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This is an old revision of PubBioinformatics2012 made by HuijiaLi on 2012-11-28 17:34:49.


Publications - Bioinformatics 2012

2002-2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 |2015

Books & Chapters

Accepted Papers

  1. Zhong-Yuan Zhang
    Community Structure Detection in Social Networks Based on Dictionary Learning.
    Science China: Information Science, in press.

Refereed Journal Papers

  1. Wei Song*, Jiguang Wang*, Ying Yang, Nai-He Jing, Xiang-Sun Zhang, Luonan Chen, Jia-Rui Wu
    Rewiring drug-activated p53-regulatory network from suppressing to promoting tumorigenesis.
    Journal of Molecular Cell Biology, doi:10.1093/jmcb/mjs029 (* co-first authors).
  1. Xiang-Sun Zhang, Zhenping Li, Rui-Sheng Wang, and Yong Wang
    A combinatorial model and algorithm for globally searching community structure in complex networks
    Journal of Combinatorial Optimization, 23(4): 425-442, 2012.
  1. Hui-Jia Li, Yong Wang, Ling-Yun Wu, Junhua Zhang and Xiang-Sun Zhang
    Potts model based on a Markov process computation solves the community structure problem effectively
    Physical Review E, 86: 016109, 2012.
  1. Hui-Jia Li, Yong Wang, Ling-Yun Wu, Zhi-Ping Liu, Luonan Chen and Xiang-Sun Zhang
    Community structure detection based on Potts model and network's spectral characterization
    Europhysics Letters, 97: 48005, 2012.
  1. Hui-Jia Li, Junhua Zhang, Zhi-Ping Liu, Luonan Chen and Xiang-Sun Zhang
    Identify overlapping communities in social networks using multi-scale local information expansion
    European Physical Journal B, 85(6): 190, 2012.
  1. Zhi-Ping Liu, Yong Wang. Xiang-Sun Zhang, Luonan Chen.
    Network-based analysis of complex diseases
    IET Systems Biology, 6(1): 122-133, 2012.
  1. Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen.
    Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs.
    BMC Bioinformatics, 13(Suppl 7): S6, 2012.
  1. Lin Wang, Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen.
    Prediction of hot spots in protein interfaces using a random forest model with hybrid features
    Protein Engineering Design and Selection, 25(3):119-126, 2012.
  1. Xianwen Ren, Yong Wang, Jiguang Wang and Xiang-Sun Zhang.
    A unified computational model for revealing and predicting subtle subtypes of cancers
    BMC Bioinformatics 13:70, 2012.
  1. Zhong-Yuan Zhang
    Divergence Functions of Nonnegative Matrix Factorization: A Comparison Study.
    Communications in Statistics - Simulation and Computation, 40: 1594-1612, 2012.
  1. Yong Wang, Xiang-Sun Zhang, and Luonan Chen.
    Modelling biological systems from molecules to dynamical networks.
    BMC Systems Biology, 6(Suppl 1):S1, 2012.
  1. Chen Chen, Jun-Fei Zhao, Qiang Huang, Rui-Sheng Wang, and Xiang-Sun Zhang.
    Inferring domain-domain interactions from protein-protein interactions in the complex network conformation.
    BMC Systems Biology, 6(Suppl 1):S7, 2012.
  1. Yong Wang, Qiao-Feng Wu, Chen Chen, Ling-Yun Wu, Xian-Zhong Yan, Shu-Guang Yu, Xiang-Sun Zhang, and Fan-Rong Liang.
    Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection.
    BMC Systems Biology, 6(Suppl 1):S15, 2012.
  1. Yongcui Wang, Xianwen Ren, Chunhua Zhang, Naiyang Deng, Xiang-Sun Zhang.
    Interrogating noise in protein sequences from the perspective of protein–protein interactions prediction
    Journal of Theoretical Biology 315(21): 64-70, 2012.

Proceedings Papers

  1. Zhi-Ping Liu, Wanwei Zhang, Katsuhisa Horimoto, Luonan Chen.
    A Gaussian Graphical Model for Identifying Significantly Responsive Regulatory Networks from Time Series Gene Expression Data.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 142-147.
  1. Xinjian Zhuo.
    Analysis of a HBV Infection Model With Non-cytolytic Cure Process.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 148-151.
  1. Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang.
    CNetA: Network alignment by combining biological and topological features.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 220-225.
  1. Changhe Fu, Ling Jing, Su Deng, Guangxu Jin.
    Identification of Oncogenic Genes for Colon Adenocarcinoma from Genomics Data.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 263-266.
  1. Junhua Zhang, Shihua Zhang, Yong Wang, Junfei Zhao, Xiang-Sun Zhang.
    Identifying Mutated Core Modules in Glioblastoma by Integrative Network Analysis.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 304-309.
  1. Xinxin Wang, Zhana Duren, Chao Zhang, Lin Chen, Yong Wang.
    Clinical Data Analysis Reveals Three Subytpes of Gastric Cancer.
    2012 IEEE International Conference on Systems Biology (ISB), pp. 315-320.
  1. Hui-Jia Li, Zhi-Ping Liu, Luonan Chen and Xiang-Sun Zhang
    Identification of overlapping communities in protein interaction networks using multi-scale local information expansion.
    2012 10th World Congress on Intelligent Control and Automation (WCICA), pp. 5071-5076

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