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This is an old revision of ShihuaZhang made by ShihuaZhang on 2007-10-19 13:15:23.

 

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Shihua Zhang


Shihua Zhang is a second year Ph.D. student in Operations Research of the Institute
of Applied Mathematics, www.amss.ac.cn AMSS, at CAS. He also received the B.S. degree in Applied
Mathematics from the University of Yunnan, Kunming, China.

His general areas of research have been Operational research, Machine learning, and
Mathematical Programming with applications in Bioinformatics and Systems Biology,
Complex network. He has published over 15 technical papers in the refereed journals
and conference proceedings, such as Proteomics, Bioinformatics, Computational Biology
and Chemistry, BMC Structural Biology, Physical Review E, European Physical Journal B,
Physica A as well as ICIC, IEEE_ICDM, IEEE_EMBC, and LSMS.

Institute of Applied Mathematics
www.amss.ac.cn Academy of Mathematics and Systems Science, Chinese Academy of Science
Graduate University of Chinese Academy of Science, China


Educational Background


Research Areas and Interests



Publications


  1. Shihua Zhang, Rui-Sheng Wang and Xiang-Sun Zhang. Uncovering fuzzy community structure in complex networks. Physical Review E, 76, 046103, 2007.
  • Shihua Zhang, Guanxu Jin, Xiang-Sun Zhang and Luonan Chen. Discovering functions and revealing mechanisms at molecular level from biological networks. Proteomics, 7(16), 2856-69, 2007.
  • Zhenping Li*, Shihua Zhang*, Yong Wang, Xiang-Sun Zhang and Luonan Chen. Alignment of molecular networks by integer quadratic programming. Bioinformatics, doi:10.1093/bioinformatics/btm156. (*Co-first authors).
  • Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Graph kernels, hierarchical clustering, network community structure: experiment and comparative analysis. Eur. Phys. J. B, 57, 67-74, 2007.
  • Shihua Zhang, Ruisheng Wang, and Xiang-Sun Zhang. Identification of Overlapping Community Structure in Complex Networks Using Fuzzy c-means Clustering. Physica A: Statistical Mechanics and its Applications, 374(1), 483-490, 2007.
  • Shihua Zhang, Xue-Mei Ning and Xiang-Sun Zhang. Identification of functional modules in a PPI network by clique percolation clustering. Computational biology and chemistry, 30(6), 445-451, 2006.
  • Shihua Zhang, Hong-Wei Liu, Xue-Mei Ning and Xiang-Sun Zhang. A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks. ICDMW, 130-135, Sixth IEEE International Conference on Data Mining-Workshops (ICDMW'06), 2006. (Acceptance Ratio: 28.0%)
  • Luonan Chen, Ling-Yun Wu, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. Revealing Divergent Evolution, Identifying Circular Permutations and Detecting Active-Sites by Protein Structure Comparison. BMC Structural Biology, 2006, 6:18.
  • Shihua Zhang, Xue-Mei Ning, Hong-Wei Liu, and Xiang-Sun Zhang. Prediction of protein complexes based on protein interaction data and functional annotation data using kernel methods. Lecture Notes in Bioinformatics, 4115, 514-524, 2006.
  • Zhenping Li, Yong Wang, Shihua Zhang, Xiang-sun Zhang and Luonan Chen. Alignment of Protein Interaction Networks by Integer Quadratic Programming. IEEE EMBC06, SaD03.4, 5527-5530, 2006.
  • Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Yong Wang, Shihua Zhang and Xiang-Sun Zhang. Comparison of Protein Structures by Multi-Objective Optimization. Genome Informatics, 16(2), 114-124, 2005.
  • Shihua Zhang, De-Gang Liu and Xiang-Sun Zhang. A framework for structural similarity search in proteins. ISORA05, Lecture Notes in Operations Research, 5, 285-295, 2005.
  • Shihua Zhang and Xiang-Sun Zhang. Visualization of conformational space based on CA-CA distance. Chinese journal of Bioinformatics, 4, 153-156, 2006.


Index and Journals





How to


"The whole of science is nothing more than a refinement of everyday thinking." ——Einstein

"In science, the important thing is to modify and change one’s ideas as science advances."——Herbert Spencer (1820–1903)

"The good life is one inspired by love and guided by knowledge." ——Betrand Russell

"The difficulty lies, not in the new ideas, but in escaping the old ones, which ramify, for those brought up as most of us have been, into every corner of our minds.." ——John Maynard Keynes (1883 - 1946)




 

Rui-Sheng Wang was born on 7th, Dec., 1978 in Xingtai, Hebei Province, China. She received her B.S. and M.S. Degrees from College of Mathematics & Computer Sciences, Hebei University, and received her Ph.D Degree from Academy of Mathematics & Systems Science, Chinese Academy of Sciences. Her research interests, previously within the areas of fuzzy information processing and nonadditive measure theory, have extended to Combinatorial Optimization and Bioinformatics.

Educational Background

Yunnan University (Kunming, Yunnan, China)

Research Interests


Selected Publications

  1. Clustering complex networks and biological networks by Nonnegative Matrix Factorization with various similarity measures
    • Rui-Sheng Wang, Shihua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
    • Neurocomputing, in review



Research Projects



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