Revision history for XianwenRen


Revision [8435]

Last edited on 2021-06-21 12:06:36 by XianwenRen
Additions:
===[[https://scholar.google.com/citations?user=le3TZVUAAAAJ&hl=en Please visit Google Scholar for my publication list]]===
Deletions:
====[[http://biopic.pku.edu.cn BIOPIC, Peking University（北京大学生物医学前沿创新中心）]]====
~- [[https://sites.google.com/site/renxwise/ My Google site]]
==**First and corresponding author publications**==
~1) **Xianwen Ren***, Boxi Kang and Zemin Zhang*. ---**[[https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1593-z Understanding tumor ecosystems by single-cell sequencing: promises and limitations]]***--- Genome Biology. 2018,19:211 DOI:10.1186/s13059-018-1593-z.
~1) Siyu Zhou, **Xianwen Ren***, Jian Yang* and Qi Jin*. ---**[[https://doi.org/10.3389/fmicb.2018.02762 Evaluating the Value of Defensins for Diagnosing Secondary Bacterial Infections in Influenza-Infected Patients]]***--- Front. Microbiol., 20 November 2018 DOI:10.3389/fmicb.2018.02762
~1) **Xianwen Ren**(co-first), Hua Fu and Qi Jin. ---**[[http://www.biomedcentral.com/1755-8794/8/78 Integrating heterogeneous genomic data to accurately identify disease subtypes]]**--- BMC Med Genomics. 2015, 8:78 DOI:10.1186/s12920-015-0154-5.
~1) **Xianwen Ren** and Qi Jin. ---**[[http://bfg.oxfordjournals.org/content/early/2015/10/01/bfgp.elv039.abstract Safe sequencing depth to estimate the intra-host heterogeneity of viruses]]**--- Brief Funct Genomics. 2015. DOI:10.1093/bfgp/elv039
~1) **Xianwen Ren**(co-first), Yongfeng, Hu, Fan Yang, Yan Xiao, Li Li, Jie Dong, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(14)00078-0/abstract Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections]]**--- Clin Microbiol Infec. 21(3):290.e1–290.e4, 2015.http://dx.doi.org/10.1016/j.cmi.2014.10.016
~1) **Xianwen Ren**. ---**[[http://www.tandfonline.com/doi/abs/10.4161/viru.26211 Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, 4(6):437-438.
~1) **Xianwen Ren**(co-first), Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/pdfs/13-0664.pdf Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis, 19(11):1881-1884, 2013.
~1) **Xianwen Ren**(co-first), Yong Wang, Xiang-Sun Zhang, Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/14/e143.abstract iPcc: a novel feature extraction method for accurate disease class discovery and prediction]]**--- Nucleic Acids Research, 41(14):e143, 2013; doi: 10.1093/nar/gkt343.
~1) **Xianwen Ren**(co-first), Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/4/e53 ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, 41(4): e53, 2013. [[http://doc.aporc.org/wiki/EllipsoidFN software]]
~1) **Xianwen Ren**(co-first), Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0051188 Evaluating de Bruijn graph assemblers on 454 transcriptomic data]]**--- PLoS One, 7(12): e51188, 2012.
~1) **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/13/70 A unified computational model for revealing and predicting subtle subtypes of cancers]]**--- BMC Bioinformatics 13:70, 2012.
~1) **Xianwen Ren**(co-first), Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/12/409 Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation]]**--- BMC Bioinformatics 12:409, 2011.
~1) **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**[[http://pubs.rsc.org/en/content/articlelanding/2011/mb/c1mb05018d The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method]]**--- Mol Biosyst. 2011, 7(6):2048-2054.
~1) **Xianwen Ren**, Xiaobo Zhou, Ling-Yun Wu and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- BMC Systems Biology, 4:72, 2010.
~1) **Xianwen Ren** and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**--- Journal of Systems Science and Complexity, 23(5), 971-977, 2010.
~1) **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**[[http://www.aporc.org/LNOR/12/ An Optimization Model for Fuzzy Binary Clustering]]**--- The Ninth International Symposium, ISORA'10, Chengdu-Jiuzhaigou, China, August 19-23, 2010
==**Co-first author publications**==
~1) Lili Ren, Donghong Yang, **Xianwen Ren**(co-first), Mingkun Li, Xinlin Mu, Qi Wang, Jie Cao, Ke Hu, Chunliang Yan, Hongwei Fan, Xiangxin Li, Yusheng Chen, Ruiqin Wang, Fucheng An, Shuchang An, Ming Luo, Ying Wang, Yan Xiao, Zichun Xiang, Yan Xiao, Li Li, Fang Huang, Qi Jin, Zhancheng Gao & Jianwei Wang. ---**[[http://www.nature.com/articles/srep41601 Genotyping of human rhinovirus in adult patients with acute respiratory infections identified predominant infections of genotype A21]]**--- Scientific Reports. (2017) 7:41601
~1) Zhe Chen, **Xianwen Ren**(co-first), Jian Yang, Jie Dong, Ying Xue, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[http://www.tandfonline.com/doi/full/10.1080/19420862.2016.1267086 An elaborate landscape of the human antibody repertoire against enterovirus 71 infection is revealed by phage display screening and deep sequencing]]**--- mAbs. (2017) 9(2):342-349.
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Li Li, Yan Xiao, Jie Dong, Lilian Sun, Yafang Zhu, Fan Yang, Xi Zhang and Qi Jin. ---**[[http://www.sciencedirect.com/science/article/pii/S1386653215007179 Rapid genome sequencing and characterization of novel avian-origin influenza A H7N9 virus directly from clinical sample by semiconductor sequencing]]**--- J Clin Virol. 2015 DOI:10.1016/j.jcv.2015.10.022
~1) Zhiqiang Wu, Li Yang, **Xianwen Ren**(co-first), Junpeng Zhang, Fan Yang, Shuyi Zhang and Qi Jin. ---**[[http://jid.oxfordjournals.org/content/early/2015/10/03/infdis.jiv476.abstract ORF8-related genetic evidence for Chinese horseshoe bats as the source of human SARS coronavirus]]**--- J Infect Dis. 213 (4): 579-583 2016.
~1) Zhiqiang Wu, Li Yang, **Xianwen Ren**(co-first), Guimei He, Junpeng Zhang, Jian Yang, Zhaohui Qian, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Fan Yang, Shuyi Zhang and Qi Jin. ---**[[http://www.nature.com/ismej/journal/vaop/ncurrent/abs/ismej2015138a.html Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases
]]**--- The ISME Journal 10(3):609-20 2016; doi:10.1038/ismej.2015.138
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Yingmei Liu, Fan Yang, Haiying Liu, Bin Cao and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(15)00370-5/abstract Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing]]**--- Clin Microbiol Infec. 21(7):713.e1–713.e4, 2015. http://dx.doi.org/10.1016/j.cmi.2015.03.006
~1) Xingye Xu, Tao Liu, **Xianwen Ren**(co-first), Bo Liu, Jian Yang, Lihong Chen, Candong Wei, Jianhua Zheng, Jie Dong, Lilian Sun, Yafang Zhu, and Qi Jin. ---**[[http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.5b00009 A proteogenomic analysis of Trichophyton rubrum aided by RNA sequencing]]**--- J. Proteome Res. 14 (5), pp 2207–2218, 2015. http://dx.doi.org/10.1021/acs.jproteome.5b00009
~1) Li Yang, Zhiqiang Wu, **Xianwen Ren**(co-first), Fan Yang, Junpeng Zhang, Guimei He, Jie Dong, Lilian Sun, Yafang Zhu, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/20/7/14-0318_article.htm MERS–Related Betacoronavirus in Vespertilio superans Bats, China]]**--- Emerg Infect Dis. 2014 July [date cited]. http://dx.doi.org/10.3201/eid2007.140318
~1) Zhiqiang Wu, Li Yang, Fan Yang, **Xianwen Ren**(co-first), Jinyong Jiang, Jie Dong, Lilian Sun, Yafang Zhu, Hongning Zhou and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/20/6/13-1022_article.htm Novel Henipa-like Virus, Mojiang Paramyxovirus, in Rats, China, 2012]]**--- Emerg Infect Dis, 2014 June [date cited]. http://dx.doi.org/10.3201/eid2006.131022
~1) Tao Liu, **Xianwen Ren**(co-first), Tengfei Xiao, Jian Yang, Xingye Xu, Jie Dong, Lilian Sun, Runsheng Chen and Qi Jin. ---**[[http://www.biomedcentral.com/1471-2164/14/931/abstract Identification and Characterisation of Non-coding Small RNAs in the Pathogenic Filamentous Fungus Trichophyton rubrum]]**--- BMC Genomics, 14:931, 2013.
~1) Yongcui Wang, **Xianwen Ren**(co-first), Chunhua Zhang, Naiyang Deng, Xiang-Sun Zhang. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519312004754 Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction]]**--- Journal of Theoretical Biology 315(21): 64-70, 2012.
~1) Zhiqiang Wu, **Xianwen Ren**(co-first), Li Yang, Yongfeng Hu, Jian Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Jiang Du, Liguo Liu, Ying Xue, Jianmin Wang, Fan Yang, Shuyi Zhang, Qi Jin. ---**[[http://jvi.asm.org/content/86/20/10999.abstract Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces]]**--- Journal of Virology 86(20): 10999-11012, 2012.
~1) Li Yang, Zhiqiang Wu, **Xianwen Ren**(co-first), Fan Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerg Infect Dis, 19(6), 2013.
==**Co-author publications**==
~1) Lei Zhang, Xin Yu, Liangtao Zheng, Yuanyuan Zhang, Yansen Li, Qiao Fang, Ranran Gao, Boxi Kang, Qiming Zhang, Julie Y. Huang, Hiroyasu Konno, Xinyi Guo, Yingjiang Ye, Songyuan Gao, Shan Wang, Xueda Hu, Xianwen Ren, Zhanlong Shen, Wenjun Ouyang & Zemin Zhang. ---**[[https://www.nature.com/articles/s41586-018-0694-x?WT.feed_name=subjects_gene-expression Lineage tracking reveals dynamic relationships of T cells in colorectal cancer]]**--- Nature, 564, pages268–272 (2018)
~1) Xinyi Guo, Yuanyuan Zhang, Liangtao Zheng, Chunhong Zheng, Jintao Song, Qiming Zhang, Boxi Kang, Zhouzerui Liu, Liang Jin, Rui Xing, Ranran Gao, Lei Zhang, Minghui Dong, Xueda Hu, **Xianwen Ren**, Dennis Kirchhoff, Helge Gottfried Roider, Tiansheng Yan and Zemin Zhang. ---**[[https://www.nature.com/articles/s41591-018-0045-3 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]]**--- Nature Medcine, 24, pages978–985 (2018).
~1) Zhiqiang Wu, Liang Lu, Jiang Du, Li Yang, **Xianwen Ren**, Bo Liu, Jinyong Jiang, Jian Yang, Jie Dong, Lilian Sun, Yafang Zhu, Yuhui Li, Dandan Zheng, Chi Zhang, Haoxiang Su, Yuting Zheng, Hongning Zhou, Guangjian Zhu, Hongying Li, Aleksei Chmura, Fan Yang, Peter Daszak, Jianwei Wang, Qiyong Liu and Qi Jin. ---**[[https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-018-0554-9 Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases]]**--- Microbiome, 6:178 (2018).
~1) Duanchen Sun, **Xianwen Ren**, Eszter Ari, Tamas Korcsmaros, Peter Csermely and Ling-Yun Wu. ---**[[https://academic.oup.com/bib/article/doi/10.1093/bib/bbx090/4079498/Discovering-cooperative-biomarkers-for Discovering cooperative biomarkers for heterogeneous complex disease diagnoses]]**--- Briefings in Bioinformatics, bbx090, https://doi.org/10.1093/bib/bbx090
~1) Jiang Du, Liang Lu, Feng Liu, Haoxiang Su, Jie Dong, Lilian Sun, Yafang Zhu, **Xianwen Ren**, Fan Yang, Fei Guo, Qiyong Liu, Zhiqiang Wu and Qi Jin. ---**[[http://www.nature.com/articles/srep34381 Distribution and characteristics of rodent picornaviruses in China]]**--- Scientific Reports. (2016) 6:34381.
~1) Jiang Du, Li Yang, **Xianwen Ren**, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Fan Yang, Shuyi Zhang, Zhiqiang Wu and Qi Jin. ---**[[http://link.springer.com/article/10.1007%2Fs11427-016-5039-0 Genetic diversity of coronaviruses in Miniopterus fuliginosus bats]]**--- Sci. China Life Sci. (2016) 59: 604.
~1) Yongfeng Hu, Yan Zhang, **Xianwen Ren**, Yingmei Liu, Yan Xiao, Li Li, Fan Yang, Haoxiang Su, Feng Liu, Haiying Liu, Bin Cao and Qi Jin. ---**[[http://www.journalofclinicalvirology.com/article/S1386-6532(16)00002-0/abstract A case report demonstrating the utility of next generation sequencing in analyzing serial samples from the lung following an infection with influenza A (H7N9) virus]]**--- J Clin Virol. 2015 DOI:10.1016/j.jcv.2015.12.013
~1) Jingxue Xin, **Xianwen Ren**, Luonan Chen and Yong Wang. ---**[[http://www.biomedcentral.com/1755-8794/8/S2/S11/abstract Identifying network biomarkers based on protein-protein interactions and expression data]]**--- BMC Medical Genomics 2015, 8(Suppl 2):S11. http://doi:10.1186/1755-8794-8-S2-S11
~1) Jian Yang, Ting Zhang, Li Guo, Yongfeng Hu, Jinlin Li, Haoxiang Su, Yan Xiao, **Xianwen Ren**, Jie Dong, Lilian Sun, Yan Xiao, Li Li, Fan Yang, Jianwei Wang, Hui Yuan and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/20/9/14-0257_article.htm Mutations of Novel Influenza A(H10N8) Virus in Chicken Eggs and MDCK Cells]]**--- Emerg Infect Dis. 2014 Sep [date cited]. http://dx.doi.org/10.3201/eid2009.140257
~1) Yan Zhang, Haiying Liu, Linghang Wang, Fan Yang, Yongfeng Hu, **Xianwen Ren**, Guojun Li, Yang Yu, Shaoxia Sun, Yufen Li, Xinchun Chen, Xingwang Li and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0067430 Comparative Study of the Cytokine/Chemokine Response in Children with Differing Disease Severity in Enterovirus 71-Induced Hand, Foot, and Mouth Disease]]**--- PLoS One, 8(6): e67430, 2013; doi:10.1371/journal.pone.0067430.
~1) Jianhua Zheng, **Xianwen Ren**, Candong Wei, Jian Yang, Yongfeng Hu, Liguo Liu, Xingye Xu, Jin Wang and Qi Jin. ---**[[http://www.mcponline.org/content/early/2013/04/24/mcp.M113.027318.abstract Analysis of the secretome and identification of novel constituents from culture filtrate of bacillus Calmette-Guerin using high-resolution mass spectrometry]]**--- Molecular & Cellular Proteomics, 24, 2013.
~1) Xia Wang, Junjie Yue, **Xianwen Ren**, Yuelan Wang, Mingfeng Tan, Beiping Li and Long Liang. ---**[[http://www.tbiomed.com/content/8/1/47 Modularity analysis based on predicted protein-protein interactions provides new insights into pathogenicity and cellular process of Escherichia coli O157:H7]]**--- Theoretical Biology and Medical Modelling 8:47, 2011.
~1) Zhong-Yuan Zhang, Tao Li, Chris Ding, **Xianwen Ren**, and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/y62142r517762595/fulltext.pdf Binary matrix factorization for analyzing gene expression data]]**--- //Data Mining and Knowledge Discovery//, 20(1), 28-52, 2010.
~1) Chung-Che Chang, Xiaobo Zhou, Jesalyn J Taylor, Wan-Ting Huang, **Xianwen Ren**, Federico Monzon, Yongdong Feng, Pulivarthi H Rao, Xin-Yan Lu, Facchetti Fabio, Susan Hilsenbeck, Chad J Creighton, Elaine S Jaffe and Ching-Ching Lau. ---**[[http://www.jhoonline.org/content/2/1/47 Genomic profiling of plasmablastic lymphoma using array comparative genomic hybridization (aCGH): revealing significant overlapping genomic lesions with diffuse large B-cell lymphoma]]**--- //Journal of Hematology & Oncology//, 2:47, 2009.
==== {{color c="green" text="Softwares of Publications:"}} ====
~-[[SourceCodeKQP4PPI]]
~-[[OTCC]]
~-[[ellipsoidFN]]
~-[[iBFE]]
~-[[SNC]]
==== {{color c="green" text="Research Interests"}} ====
~- Translational bioinformatics
~- Mathematical modeling
~- Algorithm design
~- Disease diagnosis and prognosis
==== {{color c="green" text="Hobbies"}} ====
~- History

Revision [8434]

Edited on 2021-06-21 12:00:19 by XianwenRen
Deletions:
~- [[http://www.bio.pku.edu.cn/teacher_dis_oa.php?cid=146&&teaid=577 北大生科院个人网页]]
~- [[http://biopic.pku.edu.cn/detail.aspx?id=113 BIOPIC Webpage]]
~- [[http://cancer-pku.cn/index.php/people/ Zemin Zhang’s Lab]]

Revision [8295]

Edited on 2019-06-10 21:48:39 by XianwenRen
Additions:
====[[http://biopic.pku.edu.cn BIOPIC, Peking University（北京大学生物医学前沿创新中心）]]====
Deletions:
====[[http://biopic.pku.edu.cn BIOPIC, Peking University（北京大学生物动态光学成像中心）]]====

Revision [8271]

Edited on 2019-02-13 20:10:22 by XianwenRen
Additions:
~1) Lei Zhang, Xin Yu, Liangtao Zheng, Yuanyuan Zhang, Yansen Li, Qiao Fang, Ranran Gao, Boxi Kang, Qiming Zhang, Julie Y. Huang, Hiroyasu Konno, Xinyi Guo, Yingjiang Ye, Songyuan Gao, Shan Wang, Xueda Hu, Xianwen Ren, Zhanlong Shen, Wenjun Ouyang & Zemin Zhang. ---**[[https://www.nature.com/articles/s41586-018-0694-x?WT.feed_name=subjects_gene-expression Lineage tracking reveals dynamic relationships of T cells in colorectal cancer]]**--- Nature, 564, pages268–272 (2018)
Deletions:
~1) Lei Zhang, Xin Yu, Liangtao Zheng, Yuanyuan Zhang, Yansen Li, Qiao Fang, Ranran Gao, Boxi Kang, Qiming Zhang, Julie Y. Huang, Hiroyasu Konno, Xinyi Guo, Yingjiang Ye, Songyuan Gao, Shan Wang, Xueda Hu, Xianwen Ren, Zhanlong Shen, Wenjun Ouyang & Zemin Zhang. ---**[[https://www.nature.com/articles/s41586-018-0694-x?WT.feed_name=subjects_gene-expression Lineage tracking reveals dynamic relationships of T cells in colorectal cancer]]**--- Naturevolume 564, pages268–272 (2018)

Revision [8270]

Edited on 2019-02-13 20:09:46 by XianwenRen
Additions:
~1) Lei Zhang, Xin Yu, Liangtao Zheng, Yuanyuan Zhang, Yansen Li, Qiao Fang, Ranran Gao, Boxi Kang, Qiming Zhang, Julie Y. Huang, Hiroyasu Konno, Xinyi Guo, Yingjiang Ye, Songyuan Gao, Shan Wang, Xueda Hu, Xianwen Ren, Zhanlong Shen, Wenjun Ouyang & Zemin Zhang. ---**[[https://www.nature.com/articles/s41586-018-0694-x?WT.feed_name=subjects_gene-expression Lineage tracking reveals dynamic relationships of T cells in colorectal cancer]]**--- Naturevolume 564, pages268–272 (2018)

Revision [8252]

Edited on 2018-12-04 09:30:04 by XianwenRen
Additions:
~1) **Xianwen Ren***, Boxi Kang and Zemin Zhang*. ---**[[https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1593-z Understanding tumor ecosystems by single-cell sequencing: promises and limitations]]***--- Genome Biology. 2018,19:211 DOI:10.1186/s13059-018-1593-z.
~1) Siyu Zhou, **Xianwen Ren***, Jian Yang* and Qi Jin*. ---**[[https://doi.org/10.3389/fmicb.2018.02762 Evaluating the Value of Defensins for Diagnosing Secondary Bacterial Infections in Influenza-Infected Patients]]***--- Front. Microbiol., 20 November 2018 DOI:10.3389/fmicb.2018.02762
Deletions:
~1) **Xianwen Ren**, Boxi Kang and Zemin Zhang. ---**[[https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1593-z Understanding tumor ecosystems by single-cell sequencing: promises and limitations]]***--- Genome Biology. 2018,19:211 DOI:10.1186/s13059-018-1593-z.
~1) Siyu Zhou, Xianwen Ren*, Jian Yang* and Qi Jin*. ---**[[https://doi.org/10.3389/fmicb.2018.02762 Evaluating the Value of Defensins for Diagnosing Secondary Bacterial Infections in Influenza-Infected Patients]]***--- Front. Microbiol., 20 November 2018 DOI:10.3389/fmicb.2018.02762

Revision [8251]

Edited on 2018-12-04 09:29:09 by XianwenRen
Additions:
~1) Siyu Zhou, Xianwen Ren*, Jian Yang* and Qi Jin*. ---**[[https://doi.org/10.3389/fmicb.2018.02762 Evaluating the Value of Defensins for Diagnosing Secondary Bacterial Infections in Influenza-Infected Patients]]***--- Front. Microbiol., 20 November 2018 DOI:10.3389/fmicb.2018.02762

Revision [8250]

Edited on 2018-12-04 09:11:50 by XianwenRen
Additions:
~1) **Xianwen Ren**, Boxi Kang and Zemin Zhang. ---**[[https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1593-z Understanding tumor ecosystems by single-cell sequencing: promises and limitations]]***--- Genome Biology. 2018,19:211 DOI:10.1186/s13059-018-1593-z.

Revision [8242]

Edited on 2018-10-14 21:58:25 by XianwenRen
Additions:
~1) Zhiqiang Wu, Liang Lu, Jiang Du, Li Yang, **Xianwen Ren**, Bo Liu, Jinyong Jiang, Jian Yang, Jie Dong, Lilian Sun, Yafang Zhu, Yuhui Li, Dandan Zheng, Chi Zhang, Haoxiang Su, Yuting Zheng, Hongning Zhou, Guangjian Zhu, Hongying Li, Aleksei Chmura, Fan Yang, Peter Daszak, Jianwei Wang, Qiyong Liu and Qi Jin. ---**[[https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-018-0554-9 Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases]]**--- Microbiome, 6:178 (2018).

Revision [8241]

Edited on 2018-10-14 21:54:04 by XianwenRen
Additions:
~1) Xinyi Guo, Yuanyuan Zhang, Liangtao Zheng, Chunhong Zheng, Jintao Song, Qiming Zhang, Boxi Kang, Zhouzerui Liu, Liang Jin, Rui Xing, Ranran Gao, Lei Zhang, Minghui Dong, Xueda Hu, **Xianwen Ren**, Dennis Kirchhoff, Helge Gottfried Roider, Tiansheng Yan and Zemin Zhang. ---**[[https://www.nature.com/articles/s41591-018-0045-3 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]]**--- Nature Medcine, 24, pages978–985 (2018).
Deletions:
~1) Xinyi Guo, Yuanyuan Zhang, Liangtao Zheng, Chunhong Zheng, Jintao Song, Qiming Zhang, Boxi Kang, Zhouzerui Liu, Liang Jin, Rui Xing, Ranran Gao, Lei Zhang, Minghui Dong, Xueda Hu, **Xianwen Ren**, Dennis Kirchhoff, Helge Gottfried Roider, Tiansheng Yan and Zemin Zhang. ---**[[https://www.nature.com/articles/s41591-018-0045-3 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]]**--- Nature Medcine, in press.

Revision [8174]

Edited on 2018-06-26 14:00:08 by XianwenRen
Additions:
~1) Xinyi Guo, Yuanyuan Zhang, Liangtao Zheng, Chunhong Zheng, Jintao Song, Qiming Zhang, Boxi Kang, Zhouzerui Liu, Liang Jin, Rui Xing, Ranran Gao, Lei Zhang, Minghui Dong, Xueda Hu, **Xianwen Ren**, Dennis Kirchhoff, Helge Gottfried Roider, Tiansheng Yan and Zemin Zhang. ---**[[https://www.nature.com/articles/s41591-018-0045-3 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]]**--- Nature Medcine, in press.
Deletions:
~1）Xinyi Guo, Yuanyuan Zhang, Liangtao Zheng, Chunhong Zheng, Jintao Song, Qiming Zhang, Boxi Kang, Zhouzerui Liu, Liang Jin, Rui Xing, Ranran Gao, Lei Zhang, Minghui Dong, Xueda Hu, **Xianwen Ren**, Dennis Kirchhoff, Helge Gottfried Roider, Tiansheng Yan and Zemin Zhang. ---**[[https://www.nature.com/articles/s41591-018-0045-3 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]]**--- Nature Medcine, in press.

Revision [8173]

Edited on 2018-06-26 13:59:38 by XianwenRen
Additions:
~1）Xinyi Guo, Yuanyuan Zhang, Liangtao Zheng, Chunhong Zheng, Jintao Song, Qiming Zhang, Boxi Kang, Zhouzerui Liu, Liang Jin, Rui Xing, Ranran Gao, Lei Zhang, Minghui Dong, Xueda Hu, **Xianwen Ren**, Dennis Kirchhoff, Helge Gottfried Roider, Tiansheng Yan and Zemin Zhang. ---**[[https://www.nature.com/articles/s41591-018-0045-3 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]]**--- Nature Medcine, in press.

Revision [8145]

Edited on 2018-03-25 10:10:12 by XianwenRen
Deletions:
::c::----
""<a href="http://www2.clustrmaps.com/counter/maps.php?url=http://zhangroup.aporc.org/XianwenRen" id="clustrMapsLink"><img src="http://www2.clustrmaps.com/counter/index2.php?url=http://zhangroup.aporc.org/XianwenRen" style="border:0px;" alt="Locations of visitors to this page" title="Locations of visitors to this page" id="clustrMapsImg" onerror="this.onerror=null; this.src='http://clustrmaps.com/images/clustrmaps-back-soon.jpg'; document.getElementById('clustrMapsLink').href='http://clustrmaps.com';" />
</a>""

Revision [8131]

Edited on 2018-03-08 22:02:59 by XianwenRen
Additions:
::c::----
""<a href="http://www2.clustrmaps.com/counter/maps.php?url=http://zhangroup.aporc.org/XianwenRen" id="clustrMapsLink"><img src="http://www2.clustrmaps.com/counter/index2.php?url=http://zhangroup.aporc.org/XianwenRen" style="border:0px;" alt="Locations of visitors to this page" title="Locations of visitors to this page" id="clustrMapsImg" onerror="this.onerror=null; this.src='http://clustrmaps.com/images/clustrmaps-back-soon.jpg'; document.getElementById('clustrMapsLink').href='http://clustrmaps.com';" />
</a>""

Revision [8127]

Edited on 2018-02-27 11:44:22 by XianwenRen
Additions:
~1）[发明, 已授权] ---**[[http://www2.soopat.com/Patent/201510583787?lx=FMSQ 基于宏基因组学的病毒感染检测及鉴定方法 - 申请号：201510583787.3]]**--- - 申请人：中国医学科学院病原生物学研究所 - 申请日：2015-09-14 - 主分类号：C12Q1/70(2006.01)I - 发明人：金奇;**任仙文**;杨剑;胡永峰;杨帆.
Deletions:
~1）[发明, 已授权] ---**[[http://www2.soopat.com/Patent/201510583787?lx=FMSQ 基于宏基因组学的病毒感染检测及鉴定方法 - 申请号：201510583787.3]]***--- - 申请人：中国医学科学院病原生物学研究所 - 申请日：2015-09-14 - 主分类号：C12Q1/70(2006.01)I - 发明人：金奇;**任仙文**;杨剑;胡永峰;杨帆.

Revision [8126]

Edited on 2018-02-24 11:08:07 by XianwenRen
Additions:
~1) **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**[[http://www.aporc.org/LNOR/12/ An Optimization Model for Fuzzy Binary Clustering]]**--- The Ninth International Symposium, ISORA'10, Chengdu-Jiuzhaigou, China, August 19-23, 2010

Revision [8125]

Edited on 2018-02-24 11:04:38 by XianwenRen
Additions:
~1) **Xianwen Ren**, Xiaobo Zhou, Ling-Yun Wu and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- BMC Systems Biology, 4:72, 2010.
~1) **Xianwen Ren** and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**--- Journal of Systems Science and Complexity, 23(5), 971-977, 2010.
Deletions:
~1) **Xianwen Ren**, Xiaobo Zhou, Ling-Yun Wu and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.
~1) **Xianwen Ren** and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**--- //Journal of Systems Science and Complexity//, 23(5), 971-977, 2010.

Revision [8124]

Edited on 2018-02-23 23:19:06 by XianwenRen

No Differences

Revision [8123]

Edited on 2018-02-23 23:18:46 by XianwenRen
Deletions:
======My private page======

Revision [8122]

Edited on 2018-02-23 23:18:02 by XianwenRen
Additions:
======My private page======
====[[http://biopic.pku.edu.cn BIOPIC, Peking University（北京大学生物动态光学成像中心）]]====
~- ''Name:'' Xianwen Ren （任仙文）
~- ''Birth:'' March 1983, Shuozhou, Shanxi Province (1983年3月，山西省朔州市)
~- [[https://sites.google.com/site/renxwise/ My Google site]]
~- [[http://www.bio.pku.edu.cn/teacher_dis_oa.php?cid=146&&teaid=577 北大生科院个人网页]]
~- [[http://biopic.pku.edu.cn/detail.aspx?id=113 BIOPIC Webpage]]
~- [[http://cancer-pku.cn/index.php/people/ Zemin Zhang’s Lab]]
==== {{color c="green" text=" Education （教育背景）"}} ====
=== {{color c="green" text=" Experience （工作经历）"}} ===
==== {{color c="green" text=" Honors（获得荣誉）"}}====
==== {{color c="green" text=" Publications（发表论文）"}}====
==**First and corresponding author publications**==
==**Co-first author publications**==
==**Co-author publications**==
==== {{color c="green" text=" Patents（申请专利）"}}====
~1）[发明, 已授权] ---**[[http://www2.soopat.com/Patent/201510583787?lx=FMSQ 基于宏基因组学的病毒感染检测及鉴定方法 - 申请号：201510583787.3]]***--- - 申请人：中国医学科学院病原生物学研究所 - 申请日：2015-09-14 - 主分类号：C12Q1/70(2006.01)I - 发明人：金奇;**任仙文**;杨剑;胡永峰;杨帆.
==== {{color c="green" text="Softwares of Publications:"}} ====
==== {{color c="green" text="Research Interests"}} ====
~- Translational bioinformatics
~- Mathematical modeling
~- Algorithm design
~- Disease diagnosis and prognosis
==== {{color c="green" text="Hobbies"}} ====
~- History
Deletions:
===[[http://biopic.pku.edu.cn BIOPIC, Peking University]]===
~- ''Name:'' Xianwen Ren
~- ''Birth:'' March 1983
~- [[https://sites.google.com/site/renxwise/ ''Google site'']]
~- [[http://www.bio.pku.edu.cn/teacher_dis_oa.php?cid=146&&teaid=577 ''北大生科院个人网页'']]
~- [[http://biopic.pku.edu.cn/detail.aspx?id=113 ''BIOPIC Webpage'']]
=== {{color c="green" text=" Education "}} ===
=== {{color c="green" text=" Experience "}} ===
=== {{color c="green" text=" Honors"}}===
=== {{color c="green" text=" Publications"}}===
=== {{color c="green" text="Softwares of Publications:"}} ===
=== {{color c="green" text="Research Interests"}} ===
~- Evolution
~- Pathogenesis of Infectious Diseases
~- Bioinformatics and Computational Biology
~- Network Biology and Systems Biology
=== {{color c="green" text="Hobbies"}} ===
~- Shuttlecock, Table tennis, Mountain climbing

Revision [8100]

Edited on 2018-01-15 13:37:04 by XianwenRen
Additions:
=====[[http://www.bio.pku.edu.cn/teacher_dis_oa.php?cid=146&&teaid=577 Xianwen Ren (任仙文)]]=====
~- ''Name:'' Xianwen Ren
Deletions:
=====[[http://www.bio.pku.edu.cn/teacher_dis_oa.php?cid=146&&teaid=577 Xianwen Ren]]=====
~- ''Name:'' Xianwen Ren (任仙文)

Revision [8099]

Edited on 2018-01-15 13:36:02 by XianwenRen
Additions:
~- ''Name:'' Xianwen Ren (任仙文)
Deletions:
~- ''Name:'' Xianwen Ren

Revision [8079]

Edited on 2017-12-06 22:14:02 by XianwenRen
Additions:
~1) **Xianwen Ren**. ---**[[http://www.tandfonline.com/doi/abs/10.4161/viru.26211 Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, 4(6):437-438.
Deletions:
~1) **Xianwen Ren**. ---**[[https://www.landesbioscience.com/journals/virulence/article/26211/ Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, 4(6):437-438.

Revision [8053]

Edited on 2017-08-09 09:02:26 by XianwenRen
Additions:
~1) Duanchen Sun, **Xianwen Ren**, Eszter Ari, Tamas Korcsmaros, Peter Csermely and Ling-Yun Wu. ---**[[https://academic.oup.com/bib/article/doi/10.1093/bib/bbx090/4079498/Discovering-cooperative-biomarkers-for Discovering cooperative biomarkers for heterogeneous complex disease diagnoses]]**--- Briefings in Bioinformatics, bbx090, https://doi.org/10.1093/bib/bbx090

Revision [8043]

Edited on 2017-06-22 14:17:53 by XianwenRen
Additions:
~- [[https://sites.google.com/site/renxwise/ ''Google site'']]
~- [[http://www.bio.pku.edu.cn/teacher_dis_oa.php?cid=146&&teaid=577 ''北大生科院个人网页'']]
~- [[http://biopic.pku.edu.cn/detail.aspx?id=113 ''BIOPIC Webpage'']]
Deletions:
~- ''Google site'' [[https://sites.google.com/site/renxwise/]]

Revision [8025]

Edited on 2017-04-28 10:56:27 by XianwenRen
Additions:
中国科学院数学与系统科学研究院，运筹学与控制论，博士
Deletions:
中国科学院数学与系统科学研究所，运筹学与控制论，博士

Revision [8024]

Edited on 2017-04-26 15:29:49 by XianwenRen
Additions:
康奈尔大学威尔医学院卫斯理医院，访问学生
中国医学科学院北京协和医学院病原生物学研究所, 助理研究员、副研究员
北京大学生命科学学院生物动态光学成像中心，副研究员
Deletions:
康奈尔大学威尔医学院卫斯理医院
中国医学科学院北京协和医学院病原生物学研究所
北京大学生命科学学院生物动态光学成像中心

Revision [8023]

Edited on 2017-04-26 15:28:31 by XianwenRen
Additions:
南开大学，生物科学，信息与计算科学，双学位
军事医学科学院，遗传学，硕士
中国科学院数学与系统科学研究所，运筹学与控制论，博士
康奈尔大学威尔医学院卫斯理医院
中国医学科学院北京协和医学院病原生物学研究所
~- Biodynamics Optical Imaging Center,College of Life Sciences, Peking University, 2016.09-now
北京大学生命科学学院生物动态光学成像中心
Deletions:
~- Biodynamics Optical Imaging Center,Peking University, 2016.09-now

Revision [7985]

Edited on 2017-02-14 21:01:59 by XianwenRen
Additions:
=====[[http://www.bio.pku.edu.cn/teacher_dis_oa.php?cid=146&&teaid=577 Xianwen Ren]]=====
Deletions:
=====Xianwen Ren=====

Revision [7984]

Edited on 2017-02-02 22:43:37 by XianwenRen
Additions:
~- 2014年度 中国医学科学院北京协和医学院协和新星
Deletions:
~- 2014年度 协和新星

Revision [7983]

Edited on 2017-02-02 22:36:41 by XianwenRen
Additions:
~- 2012年度 中国医学科学院北京协和医学院精神文明先进个人

Revision [7982]

Edited on 2017-02-02 22:17:11 by XianwenRen
Additions:
~- 2016年度 [[http://www.cutech.edu.cn/cn/zxgz/2016/12/1480552751669003.htm 高等学校科学研究优秀成果奖科技进步奖一等奖（排名第三）]]

Revision [7981]

Edited on 2017-02-02 22:09:13 by XianwenRen
Additions:
~1) Lili Ren, Donghong Yang, **Xianwen Ren**(co-first), Mingkun Li, Xinlin Mu, Qi Wang, Jie Cao, Ke Hu, Chunliang Yan, Hongwei Fan, Xiangxin Li, Yusheng Chen, Ruiqin Wang, Fucheng An, Shuchang An, Ming Luo, Ying Wang, Yan Xiao, Zichun Xiang, Yan Xiao, Li Li, Fang Huang, Qi Jin, Zhancheng Gao & Jianwei Wang. ---**[[http://www.nature.com/articles/srep41601 Genotyping of human rhinovirus in adult patients with acute respiratory infections identified predominant infections of genotype A21]]**--- Scientific Reports. (2017) 7:41601
Deletions:
~1) Lili Ren, Donghong Yang, **Xianwen Ren**(co-first), Mingkun Li, Xinlin Mu, Qi Wang, Jie Cao, Ke Hu, Chunliang Yan, Hongwei Fan, Xiangxin Li, Yusheng Chen, Ruiqin Wang, Fucheng An, Shuchang An, Ming Luo, Ying Wang, Yan Xiao, Zichun Xiang, Yan Xiao, Li Li, Fang Huang, Qi Jin, Zhancheng Gao & Jianwei Wang. ---**[[ Genotyping of human rhinovirus in adult patients with acute respiratory infections identified predominant infections of genotype A21]]**--- Scientific Reports. (2017) 7:41601

Revision [7980]

Edited on 2017-02-02 22:08:41 by XianwenRen
Additions:
~1) Lili Ren, Donghong Yang, **Xianwen Ren**(co-first), Mingkun Li, Xinlin Mu, Qi Wang, Jie Cao, Ke Hu, Chunliang Yan, Hongwei Fan, Xiangxin Li, Yusheng Chen, Ruiqin Wang, Fucheng An, Shuchang An, Ming Luo, Ying Wang, Yan Xiao, Zichun Xiang, Yan Xiao, Li Li, Fang Huang, Qi Jin, Zhancheng Gao & Jianwei Wang. ---**[[ Genotyping of human rhinovirus in adult patients with acute respiratory infections identified predominant infections of genotype A21]]**--- Scientific Reports. (2017) 7:41601

Revision [7979]

Edited on 2017-02-01 09:11:34 by XianwenRen
Additions:
~1) Zhe Chen, **Xianwen Ren**(co-first), Jian Yang, Jie Dong, Ying Xue, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[http://www.tandfonline.com/doi/full/10.1080/19420862.2016.1267086 An elaborate landscape of the human antibody repertoire against enterovirus 71 infection is revealed by phage display screening and deep sequencing]]**--- mAbs. (2017) 9(2):342-349.
Deletions:
~1) Zhe Chen, **Xianwen Ren**(co-first), Jian Yang, Jie Dong, Ying Xue, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[http://www.tandfonline.com/doi/full/10.1080/19420862.2016.1267086 An elaborate landscape of the human antibody repertoire against enterovirus 71 infection is revealed by phage display screening and deep sequencing]]**--- mAbs, in press.

Revision [7970]

Edited on 2016-12-09 09:37:07 by XianwenRen
Additions:
~1) Zhe Chen, **Xianwen Ren**(co-first), Jian Yang, Jie Dong, Ying Xue, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[http://www.tandfonline.com/doi/full/10.1080/19420862.2016.1267086 An elaborate landscape of the human antibody repertoire against enterovirus 71 infection is revealed by phage display screening and deep sequencing]]**--- mAbs, in press.

Revision [7958]

Edited on 2016-10-30 08:54:30 by XianwenRen
Additions:
=== {{color c="green" text=" Experience "}} ===
~- The Methodist Hospital Research Institute, Weill Cornell Medical College, 2008.06-2009.06
~- Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, 2010.08-2016.08
~- Biodynamics Optical Imaging Center,Peking University, 2016.09-now
Deletions:
~- Visiting scholar The Methodist Hospital Research Institute, 2008.6-2009.7

Revision [7957]

Edited on 2016-10-30 08:31:25 by XianwenRen
Additions:
===[[http://biopic.pku.edu.cn BIOPIC, Peking University]]===
Deletions:
===[[http://www.ipbcams.ac.cn Institute of Pathogen Biology, Chinese Academy of Medical Sciences]]===

Revision [7956]

Edited on 2016-10-10 21:37:39 by XianwenRen
Deletions:
~-[[QRidgeWalker QRidge]]

Revision [7955]

Edited on 2016-10-10 21:37:03 by XianwenRen
Additions:
~1) Jiang Du, Liang Lu, Feng Liu, Haoxiang Su, Jie Dong, Lilian Sun, Yafang Zhu, **Xianwen Ren**, Fan Yang, Fei Guo, Qiyong Liu, Zhiqiang Wu and Qi Jin. ---**[[http://www.nature.com/articles/srep34381 Distribution and characteristics of rodent picornaviruses in China]]**--- Scientific Reports. (2016) 6:34381.
Deletions:
~1) Jiang Du, Liang Lu, Feng Liu, Haoxiang Su, Jie Dong, Lilian Sun, Yafang Zhu, **Xianwen Ren**, Fan Yang, Fei Guo, Qiyong Liu, Zhiqiang Wu and Qi Jin. ---**[http://www.nature.com/articles/srep34381 Distribution and characteristics of rodent picornaviruses in China]]**--- Scientific Reports. (2016) 6:34381.

Revision [7954]

Edited on 2016-10-10 21:35:07 by XianwenRen
Additions:
~1) Jiang Du, Liang Lu, Feng Liu, Haoxiang Su, Jie Dong, Lilian Sun, Yafang Zhu, **Xianwen Ren**, Fan Yang, Fei Guo, Qiyong Liu, Zhiqiang Wu and Qi Jin. ---**[http://www.nature.com/articles/srep34381 Distribution and characteristics of rodent picornaviruses in China]]**--- Scientific Reports. (2016) 6:34381.

Revision [7892]

Edited on 2016-07-03 20:03:15 by XianwenRen
Additions:
~1) Jiang Du, Li Yang, **Xianwen Ren**, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Fan Yang, Shuyi Zhang, Zhiqiang Wu and Qi Jin. ---**[[http://link.springer.com/article/10.1007%2Fs11427-016-5039-0 Genetic diversity of coronaviruses in Miniopterus fuliginosus bats]]**--- Sci. China Life Sci. (2016) 59: 604.

Revision [7841]

Edited on 2016-05-07 21:06:37 by XianwenRen
Additions:
~1) Zhiqiang Wu, Li Yang, **Xianwen Ren**(co-first), Junpeng Zhang, Fan Yang, Shuyi Zhang and Qi Jin. ---**[[http://jid.oxfordjournals.org/content/early/2015/10/03/infdis.jiv476.abstract ORF8-related genetic evidence for Chinese horseshoe bats as the source of human SARS coronavirus]]**--- J Infect Dis. 213 (4): 579-583 2016.
Deletions:
~1) Zhiqiang Wu, Li Yang, **Xianwen Ren**(co-first), Junpeng Zhang, Fan Yang, Shuyi Zhang and Qi Jin. ---**[[http://jid.oxfordjournals.org/content/early/2015/10/03/infdis.jiv476.abstract ORF8-related genetic evidence for Chinese horseshoe bats as the source of human SARS coronavirus]]**--- J Infect Dis. 2015. DOI:10.1093/infdis/jiv476

Revision [7840]

Edited on 2016-05-07 21:05:26 by XianwenRen
Additions:
]]**--- The ISME Journal 10(3):609-20 2016; doi:10.1038/ismej.2015.138
Deletions:
]]**--- The ISME Journal advance online publication, 11 August 2015; doi:10.1038/ismej.2015.138

Revision [7815]

Edited on 2016-03-19 07:56:48 by XianwenRen
Additions:
~- Visiting scholar The Methodist Hospital Research Institute, 2008.6-2009.7
=== {{color c="green" text=" Honors"}}===
~- 2014年度 协和新星
~- 2013年度 中国医学科学院病原生物学研究所先进个人

Revision [7814]

Edited on 2016-03-19 00:31:18 by XianwenRen
Additions:
~1) Yongfeng Hu, Yan Zhang, **Xianwen Ren**, Yingmei Liu, Yan Xiao, Li Li, Fan Yang, Haoxiang Su, Feng Liu, Haiying Liu, Bin Cao and Qi Jin. ---**[[http://www.journalofclinicalvirology.com/article/S1386-6532(16)00002-0/abstract A case report demonstrating the utility of next generation sequencing in analyzing serial samples from the lung following an infection with influenza A (H7N9) virus]]**--- J Clin Virol. 2015 DOI:10.1016/j.jcv.2015.12.013
Deletions:
~1) Yongfeng Hu, Yan Zhang, Xianwen Ren, Yingmei Liu, Yan Xiao, Li Li, Fan Yang, Haoxiang Su, Feng Liu, Haiying Liu, Bin Cao and Qi Jin. ---**[[http://www.journalofclinicalvirology.com/article/S1386-6532(16)00002-0/abstract A case report demonstrating the utility of next generation sequencing in analyzing serial samples from the lung following an infection with influenza A (H7N9) virus]]**--- J Clin Virol. 2015 DOI:10.1016/j.jcv.2015.12.013

Revision [7813]

Edited on 2016-03-14 11:15:05 by XianwenRen
Additions:
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Yingmei Liu, Fan Yang, Haiying Liu, Bin Cao and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(15)00370-5/abstract Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing]]**--- Clin Microbiol Infec. 21(7):713.e1–713.e4, 2015. http://dx.doi.org/10.1016/j.cmi.2015.03.006
Deletions:
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Ying Liu, Fan Yang, Bin Cao and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(15)00370-5/abstract Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing]]**--- Clin Microbiol Infec. 21(7):713.e1–713.e4, 2015. http://dx.doi.org/10.1016/j.cmi.2015.03.006

Revision [7795]

Edited on 2016-02-23 15:46:33 by XianwenRen
Additions:
~1) Yongfeng Hu, Yan Zhang, Xianwen Ren, Yingmei Liu, Yan Xiao, Li Li, Fan Yang, Haoxiang Su, Feng Liu, Haiying Liu, Bin Cao and Qi Jin. ---**[[http://www.journalofclinicalvirology.com/article/S1386-6532(16)00002-0/abstract A case report demonstrating the utility of next generation sequencing in analyzing serial samples from the lung following an infection with influenza A (H7N9) virus]]**--- J Clin Virol. 2015 DOI:10.1016/j.jcv.2015.12.013
Deletions:
~1)

Revision [7794]

Edited on 2016-02-23 15:43:39 by XianwenRen
Additions:
~1)

Revision [7734]

Edited on 2015-11-30 13:27:13 by XianwenRen
Additions:
~1) **Xianwen Ren**(co-first), Hua Fu and Qi Jin. ---**[[http://www.biomedcentral.com/1755-8794/8/78 Integrating heterogeneous genomic data to accurately identify disease subtypes]]**--- BMC Med Genomics. 2015, 8:78 DOI:10.1186/s12920-015-0154-5.
Deletions:
~1) **Xianwen Ren**, Hua Fu and Qi Jin. ---**[[http://www.biomedcentral.com/1755-8794/8/78 Integrating heterogeneous genomic data to accurately identify disease subtypes]]**--- BMC Med Genomics. 2015, 8:78 DOI:10.1186/s12920-015-0154-5.

Revision [7730]

Edited on 2015-11-20 21:52:35 by XianwenRen
Additions:
~1) **Xianwen Ren**, Hua Fu and Qi Jin. ---**[[http://www.biomedcentral.com/1755-8794/8/78 Integrating heterogeneous genomic data to accurately identify disease subtypes]]**--- BMC Med Genomics. 2015, 8:78 DOI:10.1186/s12920-015-0154-5.
Deletions:
~1) **Xianwen Ren**, Hua Fu and Qi Jin. ---**[[ Integrating heterogeneous genomic data to accurately identify disease subtypes]]**--- BMC Med Genomics. 2015. In press.

Revision [7729]

Edited on 2015-11-20 10:49:14 by XianwenRen
Additions:
~1) **Xianwen Ren**, Hua Fu and Qi Jin. ---**[[ Integrating heterogeneous genomic data to accurately identify disease subtypes]]**--- BMC Med Genomics. 2015. In press.

Revision [7728]

Edited on 2015-11-20 10:45:52 by XianwenRen
Additions:
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Li Li, Yan Xiao, Jie Dong, Lilian Sun, Yafang Zhu, Fan Yang, Xi Zhang and Qi Jin. ---**[[http://www.sciencedirect.com/science/article/pii/S1386653215007179 Rapid genome sequencing and characterization of novel avian-origin influenza A H7N9 virus directly from clinical sample by semiconductor sequencing]]**--- J Clin Virol. 2015 DOI:10.1016/j.jcv.2015.10.022

Revision [7689]

Edited on 2015-10-05 08:24:44 by XianwenRen
Additions:
~1) Zhiqiang Wu, Li Yang, **Xianwen Ren**(co-first), Junpeng Zhang, Fan Yang, Shuyi Zhang and Qi Jin. ---**[[http://jid.oxfordjournals.org/content/early/2015/10/03/infdis.jiv476.abstract ORF8-related genetic evidence for Chinese horseshoe bats as the source of human SARS coronavirus]]**--- J Infect Dis. 2015. DOI:10.1093/infdis/jiv476
~1) **Xianwen Ren** and Qi Jin. ---**[[http://bfg.oxfordjournals.org/content/early/2015/10/01/bfgp.elv039.abstract Safe sequencing depth to estimate the intra-host heterogeneity of viruses]]**--- Brief Funct Genomics. 2015. DOI:10.1093/bfgp/elv039
Deletions:
~1) **Xianwen Ren** and Qi Jin. ---**[[http://bfg.oxfordjournals.org/content/early/2015/10/01/bfgp.elv039.abstract Safe sequencing depth to estimate the intra-host heterogeneity of viruses]]**--- Brief Funct Genomics. DOI:10.1093/bfgp/elv039

Revision [7688]

Edited on 2015-10-02 14:23:46 by XianwenRen
Additions:
~1) **Xianwen Ren** and Qi Jin. ---**[[http://bfg.oxfordjournals.org/content/early/2015/10/01/bfgp.elv039.abstract Safe sequencing depth to estimate the intra-host heterogeneity of viruses]]**--- Brief Funct Genomics. DOI:10.1093/bfgp/elv039
Deletions:
~1) **Xianwen Ren** and Qi Jin. ---**[[ Safe sequencing depth to estimate the intra-host heterogeneity of viruses]]**--- Brief Funct Genomics. In press. doi:10.1093/bfgp/elv039

Revision [7684]

Edited on 2015-09-10 10:39:59 by XianwenRen
Additions:
~1) **Xianwen Ren** and Qi Jin. ---**[[ Safe sequencing depth to estimate the intra-host heterogeneity of viruses]]**--- Brief Funct Genomics. In press. doi:10.1093/bfgp/elv039

Revision [7649]

Edited on 2015-09-07 15:31:28 by XianwenRen
Additions:
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Ying Liu, Fan Yang, Bin Cao and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(15)00370-5/abstract Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing]]**--- Clin Microbiol Infec. 21(7):713.e1–713.e4, 2015. http://dx.doi.org/10.1016/j.cmi.2015.03.006
Deletions:
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Ying Liu, Fan Yang, Bin Cao and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(15)00370-5/abstract Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing]]**--- Clin Microbiol Infec. In press. http://dx.doi.org/10.1016/j.cmi.2015.03.006

Revision [7639]

Edited on 2015-08-13 09:36:04 by XianwenRen
Additions:
~1) Zhiqiang Wu, Li Yang, **Xianwen Ren**(co-first), Guimei He, Junpeng Zhang, Jian Yang, Zhaohui Qian, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Fan Yang, Shuyi Zhang and Qi Jin. ---**[[http://www.nature.com/ismej/journal/vaop/ncurrent/abs/ismej2015138a.html Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases
]]**--- The ISME Journal advance online publication, 11 August 2015; doi:10.1038/ismej.2015.138

Revision [7509]

Edited on 2015-05-11 10:17:23 by XianwenRen
Additions:
~1) Xingye Xu, Tao Liu, **Xianwen Ren**(co-first), Bo Liu, Jian Yang, Lihong Chen, Candong Wei, Jianhua Zheng, Jie Dong, Lilian Sun, Yafang Zhu, and Qi Jin. ---**[[http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.5b00009 A proteogenomic analysis of Trichophyton rubrum aided by RNA sequencing]]**--- J. Proteome Res. 14 (5), pp 2207–2218, 2015. http://dx.doi.org/10.1021/acs.jproteome.5b00009
Deletions:
~1) Xingye Xu, Tao Liu, **Xianwen Ren**(co-first), Bo Liu, Jian Yang, Lihong Chen, Candong Wei, Jianhua Zheng, Jie Dong, Lilian Sun, Yafang Zhu, and Qi Jin. ---**[[http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.5b00009 A proteogenomic analysis of Trichophyton rubrum aided by RNA sequencing]]**--- J. Proteome Res. http://dx.doi.org/10.1021/acs.jproteome.5b00009

Revision [7507]

Edited on 2015-05-08 23:15:22 by XianwenRen
Additions:
~1) Jingxue Xin, **Xianwen Ren**, Luonan Chen and Yong Wang. ---**[[http://www.biomedcentral.com/1755-8794/8/S2/S11/abstract Identifying network biomarkers based on protein-protein interactions and expression data]]**--- BMC Medical Genomics 2015, 8(Suppl 2):S11. http://doi:10.1186/1755-8794-8-S2-S11

Revision [7506]

Edited on 2015-05-08 09:35:30 by XianwenRen
Additions:
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Ying Liu, Fan Yang, Bin Cao and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(15)00370-5/abstract Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing]]**--- Clin Microbiol Infec. In press. http://dx.doi.org/10.1016/j.cmi.2015.03.006
Deletions:
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Fan Yang, and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(15)00370-5/abstract Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing]]**--- Clin Microbiol Infec. In press. http://dx.doi.org/10.1016/j.cmi.2015.03.006

Revision [7498]

Edited on 2015-04-30 15:40:33 by XianwenRen
Additions:
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Fan Yang, and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(15)00370-5/abstract Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing]]**--- Clin Microbiol Infec. In press. http://dx.doi.org/10.1016/j.cmi.2015.03.006
Deletions:
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Fan Yang, and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(15)00370-5/abstract Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing]]**--- Clin Microbiol Infec. In press.

Revision [7497]

Edited on 2015-04-30 15:39:50 by XianwenRen
Additions:
~1) Yongfeng Hu, **Xianwen Ren**(co-first), Fan Yang, and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(15)00370-5/abstract Serial high-resolution analysis of blood virome and host cytokines expression profile of a patient with fatal H7N9 infection by massively parallel RNA sequencing]]**--- Clin Microbiol Infec. In press.

Revision [7480]

Edited on 2015-04-17 12:04:58 by XianwenRen
Additions:
~1) Xingye Xu, Tao Liu, **Xianwen Ren**(co-first), Bo Liu, Jian Yang, Lihong Chen, Candong Wei, Jianhua Zheng, Jie Dong, Lilian Sun, Yafang Zhu, and Qi Jin. ---**[[http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.5b00009 A proteogenomic analysis of Trichophyton rubrum aided by RNA sequencing]]**--- J. Proteome Res. http://dx.doi.org/10.1021/acs.jproteome.5b00009
Deletions:
~1) Xingye Xu, Tao Liu, **Xianwen Ren**(co-first), Bo Liu, Jian Yang, Lihong Chen, Candong Wei, Jianhua Zheng, Jie Dong, Lilian Sun, Yafang Zhu, and Qi Jin. ---**[[http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.5b00009 A proteogenomic analysis of Trichophyton rubrum aided by RNA sequencing]]**--- J. Proteome Res. http://dx.doi.org/ 10.1021/acs.jproteome.5b00009

Revision [7479]

Edited on 2015-04-17 12:04:46 by XianwenRen
Additions:
~1) Xingye Xu, Tao Liu, **Xianwen Ren**(co-first), Bo Liu, Jian Yang, Lihong Chen, Candong Wei, Jianhua Zheng, Jie Dong, Lilian Sun, Yafang Zhu, and Qi Jin. ---**[[http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.5b00009 A proteogenomic analysis of Trichophyton rubrum aided by RNA sequencing]]**--- J. Proteome Res. http://dx.doi.org/ 10.1021/acs.jproteome.5b00009
Deletions:
~1) Xingye Xu, Tao Liu, **Xianwen Ren**(co-first), Bo Liu, Jian Yang, Lihong Chen, Candong Wei, Jianhua Zheng, Jie Dong, Lilian Sun, Yafang Zhu, and Qi Jin. ---**[[http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.5b00009 A proteogenomic analysis of Trichophyton rubrum aided by RNA sequencing]]**--- J. Proteome Res. DOI: 10.1021/acs.jproteome.5b00009

Revision [7478]

Edited on 2015-04-17 12:04:02 by XianwenRen
Additions:
~1) Xingye Xu, Tao Liu, **Xianwen Ren**(co-first), Bo Liu, Jian Yang, Lihong Chen, Candong Wei, Jianhua Zheng, Jie Dong, Lilian Sun, Yafang Zhu, and Qi Jin. ---**[[http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.5b00009 A proteogenomic analysis of Trichophyton rubrum aided by RNA sequencing]]**--- J. Proteome Res. DOI: 10.1021/acs.jproteome.5b00009

Revision [7477]

Edited on 2015-04-07 14:26:42 by XianwenRen
Additions:
~1) **Xianwen Ren**(co-first), Yongfeng, Hu, Fan Yang, Yan Xiao, Li Li, Jie Dong, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[http://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(14)00078-0/abstract Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections]]**--- Clin Microbiol Infec. 21(3):290.e1–290.e4, 2015.http://dx.doi.org/10.1016/j.cmi.2014.10.016
Deletions:
~1) **Xianwen Ren**(co-first), Yongfeng, Hu, Fan Yang, Yan Xiao, Li Li, Jie Dong, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[ Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections]]**--- Clin Microbiol Infec. 21(3):290.e1–290.e4, 2015.j.cmi.2014.10.016

Revision [7476]

Edited on 2015-04-07 14:25:46 by XianwenRen
Additions:
~1) **Xianwen Ren**(co-first), Yongfeng, Hu, Fan Yang, Yan Xiao, Li Li, Jie Dong, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[ Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections]]**--- Clin Microbiol Infec. 21(3):290.e1–290.e4, 2015.j.cmi.2014.10.016
Deletions:
~1) **Xianwen Ren**(co-first), Yongfeng, Hu, Fan Yang, Yan Xiao, Li Li, Jie Dong, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[http://dx.doi.org/10.1016/j.cmi.2014.10.016 Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections]]**--- Clin Microbiol Infec. accepted.

Revision [7405]

Edited on 2015-01-18 18:05:32 by XianwenRen
Additions:
~- ''Google site'' [[https://sites.google.com/site/renxwise/]]

Revision [7354]

Edited on 2014-12-31 14:40:07 by XianwenRen
Additions:
~1) **Xianwen Ren**(co-first), Yongfeng, Hu, Fan Yang, Yan Xiao, Li Li, Jie Dong, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[http://dx.doi.org/10.1016/j.cmi.2014.10.016 Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections]]**--- Clin Microbiol Infec. accepted.
Deletions:
~1) **Xianwen Ren**(co-first), Yongfeng, Hu, Fan Yang, Yan Xiao, Li Li, Jie Dong, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[ Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections]]**--- Clin Microbiol Infec. accepted.

Revision [7253]

Edited on 2014-11-03 10:47:56 by XianwenRen
Additions:
~1) **Xianwen Ren**(co-first), Yongfeng, Hu, Fan Yang, Yan Xiao, Li Li, Jie Dong, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[ Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections]]**--- Clin Microbiol Infec. accepted.
Deletions:
~1) **Xianwen Ren**, Yongfeng, Hu, Fan Yang, Yan Xiao, Li Li, Jie Dong, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[ Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections]]**--- Clin Microbiol Infec. accepted.

Revision [7252]

Edited on 2014-11-03 10:47:23 by XianwenRen
Additions:
~1) **Xianwen Ren**, Yongfeng, Hu, Fan Yang, Yan Xiao, Li Li, Jie Dong, Lilian Sun, Yafang Zhu and Qi Jin. ---**[[ Clinical utility comparison of two benchtop deep sequencing instruments for rapid diagnosis of newly emergent influenza infections]]**--- Clin Microbiol Infec. accepted.

Revision [7250]

Edited on 2014-11-02 14:00:39 by XianwenRen
Additions:
~-[[SNC]]

Revision [7026]

Edited on 2014-08-09 20:49:01 by XianwenRen
Additions:
~-[[QRidgeWalker QRidge]]
Deletions:
~-[[QRidge QRidgeWalker]]

Revision [7025]

Edited on 2014-08-09 20:48:21 by XianwenRen
Additions:
~-[[QRidge QRidgeWalker]]
Deletions:
~-[[QRidge]]

Revision [7024]

Edited on 2014-08-09 20:47:54 by XianwenRen
Additions:
~-[[QRidge]]
Deletions:
~-[[QRidgeWalker]]

Revision [6970]

Edited on 2014-06-10 09:35:10 by XianwenRen
Additions:
~1) Jian Yang, Ting Zhang, Li Guo, Yongfeng Hu, Jinlin Li, Haoxiang Su, Yan Xiao, **Xianwen Ren**, Jie Dong, Lilian Sun, Yan Xiao, Li Li, Fan Yang, Jianwei Wang, Hui Yuan and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/20/9/14-0257_article.htm Mutations of Novel Influenza A(H10N8) Virus in Chicken Eggs and MDCK Cells]]**--- Emerg Infect Dis. 2014 Sep [date cited]. http://dx.doi.org/10.3201/eid2009.140257

Revision [6914]

Edited on 2014-05-03 17:15:33 by XianwenRen
Additions:
~-[[iBFE]]

Revision [6913]

Edited on 2014-04-24 09:52:16 by XianwenRen
Additions:
~1) Li Yang, Zhiqiang Wu, **Xianwen Ren**(co-first), Fan Yang, Junpeng Zhang, Guimei He, Jie Dong, Lilian Sun, Yafang Zhu, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/20/7/14-0318_article.htm MERS–Related Betacoronavirus in Vespertilio superans Bats, China]]**--- Emerg Infect Dis. 2014 July [date cited]. http://dx.doi.org/10.3201/eid2007.140318
~1) Zhiqiang Wu, Li Yang, Fan Yang, **Xianwen Ren**(co-first), Jinyong Jiang, Jie Dong, Lilian Sun, Yafang Zhu, Hongning Zhou and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/20/6/13-1022_article.htm Novel Henipa-like Virus, Mojiang Paramyxovirus, in Rats, China, 2012]]**--- Emerg Infect Dis, 2014 June [date cited]. http://dx.doi.org/10.3201/eid2006.131022
Deletions:
~1) Zhiqiang Wu, Li Yang, Fan Yang, **Xianwen Ren**(co-first), Jinyong Jiang, Jie Dong, Lilian Sun, Yafang Zhu, Hongning Zhou and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/20/6/13-1022_article.htm Novel Henipa-like Virus, Mojiang Paramyxovirus, in Rats, China, 2012]]**--- Emerg Infect Dis, 2014.

Revision [6908]

Edited on 2014-03-16 17:00:30 by XianwenRen
Additions:
~1) Li Yang, Zhiqiang Wu, **Xianwen Ren**(co-first), Fan Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerg Infect Dis, 19(6), 2013.
Deletions:
~1) Li Yang, Zhiqiang Wu, **Xianwen Ren**(co-first), Fan Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerging Infectious Diseases, 19(6), 2013.

Revision [6907]

Edited on 2014-03-16 16:59:38 by XianwenRen
Additions:
~1) Zhiqiang Wu, Li Yang, Fan Yang, **Xianwen Ren**(co-first), Jinyong Jiang, Jie Dong, Lilian Sun, Yafang Zhu, Hongning Zhou and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/20/6/13-1022_article.htm Novel Henipa-like Virus, Mojiang Paramyxovirus, in Rats, China, 2012]]**--- Emerg Infect Dis, 2014.
Deletions:
~1) Zhiqiang Wu, Li Yang, Fan Yang, **Xianwen Ren**(co-first), Jinyong Jiang, Jie Dong, Lilian Sun, Yafang Zhu, Hongning Zhou and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/20/6/13-1022_article.htm Novel Henipa-like Virus, Mojiang Paramyxovirus, in Rats, China, 2012]]**--- Emerging Infectious Diseases, 2014.

Revision [6906]

Edited on 2014-03-16 16:58:39 by XianwenRen
Additions:
~1) Zhiqiang Wu, Li Yang, Fan Yang, **Xianwen Ren**(co-first), Jinyong Jiang, Jie Dong, Lilian Sun, Yafang Zhu, Hongning Zhou and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/20/6/13-1022_article.htm Novel Henipa-like Virus, Mojiang Paramyxovirus, in Rats, China, 2012]]**--- Emerging Infectious Diseases, 2014.

Revision [6884]

Edited on 2013-12-31 20:15:35 by XianwenRen
Additions:
""<img src="images/users/renxw-May2010.jpg" alt="...." style="float: right; margin: 1.0%; padding: 0.5%;">""
Deletions:
"<img src="images/users/renxw-May2010.jpg" alt="...." style="float: right; margin: 1.0%; padding: 0.5%;">""

Revision [6883]

Edited on 2013-12-31 09:48:13 by XianwenRen
Additions:
~1) Tao Liu, **Xianwen Ren**(co-first), Tengfei Xiao, Jian Yang, Xingye Xu, Jie Dong, Lilian Sun, Runsheng Chen and Qi Jin. ---**[[http://www.biomedcentral.com/1471-2164/14/931/abstract Identification and Characterisation of Non-coding Small RNAs in the Pathogenic Filamentous Fungus Trichophyton rubrum]]**--- BMC Genomics, 14:931, 2013.
Deletions:
~1) Tao Liu, **Xianwen Ren**(co-first), Tengfei Xiao, Jian Yang, Xingye Xu, Jie Dong, Lilian Sun, Runsheng Chen and Qi Jin. ---**[[http://www.biomedcentral.com/1471-2164/14/931/abstract Identification and Characterisation of Non-coding Small RNAs in the Pathogenic Filamentous Fungus Trichophyton rubrum]]**--- BMC Genomics, 2013, 14:931.

Revision [6882]

Edited on 2013-12-31 09:47:48 by XianwenRen
Additions:
~1) Tao Liu, **Xianwen Ren**(co-first), Tengfei Xiao, Jian Yang, Xingye Xu, Jie Dong, Lilian Sun, Runsheng Chen and Qi Jin. ---**[[http://www.biomedcentral.com/1471-2164/14/931/abstract Identification and Characterisation of Non-coding Small RNAs in the Pathogenic Filamentous Fungus Trichophyton rubrum]]**--- BMC Genomics, 2013, 14:931.
Deletions:
~1) Tao Liu, **Xianwen Ren**(co-first), Tengfei Xiao, Jian Yang, Xingye Xu, Jie Dong, Lilian Sun, Runsheng Chen and Qi Jin. ---**[[http://www.biomedcentral.com/1471-2164/14/931/abstract Identification and Characterisation of Non-coding Small RNAs in the Pathogenic Filamentous Fungus Trichophyton rubrum]]**--- BMC Genomics, in press.

Revision [6881]

Edited on 2013-12-31 09:47:14 by XianwenRen
Additions:
~1) Tao Liu, **Xianwen Ren**(co-first), Tengfei Xiao, Jian Yang, Xingye Xu, Jie Dong, Lilian Sun, Runsheng Chen and Qi Jin. ---**[[http://www.biomedcentral.com/1471-2164/14/931/abstract Identification and Characterisation of Non-coding Small RNAs in the Pathogenic Filamentous Fungus Trichophyton rubrum]]**--- BMC Genomics, in press.
Deletions:
~1) Tao Liu, **Xianwen Ren**(co-first), Tengfei Xiao, Jian Yang, Xingye Xu, Jie Dong, Lilian Sun, Runsheng Chen and Qi Jin. ---**[[ Identification and Characterisation of Non-coding Small RNAs in the Pathogenic Filamentous Fungus Trichophyton rubrum]]**--- BMC Genomics, in press.

Revision [6880]

Edited on 2013-12-30 13:21:12 by XianwenRen
Additions:
"<img src="images/users/renxw-May2010.jpg" alt="...." style="float: right; margin: 1.0%; padding: 0.5%;">""
~1) Tao Liu, **Xianwen Ren**(co-first), Tengfei Xiao, Jian Yang, Xingye Xu, Jie Dong, Lilian Sun, Runsheng Chen and Qi Jin. ---**[[ Identification and Characterisation of Non-coding Small RNAs in the Pathogenic Filamentous Fungus Trichophyton rubrum]]**--- BMC Genomics, in press.
Deletions:
""<img src="images/users/renxw-May2010.jpg" alt="...." style="float: right; margin: 1.0%; padding: 0.5%;">""

Revision [6860]

Edited on 2013-12-03 10:56:18 by XianwenRen
Additions:
~1) **Xianwen Ren**(co-first), Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/pdfs/13-0664.pdf Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis, 19(11):1881-1884, 2013.
~1) Yan Zhang, Haiying Liu, Linghang Wang, Fan Yang, Yongfeng Hu, **Xianwen Ren**, Guojun Li, Yang Yu, Shaoxia Sun, Yufen Li, Xinchun Chen, Xingwang Li and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0067430 Comparative Study of the Cytokine/Chemokine Response in Children with Differing Disease Severity in Enterovirus 71-Induced Hand, Foot, and Mouth Disease]]**--- PLoS One, 8(6): e67430, 2013; doi:10.1371/journal.pone.0067430.
Deletions:
~1) **Xianwen Ren**(co-first), Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/pdfs/13-0664.pdf Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis. 19(11):1881-1884, 2013.
~1) Yan Zhang, Haiying Liu, Linghang Wang, Fan Yang, Yongfeng Hu, **Xianwen Ren**, Guojun Li, Yang Yu, Shaoxia Sun, Yufen Li, Xinchun Chen, Xingwang Li and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0067430 Comparative Study of the Cytokine/Chemokine Response in Children with Differing Disease Severity in Enterovirus 71-Induced Hand, Foot, and Mouth Disease]]**--- PLoS One,8(6): e67430, 2013; doi:10.1371/journal.pone.0067430.

Revision [6859]

Edited on 2013-12-03 10:55:52 by XianwenRen
Additions:
~1) **Xianwen Ren**(co-first), Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/pdfs/13-0664.pdf Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis. 19(11):1881-1884, 2013.
Deletions:
~1) **Xianwen Ren**(co-first), Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/pdfs/13-0664.pdf Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis [Internet]. 19(11):1881-1884, 2013.

Revision [6831]

Edited on 2013-11-10 07:13:47 by XianwenRen
Additions:
~1) **Xianwen Ren**(co-first), Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/pdfs/13-0664.pdf Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis [Internet]. 19(11):1881-1884, 2013.
Deletions:
~1) **Xianwen Ren**(co-first), Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/13-0664_article.htm Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis [Internet]. 2013 Nov [date cited]. http://dx.doi.org/10.3201/eid1911.130664.

Revision [6754]

Edited on 2013-09-22 15:34:01 by XianwenRen
Additions:
~-[[QRidgeWalker]]
Deletions:
~-[[http://zhangroup.aporc.org/AttachedFiles/files.xml?action=download&file=QridgeAssemblerFast.zip QRidgeWalker]]

Revision [6753]

Edited on 2013-09-22 15:33:07 by XianwenRen
Additions:
~-[[http://zhangroup.aporc.org/AttachedFiles/files.xml?action=download&file=QridgeAssemblerFast.zip QRidgeWalker]]

Revision [6752]

Edited on 2013-09-22 15:27:51 by XianwenRen
Deletions:
~-[[qRidgeWalker]]

Revision [6751]

Edited on 2013-09-22 15:26:20 by XianwenRen
Additions:
~-[[qRidgeWalker]]

Revision [6715]

Edited on 2013-08-29 12:34:06 by XianwenRen
Additions:
=====Xianwen Ren=====
~- ''Private page'' [[renxw.private]]
Deletions:
===== Xianwen Ren=====
~- [[ Private pages]]

Revision [6714]

Edited on 2013-08-29 12:29:36 by XianwenRen
Additions:
~- [[ Private pages]]

Revision [6713]

Edited on 2013-08-27 10:39:12 by XianwenRen
Additions:
~1) **Xianwen Ren**. ---**[[https://www.landesbioscience.com/journals/virulence/article/26211/ Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, 4(6):437-438.
~1) **Xianwen Ren**(co-first), Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/13-0664_article.htm Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis [Internet]. 2013 Nov [date cited]. http://dx.doi.org/10.3201/eid1911.130664.
~1) Yan Zhang, Haiying Liu, Linghang Wang, Fan Yang, Yongfeng Hu, **Xianwen Ren**, Guojun Li, Yang Yu, Shaoxia Sun, Yufen Li, Xinchun Chen, Xingwang Li and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0067430 Comparative Study of the Cytokine/Chemokine Response in Children with Differing Disease Severity in Enterovirus 71-Induced Hand, Foot, and Mouth Disease]]**--- PLoS One,8(6): e67430, 2013; doi:10.1371/journal.pone.0067430.
~1) **Xianwen Ren**(co-first), Yong Wang, Xiang-Sun Zhang, Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/14/e143.abstract iPcc: a novel feature extraction method for accurate disease class discovery and prediction]]**--- Nucleic Acids Research, 41(14):e143, 2013; doi: 10.1093/nar/gkt343.
~1) Jianhua Zheng, **Xianwen Ren**, Candong Wei, Jian Yang, Yongfeng Hu, Liguo Liu, Xingye Xu, Jin Wang and Qi Jin. ---**[[http://www.mcponline.org/content/early/2013/04/24/mcp.M113.027318.abstract Analysis of the secretome and identification of novel constituents from culture filtrate of bacillus Calmette-Guerin using high-resolution mass spectrometry]]**--- Molecular & Cellular Proteomics, 24, 2013.
~1) Li Yang, Zhiqiang Wu, **Xianwen Ren**(co-first), Fan Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerging Infectious Diseases, 19(6), 2013.
~1) **Xianwen Ren**(co-first), Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/4/e53 ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, 41(4): e53, 2013. [[http://doc.aporc.org/wiki/EllipsoidFN software]]
~1) **Xianwen Ren**(co-first), Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0051188 Evaluating de Bruijn graph assemblers on 454 transcriptomic data]]**--- PLoS One, 7(12): e51188, 2012.
~1) Yongcui Wang, **Xianwen Ren**(co-first), Chunhua Zhang, Naiyang Deng, Xiang-Sun Zhang. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519312004754 Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction]]**--- Journal of Theoretical Biology 315(21): 64-70, 2012.
~1) Zhiqiang Wu, **Xianwen Ren**(co-first), Li Yang, Yongfeng Hu, Jian Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Jiang Du, Liguo Liu, Ying Xue, Jianmin Wang, Fan Yang, Shuyi Zhang, Qi Jin. ---**[[http://jvi.asm.org/content/86/20/10999.abstract Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces]]**--- Journal of Virology 86(20): 10999-11012, 2012.
~1) **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/13/70 A unified computational model for revealing and predicting subtle subtypes of cancers]]**--- BMC Bioinformatics 13:70, 2012.
~1) **Xianwen Ren**(co-first), Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/12/409 Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation]]**--- BMC Bioinformatics 12:409, 2011.
~1) **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**[[http://pubs.rsc.org/en/content/articlelanding/2011/mb/c1mb05018d The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method]]**--- Mol Biosyst. 2011, 7(6):2048-2054.
~1) Xia Wang, Junjie Yue, **Xianwen Ren**, Yuelan Wang, Mingfeng Tan, Beiping Li and Long Liang. ---**[[http://www.tbiomed.com/content/8/1/47 Modularity analysis based on predicted protein-protein interactions provides new insights into pathogenicity and cellular process of Escherichia coli O157:H7]]**--- Theoretical Biology and Medical Modelling 8:47, 2011.
~1) **Xianwen Ren**, Xiaobo Zhou, Ling-Yun Wu and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.
~1) **Xianwen Ren** and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**--- //Journal of Systems Science and Complexity//, 23(5), 971-977, 2010.
~1) Zhong-Yuan Zhang, Tao Li, Chris Ding, **Xianwen Ren**, and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/y62142r517762595/fulltext.pdf Binary matrix factorization for analyzing gene expression data]]**--- //Data Mining and Knowledge Discovery//, 20(1), 28-52, 2010.
~1) Chung-Che Chang, Xiaobo Zhou, Jesalyn J Taylor, Wan-Ting Huang, **Xianwen Ren**, Federico Monzon, Yongdong Feng, Pulivarthi H Rao, Xin-Yan Lu, Facchetti Fabio, Susan Hilsenbeck, Chad J Creighton, Elaine S Jaffe and Ching-Ching Lau. ---**[[http://www.jhoonline.org/content/2/1/47 Genomic profiling of plasmablastic lymphoma using array comparative genomic hybridization (aCGH): revealing significant overlapping genomic lesions with diffuse large B-cell lymphoma]]**--- //Journal of Hematology & Oncology//, 2:47, 2009.
Deletions:
~- **Xianwen Ren**. ---**[[https://www.landesbioscience.com/journals/virulence/article/26211/ Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, 4(6):437-438.
~- **Xianwen Ren**(co-first), Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/13-0664_article.htm Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis [Internet]. 2013 Nov [date cited]. http://dx.doi.org/10.3201/eid1911.130664.
~- Yan Zhang, Haiying Liu, Linghang Wang, Fan Yang, Yongfeng Hu, **Xianwen Ren**, Guojun Li, Yang Yu, Shaoxia Sun, Yufen Li, Xinchun Chen, Xingwang Li and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0067430 Comparative Study of the Cytokine/Chemokine Response in Children with Differing Disease Severity in Enterovirus 71-Induced Hand, Foot, and Mouth Disease]]**--- PLoS One,8(6): e67430, 2013; doi:10.1371/journal.pone.0067430.
~- **Xianwen Ren**(co-first), Yong Wang, Xiang-Sun Zhang, Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/14/e143.abstract iPcc: a novel feature extraction method for accurate disease class discovery and prediction]]**--- Nucleic Acids Research, 41(14):e143, 2013; doi: 10.1093/nar/gkt343.
~- Jianhua Zheng, **Xianwen Ren**, Candong Wei, Jian Yang, Yongfeng Hu, Liguo Liu, Xingye Xu, Jin Wang and Qi Jin. ---**[[http://www.mcponline.org/content/early/2013/04/24/mcp.M113.027318.abstract Analysis of the secretome and identification of novel constituents from culture filtrate of bacillus Calmette-Guerin using high-resolution mass spectrometry]]**--- Molecular & Cellular Proteomics, 24, 2013.
~- Li Yang, Zhiqiang Wu, **Xianwen Ren**(co-first), Fan Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerging Infectious Diseases, 19(6), 2013.
~- **Xianwen Ren**(co-first), Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/4/e53 ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, 41(4): e53, 2013. [[http://doc.aporc.org/wiki/EllipsoidFN software]]
~- **Xianwen Ren**(co-first), Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0051188 Evaluating de Bruijn graph assemblers on 454 transcriptomic data]]**--- PLoS One, 7(12): e51188, 2012.
~- Yongcui Wang, **Xianwen Ren**(co-first), Chunhua Zhang, Naiyang Deng, Xiang-Sun Zhang. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519312004754 Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction]]**--- Journal of Theoretical Biology 315(21): 64-70, 2012.
~- Zhiqiang Wu, **Xianwen Ren**(co-first), Li Yang, Yongfeng Hu, Jian Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Jiang Du, Liguo Liu, Ying Xue, Jianmin Wang, Fan Yang, Shuyi Zhang, Qi Jin. ---**[[http://jvi.asm.org/content/86/20/10999.abstract Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces]]**--- Journal of Virology 86(20): 10999-11012, 2012.
~- **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/13/70 A unified computational model for revealing and predicting subtle subtypes of cancers]]**--- BMC Bioinformatics 13:70, 2012.
~- **Xianwen Ren**(co-first), Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/12/409 Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation]]**--- BMC Bioinformatics 12:409, 2011.
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**[[http://pubs.rsc.org/en/content/articlelanding/2011/mb/c1mb05018d The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method]]**--- Mol Biosyst. 2011, 7(6):2048-2054.
~- Xia Wang, Junjie Yue, **Xianwen Ren**, Yuelan Wang, Mingfeng Tan, Beiping Li and Long Liang. ---**[[http://www.tbiomed.com/content/8/1/47 Modularity analysis based on predicted protein-protein interactions provides new insights into pathogenicity and cellular process of Escherichia coli O157:H7]]**--- Theoretical Biology and Medical Modelling 8:47, 2011.
~- **Xianwen Ren**, Xiaobo Zhou, Ling-Yun Wu and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.
~- **Xianwen Ren** and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**--- //Journal of Systems Science and Complexity//, 23(5), 971-977, 2010.
~- Zhong-Yuan Zhang, Tao Li, Chris Ding, **Xianwen Ren**, and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/y62142r517762595/fulltext.pdf Binary matrix factorization for analyzing gene expression data]]**--- //Data Mining and Knowledge Discovery//, 20(1), 28-52, 2010.
~- Chung-Che Chang, Xiaobo Zhou, Jesalyn J Taylor, Wan-Ting Huang, **Xianwen Ren**, Federico Monzon, Yongdong Feng, Pulivarthi H Rao, Xin-Yan Lu, Facchetti Fabio, Susan Hilsenbeck, Chad J Creighton, Elaine S Jaffe and Ching-Ching Lau. ---**[[http://www.jhoonline.org/content/2/1/47 Genomic profiling of plasmablastic lymphoma using array comparative genomic hybridization (aCGH): revealing significant overlapping genomic lesions with diffuse large B-cell lymphoma]]**--- //Journal of Hematology & Oncology//, 2:47, 2009.

Revision [6709]

Edited on 2013-08-23 06:36:45 by XianwenRen
Additions:
~- **Xianwen Ren**. ---**[[https://www.landesbioscience.com/journals/virulence/article/26211/ Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, 4(6):437-438.
Deletions:
~- **Xianwen Ren**. ---**[[ Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, in press.

Revision [6705]

Edited on 2013-08-20 10:58:46 by XianwenRen
Additions:
~- **Xianwen Ren**. ---**[[ Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, in press.
Deletions:
~- **Xianwen Ren**. ---**[[ Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, accepted.

Revision [6704]

Edited on 2013-08-20 10:57:40 by XianwenRen
Additions:
~- **Xianwen Ren**. ---**[[ Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, accepted.
Deletions:
~- **Xianwen Ren. ---**[[ Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, accepted.

Revision [6703]

Edited on 2013-08-20 10:57:11 by XianwenRen
Additions:
~- **Xianwen Ren. ---**[[ Toward a more systematic understanding of bacterial virulence factors and establishing Koch postulates in silico]]**--- Virulence, invited comment, accepted.

Revision [6702]

Edited on 2013-08-19 11:00:22 by XianwenRen
Additions:
~- **Xianwen Ren**(co-first), Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/13-0664_article.htm Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis [Internet]. 2013 Nov [date cited]. http://dx.doi.org/10.3201/eid1911.130664.
~- **Xianwen Ren**(co-first), Yong Wang, Xiang-Sun Zhang, Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/14/e143.abstract iPcc: a novel feature extraction method for accurate disease class discovery and prediction]]**--- Nucleic Acids Research, 41(14):e143, 2013; doi: 10.1093/nar/gkt343.
~- Li Yang, Zhiqiang Wu, **Xianwen Ren**(co-first), Fan Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerging Infectious Diseases, 19(6), 2013.
~- **Xianwen Ren**(co-first), Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/4/e53 ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, 41(4): e53, 2013. [[http://doc.aporc.org/wiki/EllipsoidFN software]]
~- **Xianwen Ren**(co-first), Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0051188 Evaluating de Bruijn graph assemblers on 454 transcriptomic data]]**--- PLoS One, 7(12): e51188, 2012.
~- Yongcui Wang, **Xianwen Ren**(co-first), Chunhua Zhang, Naiyang Deng, Xiang-Sun Zhang. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519312004754 Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction]]**--- Journal of Theoretical Biology 315(21): 64-70, 2012.
~- Zhiqiang Wu, **Xianwen Ren**(co-first), Li Yang, Yongfeng Hu, Jian Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Jiang Du, Liguo Liu, Ying Xue, Jianmin Wang, Fan Yang, Shuyi Zhang, Qi Jin. ---**[[http://jvi.asm.org/content/86/20/10999.abstract Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces]]**--- Journal of Virology 86(20): 10999-11012, 2012.
~- **Xianwen Ren**(co-first), Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/12/409 Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation]]**--- BMC Bioinformatics 12:409, 2011.
Deletions:
~- **Xianwen Ren**, Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/13-0664_article.htm Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis [Internet]. 2013 Nov [date cited]. http://dx.doi.org/10.3201/eid1911.130664.
~- **Xianwen Ren**, Yong Wang, Xiang-Sun Zhang, Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/14/e143.abstract iPcc: a novel feature extraction method for accurate disease class discovery and prediction]]**--- Nucleic Acids Research, 41(14):e143, 2013; doi: 10.1093/nar/gkt343.
~- Li Yang, Zhiqiang Wu, **Xianwen Ren**, Fan Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerging Infectious Diseases, 19(6), 2013.
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/4/e53 ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, 41(4): e53, 2013. [[http://doc.aporc.org/wiki/EllipsoidFN software]]
~- **Xianwen Ren**, Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0051188 Evaluating de Bruijn graph assemblers on 454 transcriptomic data]]**--- PLoS One, 7(12): e51188, 2012.
~- Yongcui Wang, **Xianwen Ren**, Chunhua Zhang, Naiyang Deng, Xiang-Sun Zhang. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519312004754 Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction]]**--- Journal of Theoretical Biology 315(21): 64-70, 2012.
~- Zhiqiang Wu, **Xianwen Ren**, Li Yang, Yongfeng Hu, Jian Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Jiang Du, Liguo Liu, Ying Xue, Jianmin Wang, Fan Yang, Shuyi Zhang, Qi Jin. ---**[[http://jvi.asm.org/content/86/20/10999.abstract Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces]]**--- Journal of Virology 86(20): 10999-11012, 2012.
~- **Xianwen Ren**, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/12/409 Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation]]**--- BMC Bioinformatics 12:409, 2011.

Revision [6697]

Edited on 2013-08-16 09:31:29 by XianwenRen
Additions:
~- **Xianwen Ren**, Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/13-0664_article.htm Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis [Internet]. 2013 Nov [date cited]. http://dx.doi.org/10.3201/eid1911.130664.
Deletions:
~- Xianwen Ren, Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/13-0664_article.htm Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis [Internet]. 2013 Nov [date cited]. http://dx.doi.org/10.3201/eid1911.130664.

Revision [6696]

Edited on 2013-08-16 09:31:08 by XianwenRen
Additions:
~- Xianwen Ren, Fan Yang, Yongfeng Hu, Ting Zhang, Liguo Liu, Jie Dong, Lilian Sun, Yafang Zhu, Yan Xiao, Li Li, Jian Yang, Jianwei Wang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/11/13-0664_article.htm Full Genome of Influenza A (H7N9) Virus Derived by Direct Sequencing without Culture]]**--- Emerg Infect Dis [Internet]. 2013 Nov [date cited]. http://dx.doi.org/10.3201/eid1911.130664.

Revision [6690]

Edited on 2013-08-09 13:03:30 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Xiang-Sun Zhang, Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/14/e143.abstract iPcc: a novel feature extraction method for accurate disease class discovery and prediction]]**--- Nucleic Acids Research, 41(14):e143, 2013; doi: 10.1093/nar/gkt343.
Deletions:
~- **Xianwen Ren**, Yong Wang, Xiang-Sun Zhang, Qi Jin. ---**[[http://nar.oxfordjournals.org/cgi/content/abstract/gkt343?ijkey=V2ME2VmMCaFuwj6&keytype=ref iPcc: a novel feature extraction method for accurate disease class discovery and prediction]]**--- Nucleic Acids Research, 2013; doi: 10.1093/nar/gkt343.

Revision [6595]

Edited on 2013-07-01 09:51:23 by XianwenRen
Additions:
~- Yan Zhang, Haiying Liu, Linghang Wang, Fan Yang, Yongfeng Hu, **Xianwen Ren**, Guojun Li, Yang Yu, Shaoxia Sun, Yufen Li, Xinchun Chen, Xingwang Li and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0067430 Comparative Study of the Cytokine/Chemokine Response in Children with Differing Disease Severity in Enterovirus 71-Induced Hand, Foot, and Mouth Disease]]**--- PLoS One,8(6): e67430, 2013; doi:10.1371/journal.pone.0067430.

Revision [6591]

Edited on 2013-06-13 18:48:57 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Xiang-Sun Zhang, Qi Jin. ---**[[http://nar.oxfordjournals.org/cgi/content/abstract/gkt343?ijkey=V2ME2VmMCaFuwj6&keytype=ref iPcc: a novel feature extraction method for accurate disease class discovery and prediction]]**--- Nucleic Acids Research, 2013; doi: 10.1093/nar/gkt343.
Deletions:
~- **Xianwen Ren**, Yong Wang, Xiang-Sun Zhang, Qi Jin. ---**iPcc: a novel feature extraction method for accurate disease class discovery and prediction**--- Nucleic Acids Research, accepted.

Revision [6566]

Edited on 2013-05-21 10:35:34 by XianwenRen
Additions:
~- Jianhua Zheng, **Xianwen Ren**, Candong Wei, Jian Yang, Yongfeng Hu, Liguo Liu, Xingye Xu, Jin Wang and Qi Jin. ---**[[http://www.mcponline.org/content/early/2013/04/24/mcp.M113.027318.abstract Analysis of the secretome and identification of novel constituents from culture filtrate of bacillus Calmette-Guerin using high-resolution mass spectrometry]]**--- Molecular & Cellular Proteomics, 24, 2013.

Revision [6565]

Edited on 2013-05-21 10:21:45 by XianwenRen
Additions:
~- Li Yang, Zhiqiang Wu, **Xianwen Ren**, Fan Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerging Infectious Diseases, 19(6), 2013.
Deletions:
~- Li Yang, Zhiqiang Wu, **Xianwen Ren**, Fan Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Fan Yang, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerging Infectious Diseases, 19(6), 2013.

Revision [6509]

Edited on 2013-04-13 07:27:46 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Xiang-Sun Zhang, Qi Jin. ---**iPcc: a novel feature extraction method for accurate disease class discovery and prediction**--- Nucleic Acids Research, accepted.
~- Li Yang, Zhiqiang Wu, **Xianwen Ren**, Fan Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Yafang Zhu, Jiang Du, Fan Yang, Shuyi Zhang and Qi Jin. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerging Infectious Diseases, 19(6), 2013.
Deletions:
~- Yang Li, Wu Zhiqiang, Ren Xianwen, Yang Fan, He Guimei, Zhang Junpeng, Dong Jie, Sun Lilian, Zhu Yafang, Du Jiang, Yang Fan, Zhang Shuyi, and Jin Qi. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerging Infectious Diseases, 19(6), 2013.

Revision [6508]

Edited on 2013-04-13 07:22:09 by XianwenRen
Additions:
~- Yang Li, Wu Zhiqiang, Ren Xianwen, Yang Fan, He Guimei, Zhang Junpeng, Dong Jie, Sun Lilian, Zhu Yafang, Du Jiang, Yang Fan, Zhang Shuyi, and Jin Qi. ---**[[http://wwwnc.cdc.gov/eid/article/19/6/12-1648_article.htm Novel SARS-like Betacoronaviruses in Bats, China, 2011]]**--- Emerging Infectious Diseases, 19(6), 2013.

Revision [6249]

Edited on 2013-03-17 20:39:34 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/41/4/e53 ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, 41(4): e53, 2013. [[http://doc.aporc.org/wiki/EllipsoidFN software]]
Deletions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/early/2012/12/20/nar.gks1288.abstract ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, 41(4): e53, 2013. [[http://doc.aporc.org/wiki/EllipsoidFN software]]

Revision [6177]

Edited on 2013-02-19 20:15:20 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/early/2012/12/20/nar.gks1288.abstract ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, 41(4): e53, 2013. [[http://doc.aporc.org/wiki/EllipsoidFN software]]
Deletions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/early/2012/12/20/nar.gks1288.abstract ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, 2012. [[http://doc.aporc.org/wiki/EllipsoidFN software]]

Revision [6134]

Edited on 2012-12-24 16:38:02 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/early/2012/12/20/nar.gks1288.abstract ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, 2012. [[http://doc.aporc.org/wiki/EllipsoidFN software]]
Deletions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/early/2012/12/20/nar.gks1288.abstract ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, accepted. [[http://doc.aporc.org/wiki/EllipsoidFN software]]

Revision [6132]

Edited on 2012-12-23 09:42:32 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[http://nar.oxfordjournals.org/content/early/2012/12/20/nar.gks1288.abstract ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, accepted. [[http://doc.aporc.org/wiki/EllipsoidFN software]]
Deletions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions**--- Nucleic Acids Research, accepted. [[http://doc.aporc.org/wiki/EllipsoidFN software]]

Revision [6127]

Edited on 2012-12-08 10:17:19 by XianwenRen
Additions:
~- **Xianwen Ren**, Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0051188 Evaluating de Bruijn graph assemblers on 454 transcriptomic data]]**--- PLoS One, 7(12): e51188, 2012.
Deletions:
~- **Xianwen Ren**, Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**[[Evaluating de Bruijn graph assemblers on 454 transcriptomic data http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0051188]]**--- PLoS One, 7(12): e51188, 2012.

Revision [6126]

Edited on 2012-12-08 10:16:45 by XianwenRen
Additions:
~- **Xianwen Ren**, Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**[[Evaluating de Bruijn graph assemblers on 454 transcriptomic data http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0051188]]**--- PLoS One, 7(12): e51188, 2012.
Deletions:
~- **Xianwen Ren**, Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**Evaluating de Bruijn graph assemblers on 454 transcriptomic data**--- PLoS One, accepted.

Revision [6113]

Edited on 2012-11-22 13:26:18 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions**--- Nucleic Acids Research, accepted. [[http://doc.aporc.org/wiki/EllipsoidFN software]]
Deletions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions**--- Nucleic Acids Research, accepted.

Revision [6112]

Edited on 2012-11-21 13:19:03 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions**--- Nucleic Acids Research, accepted.
~- **Xianwen Ren**, Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**Evaluating de Bruijn graph assemblers on 454 transcriptomic data**--- PLoS One, accepted.
Deletions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, accepted.
~- **Xianwen Ren**, Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**[[Evaluating de Bruijn graph assemblers on 454 transcriptomic data]]**--- PLoS One, accepted.

Revision [6111]

Edited on 2012-11-21 13:17:55 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Luonan Chen, Xiang-Sun Zhang and Qi Jin. ---**[[ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions]]**--- Nucleic Acids Research, accepted.
~- **Xianwen Ren**, Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu and Qi Jin. ---**[[Evaluating de Bruijn graph assemblers on 454 transcriptomic data]]**--- PLoS One, accepted.

Revision [6065]

Edited on 2012-10-14 09:29:00 by XianwenRen
Additions:
~- Yongcui Wang, **Xianwen Ren**, Chunhua Zhang, Naiyang Deng, Xiang-Sun Zhang. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519312004754 Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction]]**--- Journal of Theoretical Biology 315(21): 64-70, 2012.
Deletions:
~- Yongcui Wang,**Xianwen Ren**,Chunhua Zhang,Naiyang Deng,Xiang-Sun Zhang. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519312004754 Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction]]**--- Journal of Theoretical Biology 315(21): 64-70, 2012.

Revision [6064]

Edited on 2012-10-14 09:28:34 by XianwenRen
Additions:
=== {{color c="green" text=" Publications"}}===
~- Yongcui Wang,**Xianwen Ren**,Chunhua Zhang,Naiyang Deng,Xiang-Sun Zhang. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519312004754 Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction]]**--- Journal of Theoretical Biology 315(21): 64-70, 2012.
Deletions:
=== {{color c="green" text=" Publications"}}===

Revision [6063]

Edited on 2012-10-04 10:55:01 by XianwenRen
Additions:
===[[http://www.ipbcams.ac.cn Institute of Pathogen Biology, Chinese Academy of Medical Sciences]]===
Deletions:
=====[[http://www.ipbcams.ac.cn Institute of Pathogen Biology, Chinese Academy of Medical Sciences]]=====

Revision [6062]

Edited on 2012-10-04 10:54:06 by XianwenRen
Additions:
=== {{color c="green" text=" Education "}} ===
Deletions:
=== {{color c="green" text=" Educational Background "}} ===

Revision [6061]

Edited on 2012-10-04 10:51:29 by XianwenRen
Additions:
~- Zhiqiang Wu, **Xianwen Ren**, Li Yang, Yongfeng Hu, Jian Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Jiang Du, Liguo Liu, Ying Xue, Jianmin Wang, Fan Yang, Shuyi Zhang, Qi Jin. ---**[[http://jvi.asm.org/content/86/20/10999.abstract Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces]]**--- Journal of Virology 86(20): 10999-11012, 2012.
Deletions:
~- Zhiqiang Wu, **Xianwen Ren**, Li Yang, Yongfeng Hu, Jian Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Jiang Du, Liguo Liu, Ying Xue, Jianmin Wang, Fan Yang, Shuyi Zhang, Qi Jin. ---**[[http://jvi.asm.org/content/86/20/10999.abstract Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces]]**--- Journal of Virology vol. 86 no. 20 10999-11012, 2012.

Revision [6060]

Edited on 2012-10-04 10:50:15 by XianwenRen
Additions:
~- Zhiqiang Wu, **Xianwen Ren**, Li Yang, Yongfeng Hu, Jian Yang, Guimei He, Junpeng Zhang, Jie Dong, Lilian Sun, Jiang Du, Liguo Liu, Ying Xue, Jianmin Wang, Fan Yang, Shuyi Zhang, Qi Jin. ---**[[http://jvi.asm.org/content/86/20/10999.abstract Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces]]**--- Journal of Virology vol. 86 no. 20 10999-11012, 2012.
~- **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/13/70 A unified computational model for revealing and predicting subtle subtypes of cancers]]**--- BMC Bioinformatics 13:70, 2012.
Deletions:
~- **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/13/70 A unified computational model for revealing and predicting subtle subtypes of cancers]]**--- BMC Bioinformatics 2012, 13:70.

Revision [6040]

Edited on 2012-09-02 15:53:10 by XianwenRen
Additions:
~-[[ellipsoidFN]]
Deletions:
~_[[ellipsoidFN]]

Revision [6039]

Edited on 2012-09-02 15:52:49 by XianwenRen
Additions:
~_[[ellipsoidFN]]

Revision [5943]

Edited on 2012-06-11 10:57:57 by XianwenRen
Additions:
~- Xia Wang, Junjie Yue, **Xianwen Ren**, Yuelan Wang, Mingfeng Tan, Beiping Li and Long Liang. ---**[[http://www.tbiomed.com/content/8/1/47 Modularity analysis based on predicted protein-protein interactions provides new insights into pathogenicity and cellular process of Escherichia coli O157:H7]]**--- Theoretical Biology and Medical Modelling 8:47, 2011.

Revision [5899]

Edited on 2012-05-02 11:10:03 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/13/70 A unified computational model for revealing and predicting subtle subtypes of cancers]]**--- BMC Bioinformatics 2012, 13:70.
Deletions:
~- **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**A unified computational model for revealing and predicting subtle subtypes of cancers**--- accepted.

Revision [5883]

Edited on 2012-04-05 15:57:12 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**A unified computational model for revealing and predicting subtle subtypes of cancers**--- accepted.
Deletions:
~- **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**An integrated optimization framework for class discovery and class prediction based on gene expression profiles**--- submitted.

Revision [5668]

Edited on 2011-11-04 10:56:14 by XianwenRen
Additions:
~- **Xianwen Ren**, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/12/409 Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation]]**--- BMC Bioinformatics 12:409, 2011.
Deletions:
~- **Xianwen Ren**, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation**--- BMC Bioinformatics 12:409, 2011.

Revision [5667]

Edited on 2011-11-04 10:53:38 by XianwenRen
Additions:
~- **Xianwen Ren**, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation**--- BMC Bioinformatics 12:409, 2011.
Deletions:
~- **Xianwen Ren**, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**Improving accuracy of protein-protein interaction prediction by considering the converse problem**--- accepted by BMC Bioinformatics.

Revision [5592]

Edited on 2011-10-17 10:07:39 by XianwenRen
Additions:
~- **Xianwen Ren**, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**Improving accuracy of protein-protein interaction prediction by considering the converse problem**--- accepted by BMC Bioinformatics.
Deletions:
~- **Xianwen Ren**, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**Optimal vector representations for protein-protein interaction prediction**--- submitted.

Revision [5402]

Edited on 2011-06-16 16:08:16 by XianwenRen
Additions:
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**[[http://pubs.rsc.org/en/content/articlelanding/2011/mb/c1mb05018d The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method]]**--- Mol Biosyst. 2011, 7(6):2048-2054.
Deletions:
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**[[http://pubs.rsc.org/en/journals/journalissues/mb The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method]]**--- Mol Biosyst. 2011, 7(6):2048-2054.

Revision [5401]

Edited on 2011-06-16 16:07:00 by XianwenRen
Additions:
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**[[http://pubs.rsc.org/en/journals/journalissues/mb The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method]]**--- Mol Biosyst. 2011, 7(6):2048-2054.
Deletions:
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method**--- Mol Biosyst. 2011, 7(6):2048-2054.

Revision [5400]

Edited on 2011-06-16 16:04:24 by XianwenRen
Additions:
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method**--- Mol Biosyst. 2011, 7(6):2048-2054.
Deletions:
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method**--- accepted.

Revision [5204]

Edited on 2011-03-24 09:38:04 by XianwenRen
Additions:
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method**--- accepted.
Deletions:
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method**--- submitted.

Revision [5145]

Edited on 2011-02-25 13:10:00 by XianwenRen
Additions:
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**The network properties of Myelodysplastic Syndromes pathogenesis revealed by an integrative systems biological method**--- submitted.
Deletions:
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**The network properties of Myledysplastic Syndromes pathogenesis revealed by an integrative systems biological method**--- submitted.

Revision [5141]

Edited on 2011-02-24 11:47:03 by XianwenRen
Additions:
===== Xianwen Ren=====
=====[[http://www.ipbcams.ac.cn Institute of Pathogen Biology, Chinese Academy of Medical Sciences]]=====
Deletions:
====== Xianwen Ren======
[[http://www.ipbcams.ac.cn Institute of Pathogen Biology, Chinese Academy of Medical Sciences]]

Revision [5140]

Edited on 2011-02-24 11:45:07 by XianwenRen
Additions:
""<img src="images/users/renxw-May2010.jpg" alt="...." style="float: right; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="images/users/renxw-suzhou-small.jpg" alt="...." style="float: right; margin: 1.0%; padding: 0.5%;">""

Revision [5139]

Edited on 2011-02-24 11:14:49 by XianwenRen
Additions:
=== {{color c="green" text=" Publications"}}===
Deletions:
=== Publications===

Revision [5138]

Edited on 2011-02-24 11:11:07 by XianwenRen
Additions:
~- **Xianwen Ren**, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**An integrated optimization framework for class discovery and class prediction based on gene expression profiles**--- submitted.
~- **Xianwen Ren**, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**Optimal vector representations for protein-protein interaction prediction**--- submitted.
~- **Xianwen Ren**, Xiaobo Zhou and Chung-Che Chang. ---**The network properties of Myledysplastic Syndromes pathogenesis revealed by an integrative systems biological method**--- submitted.
~- **Xianwen Ren**, Xiaobo Zhou, Ling-Yun Wu and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.
~- **Xianwen Ren** and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**--- //Journal of Systems Science and Complexity//, 23(5), 971-977, 2010.
~- Zhong-Yuan Zhang, Tao Li, Chris Ding, **Xianwen Ren**, and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/y62142r517762595/fulltext.pdf Binary matrix factorization for analyzing gene expression data]]**--- //Data Mining and Knowledge Discovery//, 20(1), 28-52, 2010.
~- Chung-Che Chang, Xiaobo Zhou, Jesalyn J Taylor, Wan-Ting Huang, **Xianwen Ren**, Federico Monzon, Yongdong Feng, Pulivarthi H Rao, Xin-Yan Lu, Facchetti Fabio, Susan Hilsenbeck, Chad J Creighton, Elaine S Jaffe and Ching-Ching Lau. ---**[[http://www.jhoonline.org/content/2/1/47 Genomic profiling of plasmablastic lymphoma using array comparative genomic hybridization (aCGH): revealing significant overlapping genomic lesions with diffuse large B-cell lymphoma]]**--- //Journal of Hematology & Oncology//, 2:47, 2009.
Deletions:
~- Xianwen Ren, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**An integrated optimization framework for class discovery and class prediction based on gene expression profiles**--- submitted.
~- Xianwen Ren, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**Optimal vector representations for protein-protein interaction prediction**--- submitted.
~- Xianwen Ren, Xiaobo Zhou and Chung-Che Chang. ---**The network properties of Myledysplastic Syndromes pathogenesis revealed by an integrative systems biological method**--- submitted.
~- Xianwen Ren, Xiaobo Zhou, Ling-Yun Wu and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.
~- Xianwen Ren and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**--- //Journal of Systems Science and Complexity//, 23(5), 971-977, 2010.
~- Zhong-Yuan Zhang, Tao Li, Chris Ding, Xian-Wen Ren, and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/y62142r517762595/fulltext.pdf Binary matrix factorization for analyzing gene expression data]]**--- //Data Mining and Knowledge Discovery//, 20(1), 28-52, 2010.
~- Chung-Che Chang, Xiaobo Zhou, Jesalyn J Taylor, Wan-Ting Huang, Xianwen Ren, Federico Monzon, Yongdong Feng, Pulivarthi H Rao, Xin-Yan Lu, Facchetti Fabio, Susan Hilsenbeck, Chad J Creighton, Elaine S Jaffe and Ching-Ching Lau. ---**[[http://www.jhoonline.org/content/2/1/47 Genomic profiling of plasmablastic lymphoma using array comparative genomic hybridization (aCGH): revealing significant overlapping genomic lesions with diffuse large B-cell lymphoma]]**--- //Journal of Hematology & Oncology//, 2:47, 2009.

Revision [5137]

Edited on 2011-02-24 11:09:18 by XianwenRen

No Differences

Revision [5136]

Edited on 2011-02-24 11:08:16 by XianwenRen
Additions:
[[http://www.ipbcams.ac.cn Institute of Pathogen Biology, Chinese Academy of Medical Sciences]]
~- Xianwen Ren, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**An integrated optimization framework for class discovery and class prediction based on gene expression profiles**--- submitted.
~- Xianwen Ren, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**Optimal vector representations for protein-protein interaction prediction**--- submitted.
~- Xianwen Ren, Xiaobo Zhou and Chung-Che Chang. ---**The network properties of Myledysplastic Syndromes pathogenesis revealed by an integrative systems biological method**--- submitted.
Deletions:
[[www.ipbcams.ac.cn Institute of Pathogen Biology, Chinese Academy of Medical Sciences]]
~- Xianwen Ren, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**[[ An integrated optimization framework for class discovery and class prediction based on gene expression profiles]]**--- submitted.
~- Xianwen Ren, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[ Optimal vector representations for protein-protein interaction prediction]]**--- submitted.
~- Xianwen Ren, Xiaobo Zhou and Chung-Che Chang. ---**[[ The network properties of Myledysplastic Syndromes pathogenesis revealed by an integrative systems biological method]]**--- submitted.

Revision [5135]

Edited on 2011-02-24 10:59:40 by XianwenRen
Additions:
""<img src="images/users/renxw-suzhou-small.jpg" alt="...." style="float: right; margin: 1.0%; padding: 0.5%;">""
=== Publications===
~- Xianwen Ren, Yong Wang, Jiguang Wang and Xiang-Sun Zhang. ---**[[ An integrated optimization framework for class discovery and class prediction based on gene expression profiles]]**--- submitted.
~- Xianwen Ren, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[ Optimal vector representations for protein-protein interaction prediction]]**--- submitted.
~- Xianwen Ren, Xiaobo Zhou and Chung-Che Chang. ---**[[ The network properties of Myledysplastic Syndromes pathogenesis revealed by an integrative systems biological method]]**--- submitted.
~- Xianwen Ren, Xiaobo Zhou, Ling-Yun Wu and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1752-0509/4/72 An information-flow-based model with dissipation, saturation and direction for active pathway inference]]**--- //BMC Systems Biology//, 4:72, 2010.
~- Xianwen Ren and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/w40345661t887670/ A linear programming model based on network flow for pathway inference]]**--- //Journal of Systems Science and Complexity//, 23(5), 971-977, 2010.
~- Zhong-Yuan Zhang, Tao Li, Chris Ding, Xian-Wen Ren, and Xiang-Sun Zhang. ---**[[http://www.springerlink.com/content/y62142r517762595/fulltext.pdf Binary matrix factorization for analyzing gene expression data]]**--- //Data Mining and Knowledge Discovery//, 20(1), 28-52, 2010.
~- Chung-Che Chang, Xiaobo Zhou, Jesalyn J Taylor, Wan-Ting Huang, Xianwen Ren, Federico Monzon, Yongdong Feng, Pulivarthi H Rao, Xin-Yan Lu, Facchetti Fabio, Susan Hilsenbeck, Chad J Creighton, Elaine S Jaffe and Ching-Ching Lau. ---**[[http://www.jhoonline.org/content/2/1/47 Genomic profiling of plasmablastic lymphoma using array comparative genomic hybridization (aCGH): revealing significant overlapping genomic lesions with diffuse large B-cell lymphoma]]**--- //Journal of Hematology & Oncology//, 2:47, 2009.
Deletions:
""<img src="images/users/renxw-suzhou-small.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [5081]

Edited on 2011-01-11 16:14:48 by XianwenRen
Additions:
~-[[SourceCodeKQP4PPI]]
Deletions:
~-[[ITPI]]
~-[[KQP4PPI]]

Revision [5079]

Edited on 2011-01-11 16:03:57 by XianwenRen
Additions:
~-[[ITPI]]
~-[[KQP4PPI]]
~-[[OTCC]]
Deletions:
~-[[SourceCodesITPI]]
~-[[SourceCodeKQP4PPI]]
~-[[SourceCodeQuadClust4ClassDiscoveryAndClassPrediction]]

Revision [5042]

Edited on 2011-01-05 20:57:50 by XianwenRen
Additions:
~-[[SourceCodeQuadClust4ClassDiscoveryAndClassPrediction]]

Revision [4988]

Edited on 2010-12-18 21:42:36 by XianwenRen
Additions:
~-[[SourceCodeKQP4PPI]]
Deletions:
~-[[SourceCode-KQP4PPI]]

Revision [4984]

Edited on 2010-12-18 20:31:55 by XianwenRen
Additions:
~-[[SourceCode-KQP4PPI]]

Revision [4857]

Edited on 2010-09-13 20:56:57 by XianwenRen

No Differences

Revision [4856]

Edited on 2010-09-13 20:56:35 by XianwenRen

No Differences

Revision [4854]

Edited on 2010-09-13 10:27:37 by XianwenRen
Additions:
=== {{color c="green" text=" Educational Background "}} ===
~- Ph.D Major in Operational Research, Academy of Mathematics & System Sciences, CAS, 2007.9 -2010.7
=== {{color c="green" text="Softwares of Publications:"}} ===
=== {{color c="green" text="Research Interests"}} ===
=== {{color c="green" text="Hobbies"}} ===
Deletions:
=== {{colour c="green" text=" Educational Background "}} ===
~- Ph.D candidate Major in Operational Research, Academy of Mathematics & System Sciences, CAS, 2007.9 -
=== {{colour c="green" text="Softwares of Publications:"}} ===
=== {{colour c="green" text="Research Interests"}} ===
=== {{colour c="green" text="Hobbies"}} ===
=== Links ===
~- [[http://www.nature.com Nature]]
~- [[http://www.plos.org PLoS]]
~- [[http://www.sciencemag.org Science]]
~- [[http://www.pnas.org PNAS]]
~- [[http://www.ctex.org CTEX]]

Revision [4853]

Edited on 2010-09-13 10:19:42 by XianwenRen
Additions:
[[www.ipbcams.ac.cn Institute of Pathogen Biology, Chinese Academy of Medical Sciences]]
Deletions:
[[www.amss.ac.cn Academy of Mathematics and Systems Science]]
Institute of Applied Mathematic
Academy of Mathematics and Systems Science
Chinese Academy of Science

Revision [4852]

Edited on 2010-09-13 10:17:30 by XianwenRen
Additions:
""<img src="images/users/renxw-suzhou-small.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="images/users/renxw-suzhou.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [4851]

Edited on 2010-09-13 10:11:21 by XianwenRen
Additions:
""<img src="images/users/renxw-suzhou.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="images/users/renxw.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [4279]

Edited on 2009-09-02 17:29:41 by XianwenRen
Additions:
~- ''E-mail:'' [[renxwise@gmail.com]]
Deletions:
~- ''E-mail:'' [[renxwise@yahoo.com.cn]]

Revision [3986]

Edited on 2009-04-18 06:46:31 by GuangxuJin
Additions:
~-[[SourceCodesITPI]]
Deletions:
~-[[SourceCodes-ITPI]]

Revision [3985]

Edited on 2009-04-18 06:39:00 by XianwenRen
Additions:
~-[[SourceCodes-ITPI]]
Deletions:
~-[[SourceCodes-Information_Theoretical_Pathway_Inference]]

Revision [3984]

Edited on 2009-04-18 06:36:16 by XianwenRen
Additions:
=== {{colour c="green" text="Softwares of Publications:"}} ===
~-[[SourceCodes-Information_Theoretical_Pathway_Inference]]

Revision [3195]

Edited on 2008-04-05 23:47:58 by XianwenRen
Additions:
""<img src="images/users/renxw.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="images/users/DSCN1929.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [3194]

Edited on 2008-04-05 23:47:34 by XianwenRen
Additions:
""<img src="images/users/DSCN1929.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
Deletions:
""<img src="images/users/renxw.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""

Revision [3192]

Edited on 2008-04-02 19:26:23 by XianwenRen
Additions:
~- [[http://www.nature.com Nature]]
~- [[http://www.plos.org PLoS]]
~- [[http://www.sciencemag.org Science]]
~- [[http://www.pnas.org PNAS]]
~- [[http://www.ctex.org CTEX]]
Deletions:
~- [[http://www.madio.net 矩阵论坛]]
~- [[http://stommel.tamu.edu/~baum/toolboxes.html Matlab toolbox]]
~- [[http://www.ctex.org CTEX.ORG]]
~- [[http://mathworld.wolfram.com/ Mathworld]]

Revision [3191]

Edited on 2008-04-02 19:22:48 by XianwenRen
Additions:
~- ''Birth:'' March 1983
Deletions:
~- ''Date of birth:'' March 1983

Revision [3190]

Edited on 2008-04-02 19:22:21 by XianwenRen

No Differences

Revision [3189]

Edited on 2008-04-02 19:10:48 by XianwenRen
Additions:
""<img src="images/users/renxw.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
====== Xianwen Ren======
~- ''Name:'' Xianwen Ren
~- ''Date of birth:'' March 1983
~- ''E-mail:'' [[renxwise@yahoo.com.cn]]
~- Ph.D candidate Major in Operational Research, Academy of Mathematics & System Sciences, CAS, 2007.9 -
~- Master Major in Genetics, Academy of Military Medical Science, 2004.09 - 2007.07
~- Bachelor Major in Biology and Mathematics, Nankai University, 2000.09 - 2004.07
=== {{colour c="green" text="Research Interests"}} ===
~- Evolution
~- Pathogenesis of Infectious Diseases
~- Bioinformatics and Computational Biology
~- Network Biology and Systems Biology
=== {{colour c="green" text="Hobbies"}} ===
~- Shuttlecock, Table tennis, Mountain climbing
Deletions:
""<img src="images/users/wjg3.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
====== Jiguang Wang======
[[http://www.gucas.ac.cn/gscascn/index.aspx Graduate University of Chinese Academy of Science]], China
~- ''Name:'' Jiguang Wang
~- ''Date of birth:'' October 1984
~- ''E-mail:'' [[bobbit-1@163.com]]
~- ''My blog:'' http://www.blog.163.com/bobbit-1/
~- Ph.D. expected, 2011.7, Academy of Mathematics & System Sciences, CAS, 2006.9 ~ now
~- B.A., Beijing Institute of Technology, 2002.9 ~ 2006.7
=== {{colour c="green" text="Research Areas"}} ===
~- Protein - protein interaction (PPI) network
~- Protein structure alignment
~- Protein - ligand interaction
~- Complex networks
=== {{colour c="green" text="Award and Honors"}} ===
~- “Three goods” Student in AMSS, 2007
~- Beijing Outstanding Graduates, 2006
~- Honorable Prize in Mathematical Contest in Modeling held by American, 2005
~- Second class Prize in CUMCM, 2005
~- Second class Prize in CUMCM, 2004
~- First class Prize in Chinese Mathematical Olympiad in Senior, 2002
=== {{colour c="green" text="Interests"}} ===
~- Sports, such as basketball, ping-pang, and so on
~- Reading science fiction

Revision [3185]

Edited on 2008-04-02 18:42:27 by XianwenRen
Additions:
""<img src="images/users/wjg3.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;">""
====== Jiguang Wang======
[[www.amss.ac.cn Academy of Mathematics and Systems Science]]
[[http://www.gucas.ac.cn/gscascn/index.aspx Graduate University of Chinese Academy of Science]], China
Institute of Applied Mathematic
Academy of Mathematics and Systems Science
Chinese Academy of Science
~- ''Name:'' Jiguang Wang
~- ''Date of birth:'' October 1984
~- ''E-mail:'' [[bobbit-1@163.com]]
~- ''My blog:'' http://www.blog.163.com/bobbit-1/
----
=== {{colour c="green" text=" Educational Background "}} ===
~- Ph.D. expected, 2011.7, Academy of Mathematics & System Sciences, CAS, 2006.9 ~ now
~- B.A., Beijing Institute of Technology, 2002.9 ~ 2006.7
=== {{colour c="green" text="Research Areas"}} ===
~- Protein - protein interaction (PPI) network
~- Protein structure alignment
~- Protein - ligand interaction
~- Complex networks
=== {{colour c="green" text="Award and Honors"}} ===
~- “Three goods” Student in AMSS, 2007
~- Beijing Outstanding Graduates, 2006
~- Honorable Prize in Mathematical Contest in Modeling held by American, 2005
~- Second class Prize in CUMCM, 2005
~- Second class Prize in CUMCM, 2004
~- First class Prize in Chinese Mathematical Olympiad in Senior, 2002
=== {{colour c="green" text="Interests"}} ===
~- Sports, such as basketball, ping-pang, and so on
~- Reading science fiction
----
=== Links ===
~- [[http://www.madio.net 矩阵论坛]]
~- [[http://stommel.tamu.edu/~baum/toolboxes.html Matlab toolbox]]
~- [[http://www.ctex.org CTEX.ORG]]
~- [[http://mathworld.wolfram.com/ Mathworld]]

Revision [3184]

Edited on 2008-04-02 18:41:59 by XianwenRen
Deletions:
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html>
<head>
<title>ZHANGroup: Jiguang Wang</title>
<base href="http://zhangroup.aporc.org/" />
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
<meta name="keywords" content="zhangroup, operations research, bioinformatics" />
<meta name="description" content="Homepage of ZHANGroup" />
<link rel="stylesheet" type="text/css" href="css/wikka.css" />
<link rel="stylesheet" type="text/css" href="css/print.css" media="print" />
<link rel="icon" href="images/favicon.ico" type="image/x-icon" />
<link rel="shortcut icon" href="images/favicon.ico" type="image/x-icon" />
<link rel="alternate" type="application/rss+xml" title="ZHANGroup: revisions for JiguangWang (RSS)" href="http://zhangroup.aporc.org/JiguangWang/revisions.xml" />
<link rel="alternate" type="application/rss+xml" title="ZHANGroup: recently edited pages (RSS)" href="http://zhangroup.aporc.org/JiguangWang/recentchanges.xml" />
</head>
<body >
<div class="header">
<h2>ZHANGroup : <a href="http://zhangroup.aporc.org/JiguangWang/backlinks" title="Display a list of pages linking to JiguangWang">JiguangWang</a></h2>
<a href="http://zhangroup.aporc.org/HomePage" title="">HomePage</a> ::
<a href="http://zhangroup.aporc.org/IntranetPortal" title="">Intranet</a> :: <a href="http://zhangroup.aporc.org/CategoryCategory" title="">Categories</a> :: <a href="http://zhangroup.aporc.org/PageIndex" title="">Index</a> :: <a href="http://zhangroup.aporc.org/RecentChanges" title="">Changes</a> :: <a href="http://zhangroup.aporc.org/UserSettings" title="">Preferences/Logout</a> :: You are <a class="missingpage" href="http://zhangroup.aporc.org/XianwenRen/edit" title="Create this page">XianwenRen</a>
</div>
<div class="page" ondblclick="document.location='http://zhangroup.aporc.org/JiguangWang/edit';" >
<img src="images/users/wjg3.jpg" alt="...." style="float: left; margin: 1.0%; padding: 0.5%;" /><br />
<br />
<h1> Jiguang Wang</h1>
<br />
<a class="ext" href="http://www.amss.ac.cn">Academy of Mathematics and Systems Science</a><br />
<a class="ext" href="http://www.gucas.ac.cn/gscascn/index.aspx">Graduate University of Chinese Academy of Science</a>, China<br />
<br />
<br />
Institute of Applied Mathematic <br />
Academy of Mathematics and Systems Science<br />
Chinese Academy of Science <br />
<br />
<br />
<br />
<br />
<br />
<ul><li> <span class="notes">Name:</span> Jiguang Wang
</li><li> <span class="notes">Date of birth:</span> October 1984
</li><li> <span class="notes">E-mail:</span> <a class="ext" href="mailto:bobbit-1@163.com">bobbit-1@163.com</a>
</li><li> <span class="notes">My blog:</span> <a class="ext" href="http://www.blog.163.com/bobbit-1/">http://www.blog.163.com/bobbit-1/</a></li></ul>
<br />
<br />
<br />
<hr />
<h4> <span style="color: green; "> Educational Background </span> </h4>
<br />
<ul><li> Ph.D. expected, 2011.7, Academy of Mathematics & System Sciences, CAS, 2006.9 ~ now
</li><li> B.A., Beijing Institute of Technology, 2002.9 ~ 2006.7</li></ul>
<br />
<h4> <span style="color: green; ">Research Areas</span> </h4>
<br />
<ul><li> Protein - protein interaction (PPI) network
</li><li> Protein structure alignment
</li><li> Protein - ligand interaction
</li><li> Complex networks</li></ul>
<br />
<h4> <span style="color: green; ">Award and Honors</span> </h4>
<br />
<ul><li> “Three goods” Student in AMSS, 2007
</li><li> Beijing Outstanding Graduates, 2006
</li><li> Honorable Prize in Mathematical Contest in Modeling held by American, 2005
</li><li> Second class Prize in CUMCM, 2005
</li><li> Second class Prize in CUMCM, 2004
</li><li> First class Prize in Chinese Mathematical Olympiad in Senior, 2002</li></ul>
<br />
<h4> <span style="color: green; ">Interests</span> </h4>
<br />
<ul><li> Sports, such as basketball, ping-pang, and so on
</li><li> Reading science fiction</li></ul>
<br />
<hr />
<br />
<h4> Links </h4>
<br />
<ul><li> <a class="ext" href="http://www.madio.net">矩阵论坛</a>
</li><li> <a class="ext" href="http://stommel.tamu.edu/~baum/toolboxes.html">Matlab toolbox</a>
</li><li> <a class="ext" href="http://www.ctex.org">CTEX.ORG</a>
</li><li> <a class="ext" href="http://mathworld.wolfram.com/">Mathworld</a></div>
<div class="footer">
<form action="http://zhangroup.aporc.org/TextSearch" method="get">
<a href="http://zhangroup.aporc.org/JiguangWang/edit" title="Click to edit this page">Edit page</a> ::
<a href="http://zhangroup.aporc.org/JiguangWang/history" title="Click to view recent edits to this page">Page History</a> ::
<a href="http://zhangroup.aporc.org/JiguangWang/revisions" title="Click to view recent revisions list for this page">2008-01-03 21:42:35</a> <a href="http://zhangroup.aporc.org/JiguangWang/revisions.xml" title="Click to view recent page revisions in XML format."><img src="images/xml.png" width="36" height="14" align="middle" style="border : 0px;" alt="XML" /></a> ::
Owner: <a href="http://zhangroup.aporc.org/JiguangWang" title="">JiguangWang</a> ::
<a href='http://zhangroup.aporc.org/JiguangWang/referrers' title='Click to view a list of URLs referring to this page.'>Referrers</a> ::
Search: <input name="phrase" size="15" class="searchbox" />
</form>
</div>
<div class="smallprint">
<a class="ext" href="http://validator.w3.org/check/referer">Valid XHTML 1.0 Transitional</a> ::
<a class="ext" href="http://jigsaw.w3.org/css-validator/check/referer">Valid CSS</a> ::
Powered by <a class="ext" href="http://wikkawiki.org/">Wikka Wakka Wiki 1.1.6.2</a></div>
<div class="smallprint">Page was generated in 0.0428 seconds</div>
</body>
</html>

Revision [3178]

The oldest known version of this page was created on 2008-04-01 22:44:14 by XianwenRen
Valid XHTML :: Valid CSS: :: Powered by WikkaWiki