a random forest method with combined features.
Bioinformatics, 26(13):1616-1622, 2010.
Abstract | Read the paper | Software and Webpage
- Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang and Luonan Chen.
Bridging protein local structures and protein functions.
Amino Acids, 35(3): 627-650, 2008.
Abstract | Read the paper | PDF
- Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang and Luonan Chen.
Protein cavity clustering based on community structure of pocket similarity network.
International Journal of Bioinformatics Research and Applications, 4(4), pp.445–460, 2008.
Abstract | Read the paper | PDF
- Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang and Luonan Chen.
Analysis of protein surface patterns by pocket similarity network.
Protein and Peptide Letters, 15:448-455, 2008.
Abstract | Read the paper | PDF
- Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen and Xiang-Sun Zhang.
Predicting Gene Ontology functions from protein's regional surface structures.
BMC Bioinformatics, 8:475, 2007.
Abstract | Read the paper | Software and Webpage
- Full list of paper in Bioinformatics and Systems Biology can be found in PubMed
Hobbies
- Traditional Chinese painting
- Calligraphy
- Movie
