Resources of Bioinformatics

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Software

Protein Structure Alignment

• Samo (protein Structure Alignment tool based on Multiple Objective optimization)

Haplotype Inference

• HMC (Haplotype inference tool based on Markov Chain model)
• PTG (Parsimonious Tree-Grow method for haplotype inference)

Gene Regulatory Network Inference

• GRNInfer (Gene Regulatory Network Inference Tool)
• GNTInfer (Gene Network reconstruction tool with compound Targets)

Protein-Protein Interaction Inference

• DeterminePPI (Inferring protein-protein interactions by parsimony principle)

Molecular Networks Alignment

• MNAligner (Molecular Network Aligner)

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Supplementary Materials

Protein-Protein Interaction Networks

• Identification of functional modules in PPI network by clique percolation clustering
• Alignment of Protein Interaction Networks by Integer Quadratic Programming

Protein Structure Comparison

• Evaluating Protein Similarity From Coarse Structures

From Protein Surface Pattern to Function

• PSN (Predicting Gene Ontology functions from Protein's Regional Surface Structures)

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Talks

• ZG-TK-03-01 Protein Structure Prediction & Alignment (Simplified version)
• ZG-TK-03-02 Reconstruction of DNA Sequencing by Hybridization
• ZG-TK-03-03 Self-organizing Map (SOM) in Protein Folding Based on HP Model
• ZG-TK-03-04 Center of Bioinformatics at AMSS (in Chinese)
• ZG-TK-05-01 Deterministic Optimization Methods For the Haplotyping Problem

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Internal Lectures

• ZG-LC-03-01 The Haplotype Blocks Problems
• ZG-LC-03-02 Structure Alignment of Protein
• ZG-LC-03-03 Protein Structure Alignment
• ZG-LC-03-04 Protein Threading for Structure Prediction
• ZG-LC-03-05 Protein Threading

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All Files

	Attachment	Size	Date Added
	ZG-LC-03-01.ppt	305 KB	5/08/2005 8:58 pm
	ZG-LC-03-02.ppt	753.5 KB	5/08/2005 8:59 pm
	ZG-LC-03-03.ppt	1.62 MB	5/08/2005 9:01 pm
	ZG-LC-03-04.ppt	822.5 KB	5/08/2005 9:01 pm
	ZG-LC-03-05.ppt	220 KB	5/08/2005 9:01 pm
	ZG-TK-03-01.ppt	1.32 MB	5/08/2005 9:01 pm
	ZG-TK-03-01a.ppt	1.79 MB	5/08/2005 9:01 pm
	ZG-TK-03-02.ppt	642 KB	5/08/2005 9:02 pm
	ZG-TK-03-03.ppt	1.38 MB	5/08/2005 9:02 pm
	ZG-TK-03-04.ppt	1.23 MB	5/08/2005 9:02 pm
	ZG-TK-05-01.pdf	889.82 KB	5/27/2005 8:52 am

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