Dr. Rui-Sheng Wang

王瑞省 博士

School of Information, Renmin University of China
Address: No.59, Zhongguancun Street, Beijing 100872, China
Tel: 86-10-62571860
Email: wrs@ruc.edu.cn

[my CV]

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Rui-Sheng Wang was born on 7th, Dec., 1978 in Xingtai, Hebei Province, China. She received her B.S. and M.S. Degrees from College of Mathematics & Computer Sciences, Hebei University, and received her Ph.D Degree from Academy of Mathematics & Systems Science, Chinese Academy of Sciences. Her research interests, previously within the areas of fuzzy information processing and nonadditive measure theory, have extended to Combinatorial Optimization and Bioinformatics.

Educational Background

• 1995.9 - 1999.7, B.S. in Applied Mathematics, Department of Mathematics, Hebei University.
• 1999.9 - 2002.7, M.S. in Applied Mathematics, College of Mathematics & Computer Sciences, Hebei University.
• 2002.9 - 2005.7, Ph.D. in Operation Research and Control theory, Academy of Mathematics & Systems Science, CAS.

Research Interests

• Bioinformatics
  • Functional modules in molecular networks
  • Gene/transcription regulatory networks
  • Protein interaction networks, signaling pathways
  • Tag SNP / Haplotype inference and reconstruction
• Complex networks
  • Community structure in complex networks

Selected Publications

1. Clustering complex networks and biological networks by Nonnegative Matrix Factorization with various similarity measures
   • Rui-Sheng Wang, Shihua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
   • Neurocomputing, accept
2. Uncovering signal transduction networks from high-throughput data by integer linear programming
   • Xing-Ming Zhao, Rui-Sheng Wang, Luonan Chen, Kazuyuki Aihara
   • Nucleic Acids Research, 36, e48, 2008
3. Quantitative function for community detection
   • Zhenping Li, Shihua Zhang, Rui-Sheng Wang, Xiang-Sun Zhang and Luonan Chen
   • Physical Review E, 77, 036109, 2008.
4. Detecting community structure in complex networks by optimal rearrangement clustering
   • Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
   • PAKDD 2007 workshop on Data Mining in Biomedical Applications, Lecture Notes in Artificial Intelligence, 4819,119-130, 2007
5. Analysis on multi-domain cooperation for predicting protein-protein interactions
   • Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
   • BMC Bioinformatics, 8:391, 2007
6. Inferring transcriptional interactions and regulator activities from experimental data
   • Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen
   • Molecules and Cells, 24(3), 307-315, 2007
7. Inferring transcriptional regulatory networks from high-throughput data
   • Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
   • Bioinformatics, 23, 3056-3064, 2007
8. Uncovering fuzzy community structure in complex networks
   • Shihua Zhang, Rui-Sheng Wang, Xiang-Sun Zhang
   • Physical Review E, 76, 046103, 2007
9. Identifying modules in complex networks by a graph-theoretical method and its application in protein interaction networks
   • Rui-Sheng Wang, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen
   • ICIC2007, Lecture Notes in Artificial Intelligence, 4682, 1090-1101, 2007.
10. Identification of overlapping community structure in complex networks using fuzzy c-means clustering
    • Shihua Zhang, Rui-Sheng Wang, and Xiang-Sun Zhang
    • Physica A, 2007, 374, 483–490
11. A Markov chain model for haplotype assembly by SNP fragments
    • Rui-Sheng Wang, Ling-Yun Wu, Xiang-Sun Zhang and Luonan Chen
    • Genome Informatics, 2006, 17(2), 162-171
12. The haplotype assembly model with genotype information and local exhaustive search algorithm
    • Ying Wang, Enmin Feng, Rui-Sheng Wang, Dan Zhang
    • Computational Biology and Chemistry, 2007, 31(4): 288-293
13. Minimum conflict individual haplotyping from SNP fragments and related genotype
    • Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, and Wei Zhang
    • Evolutionary Bioinformatics, 2006, 2, 271-280
14. Models and algorithms for the haplotyping problem
    • Xiang-Sun Zhang, Rui-Sheng Wang, Ling-Yun Wu, and Luonan Chen
    • Current Bioinformatics, 2006,1(1), 105-114
15. Haplotype reconstruction from SNP fragments by minimum error correction
    • Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, and Xiang-Sun Zhang
    • Bioinformatics, 2005, 21(10), pp: 2456-2462
16. Haplotype inference by pure parsimony via genetic algorithm
    • Rui-Sheng Wang, Xiang-Sun Zhang, and Li Sheng
    • ISORA2005, Lecture Notes in Operations Research, 5, pp. 308-318, 2005
17. Haplotype assembly from weighted SNP fragments
    • Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang, and Xiang-Sun Zhang
    • Computational Biology and Chemistry, 2005, 29(4), 281-287
18. Sequences of fuzzy-valued Choquet integrable function
    • Rui-Sheng Wang, and Ming-Hu Ha
    • Advances in Soft Computing, 40, 149-158, 2007
19. Choquet integrals on L-fuzzy sets
    • Rui-Sheng Wang, Li-Min Wang, and Ming-Hu Ha
    • The Journal of Fuzzy Mathematics, 2006, 14(1), 151-164
20. On Choquet integrals of fuzzy-valued functions
    • Rui-Sheng Wang, and Ming-Hu Ha
    • The Journal of Fuzzy Mathematics, 2006, 14(1), 89-102

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Research Projects

• Research on Several Difficult Bioinformatics Problems by Using OR Methodologies (2005-2007)
  • National Natural Science Foundation of China (NSFC), Grant No. 10471141, Joint Inverstigator
• Research on Models and Algorithms of Haplotype Inference Problem in Bioinformatics (2006-2008).
  • National Natural Science Foundation of China (NSFC), Grant No. 60503004, Joint Inverstigator
• Several Fundamental Problems in Complex Networks (2007)
  • Research Foundation of Renmin University of China, Grant No. 06XNB054, Principal Investigator
• Research on theory and algorithms of community detection in complex networks (2008-2010)
  • National Natural Science Foundation of China (NSFC), Grant No. 10701080, Principal Investigator

Useful Links

• Related Journals

Quotations

• All models are wrong, but some are useful
  George E.P. Box
• Nothing in biology makes sense except in the light of evolution
  T. Dobzhansky