Revision history for PubBioinformatics2011


Revision [6610]

Last edited on 2013-07-08 13:53:04 by LingyunWu
Additions:
~1) Shihua Zhang, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou --- **[[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 A novel computational framework for simultaneous integration of multiple functional genomic data to identify microRNA-gene regulatory modules.]]** ---//Bioinformatics (ISMB2011)//, 27:i401-i409, 2011. ---SCI; Funding: NSFC(11001256), CAS(kjcs-yw-s7)
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang --- **[[http://www.biomedcentral.com/1752-0509/5/S1/S11 Two-stage flux balance analysis of metabolic networks for drug target identification.]] **--- //BMC Systems Biology//, 5(Suppl 1):S11, 2011. ---SCI; Funding: NSFC(10631070, 60873205, 10701080)
~1) Yongcui Wang, Yong Wang, Zhixia Yang, Nai-Yang Deng --- **[[http://www.biomedcentral.com/1752-0509/5/S1/S6 Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context.]] **--- //BMC Systems Biology//, 5(Suppl 1):S6, 2011. ---SCI; Funding: NSFC(10801131, 10801112, 10971223, 11071252)
~1) Xianwen Ren, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/12/409 Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation]]**--- BMC Bioinformatics 12:409, 2011. ---SCI; Funding: NSFC(60873205, 10801131, 10631070, 10971223, 11071252), CAS(kjcx-yw-s7)
Deletions:
~1) Shihua Zhang, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou --- **[[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 A novel computational framework for simultaneous integration of multiple functional genomic data to identify microRNA-gene regulatory modules.]]** ---//Bioinformatics (ISMB2011)//, 27:i401-i409, 2011.
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang --- **[[http://www.biomedcentral.com/1752-0509/5/S1/S11 Two-stage flux balance analysis of metabolic networks for drug target identification.]] **--- //BMC Systems Biology//, 5(Suppl 1):S11, 2011
~1) Yongcui Wang, Yong Wang, Zhixia Yang, Nai-Yang Deng --- **[[http://www.biomedcentral.com/1752-0509/5/S1/S6 Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context.]] **--- //BMC Systems Biology//, 5(Suppl 1):S6, 2011
~1) Xianwen Ren, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/12/409 Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation]]**--- BMC Bioinformatics 12:409, 2011.

Revision [6609]

Edited on 2013-07-08 13:38:38 by LingyunWu
Additions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://bioinformatics.oxfordjournals.org/content/27/22/3173 An Efficient Network Querying Method Based on Conditional Random Fields.]] **---//Bioinformatics//, 27 (22): 3173-3178, 2011. doi: 10.1093/bioinformatics/btr524. ---SCI; Funding: NSFC(60970091, 60873205), CAS(kjcx-yw-s7)
~1) Jiguang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, 39(13):e87, 2011. ---SCI; Funding: NSFC(60873205, 10801131, 60970091), CAS(kjcs-yw-s7)
Deletions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://bioinformatics.oxfordjournals.org/content/27/22/3173 An Efficient Network Querying Method Based on Conditional Random Fields.]] **---//Bioinformatics//, 27 (22): 3173-3178, 2011. doi: 10.1093/bioinformatics/btr524.
~1) Jiguang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, 39(13):e87, 2011.

Revision [5822]

Edited on 2012-01-14 11:50:45 by LingyunWu
Deletions:
=== Accepted Papers ===
~1) Xiang-Sun Zhang, Zhenping Li, Rui-Sheng Wang, and Yong Wang ---**[[http://www.springerlink.com/content/v531g352776u1011/ A combinatorial model and algorithm for globally searching community structure in complex networks]]**--- //Journal of Combinatorial Optimization//, in press, 2011.
~1) Zhong-Yuan Zhang --- **Community Structure Detection in Social Networks Based on Dictionary Learning.** --- //Science China: Information Science//, in press, 2011.
~1) Zhong-Yuan Zhang --- **Divergence Functions of Nonnegative Matrix Factorization: A Comparison Study.** --- //Communications in Statistics - Simulation and Computation//, in press, 2011.
~1) Zhi-Ping Liu, Yong Wang. Xiang-Sun Zhang, Luonan Chen. --- **Network-based analysis of complex diseases.** --- //IET Systems Biology//, in press.

Revision [5772]

Edited on 2011-12-06 09:30:14 by HuangQiang
Additions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://bioinformatics.oxfordjournals.org/content/27/22/3173 An Efficient Network Querying Method Based on Conditional Random Fields.]] **---//Bioinformatics//, 27 (22): 3173-3178, 2011. doi: 10.1093/bioinformatics/btr524.
Deletions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://bioinformatics.oxfordjournals.org/content/27/22/3173 An Efficient Network Querying Method Based on Conditional Random Fields.]] **---//Bioinformatics//,(2011) 27 (22): 3173-3178. doi: 10.1093/bioinformatics/btr524.

Revision [5771]

Edited on 2011-12-06 09:29:40 by HuangQiang
Additions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://bioinformatics.oxfordjournals.org/content/27/22/3173 An Efficient Network Querying Method Based on Conditional Random Fields.]] **---//Bioinformatics//,(2011) 27 (22): 3173-3178. doi: 10.1093/bioinformatics/btr524.
Deletions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://bioinformatics.oxfordjournals.org/content/27/22/3173 An Efficient Network Querying Method Based on Conditional Random Fields.]] **---//Bioinformatics//, in press.

Revision [5770]

Edited on 2011-12-06 09:28:30 by HuangQiang
Additions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**[[http://bioinformatics.oxfordjournals.org/content/27/22/3173 An Efficient Network Querying Method Based on Conditional Random Fields.]] **---//Bioinformatics//, in press.
Deletions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**An Efficient Network Querying Method Based on Conditional Random Fields. **---//Bioinformatics//, in press.

Revision [5724]

Edited on 2011-11-29 04:13:23 by GuangxuJin
Additions:
~1) Guangxu Jin, Hong Zhao, Xiaobo Zhou, Stephen T.C. Wong --- **[[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3117391/?tool=pubmed An enhanced Petri-net model to predict synergistic effects of pairwise drug combinations from gene microarray data.]] **--- //Bioinformatics//, 27(13):i310-6, 2011.

Revision [5723]

Edited on 2011-11-29 04:09:33 by GuangxuJin
Additions:
~1) Guangxu Jin, Changhe Fu, Hong Zhao, Kemi Cui, Jenny Chang, Stephen T.C. Wong --- **[[http://www.ncbi.nlm.nih.gov/pubmed/22108825 A novel method of transcriptional response analysis to facilitate drug repositioning for cancer therapy.]] **--- //Cancer Res//, doi:10.1158/0008-5472.CAN-11-2333, 2011.
Deletions:
~1) Guangxu Jin, Changhe Fu, Hong Zhao, Kemi Cui, Jenny Chang, Stephen T.C. Wong --- **[[http://cancerres.aacrjournals.org/content/early/2011/11/21/0008-5472.CAN-11-2333.long A novel method of transcriptional response analysis to facilitate drug repositioning for cancer therapy.]] **--- //Cancer Res//, doi:10.1158/0008-5472.CAN-11-2333, 2011.

Revision [5722]

Edited on 2011-11-29 04:07:50 by GuangxuJin
Additions:
~1) Guangxu Jin, Changhe Fu, Hong Zhao, Kemi Cui, Jenny Chang, Stephen T.C. Wong --- **[[http://cancerres.aacrjournals.org/content/early/2011/11/21/0008-5472.CAN-11-2333.long A novel method of transcriptional response analysis to facilitate drug repositioning for cancer therapy.]] **--- //Cancer Res//, doi:10.1158/0008-5472.CAN-11-2333, 2011.

Revision [5716]

Edited on 2011-11-20 09:49:27 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen. ---**[[http://doc.aporc.org/wiki/MTBPPI Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis]]. **--- Leture Notes in Bioinformatics, 6840: pp. 91-96, 2011
Deletions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen. ---**[[ Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis]]. **--- Leture Notes in Bioinformatics, 6840: pp. 91-96, 2011

Revision [5715]

Edited on 2011-11-20 09:46:47 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen. ---**[[ Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis]]. **--- Leture Notes in Bioinformatics, 6840: pp. 91-96, 2011
Deletions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen: ---**[[ Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis]]. **--- Leture Notes in Bioinformatics, 6840: pp. 91-96, 2011

Revision [5714]

Edited on 2011-11-20 09:46:27 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen: ---**[[ Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis]]. **--- Leture Notes in Bioinformatics, 6840: pp. 91-96, 2011
Deletions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen: ---**[[ Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis]]. **--- Leture Notes in Bioinformatics, 6840: 91 -- 96, 2011

Revision [5713]

Edited on 2011-11-20 09:45:42 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen: ---**[[ Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis]]. **--- Leture Notes in Bioinformatics, 6840: 91 -- 96, 2011
Deletions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen: ---**[[ Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis.]]. **--- Leture Notes in Bioinformatics, 6840: 91 -- 96

Revision [5712]

Edited on 2011-11-20 09:44:25 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen: ---**[[ Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis.]]. **--- Leture Notes in Bioinformatics, 6840: 91 -- 96
Deletions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen: Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis. Leture Notes in Bioinformatics, 6840: 91 -- 96

Revision [5711]

Edited on 2011-11-20 09:39:03 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K.K. Leung, Xiang-Sun Zhang, Stephen K.W. Tsui and Luonan Chen: Inferring protein-protein interactions based on sequences and interologs in Mycobacterium tuberculosis. Leture Notes in Bioinformatics, 6840: 91 -- 96

Revision [5669]

Edited on 2011-11-04 11:02:14 by XianwenRen
Additions:
~1) Xianwen Ren, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**[[http://www.biomedcentral.com/1471-2105/12/409 Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation]]**--- BMC Bioinformatics 12:409, 2011.
Deletions:
~1) Xianwen Ren, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**Improving accuracy of protein-protein interaction prediction by considering the converse problem**---//BMC Bioinformatics//, in press.

Revision [5593]

Edited on 2011-10-17 10:09:47 by XianwenRen
Additions:
~1) Xianwen Ren, Yongcui Wang, Yong Wang, Nai-Yang Deng and Xiang-Sun Zhang. ---**Improving accuracy of protein-protein interaction prediction by considering the converse problem**---//BMC Bioinformatics//, in press.

Revision [5589]

Edited on 2011-10-13 01:47:49 by RuishengWang
Additions:
~1)Yong-Cui Wang, Xian-Wen Ren, Chun-Hua Zhang, Nai-Yang Deng, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033124 Evaluating the Denoising Techniques in Protein-Protein Interaction Prediction]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 78-83
Deletions:
~1)Yong-Cui Wang, Xian-Wen Ren, Chun-Hua Zhang.---**[[files: Evaluating the Denoising Techniques in Protein-Protein Interaction Prediction]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 78-83

Revision [5588]

Edited on 2011-10-13 01:45:40 by RuishengWang
Additions:
~1) Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033155 Identification of Master Regulator Candidates for Diabetes Progression in Goto-Kakizaki Rat by a Computational Procedure]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 197-202
Deletions:
~1) Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto.---**[[files: Identification of Master Regulator Candidates for Diabetes Progression in Goto-Kakizaki Rat by a Computational Procedure]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 197-202

Revision [5587]

Edited on 2011-10-13 01:44:11 by RuishengWang
Additions:
~1)Zhenping Li, Xianman Hu.---**[[http://www.aporc.org/LNOR/14/ISORA2011F18.pdf The Team Orienteering Problem with Capacity
~1) Songyot Nakariyakul, Zhi-Ping Liu, Luonan Chen.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033143 Protein Interaction Prediction for Mouse PDZ Domains Using Dipeptide Composition Features]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 129-132
Deletions:
~1)Zhenping Li, Xianman H.---**[[http://www.aporc.org/LNOR/14/ISORA2011F18.pdf The Team Orienteering Problem with Capacity
~1) Songyot Nakariyakul, Zhi-Ping Liu, Luonan Chen.---**[[files: Protein Interaction Prediction for Mouse PDZ Domains Using Dipeptide Composition Features]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 129-132

Revision [5586]

Edited on 2011-10-13 01:41:15 by RuishengWang
Additions:
~1) Xianwen Ren, Yong Wang, Luonan Chen, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033161 A Linear Programming Model for Identifying Non-Redundant Biomarkers Based on Gene Expression Profiles]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 249-254
Deletions:
~1) Xianwen Ren, Yong Wang, Luonan Chen, Xiang-Sun Zhang.---**[[files: A Linear Programming Model for Identifying Non-Redundant Biomarkers Based on Gene Expression Profiles]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 249-254

Revision [5585]

Edited on 2011-10-13 01:40:41 by RuishengWang
Additions:
~1) Yong Wang, Qiao-Feng Wu, Chen Chen, Xian-Zhong Yan, Shu-Guang Yu, Xiang-Sun Zhang, Fan-Rong Liang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033172 Identifying Biomarkers for Acupuncture Treatment via an Optimization Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 319-326
Deletions:
~1) Yong Wang, Qiao-Feng Wu, Chen Chen, Xian-Zhong Yan, Shu-Guang Yu, Xiang-Sun Zhang, Fan-Rong Liang.---**[[files: Identifying Biomarkers for Acupuncture Treatment via an Optimization Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 319-326

Revision [5584]

Edited on 2011-10-13 01:39:46 by RuishengWang
Additions:
~1) Junhua Zhang, Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033175 A Dynamical Method to Extract Communities Induced by Low or Middle-degree Nodes]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 340-344
Deletions:
~1) Junhua Zhang, Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen.---**[[files: A Dynamical Method to Extract Communities Induced by Low or Middle-degree Nodes]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 340-344

Revision [5583]

Edited on 2011-10-13 01:39:02 by RuishengWang
Additions:
~1) Qiang Huang, Ling-Yun Wu, Ji-Bin Qu, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033177 Analyzing Time-Course Gene Expression Data Using Profile-State Hidden Markov Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 351-355
Deletions:
~1) Qiang Huang, Ling-Yun Wu, Ji-Bin Qu, Xiang-Sun Zhang.---**[[files: Analyzing Time-Course Gene Expression Data Using Profile-State Hidden Markov Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 351-355

Revision [5582]

Edited on 2011-10-13 01:38:15 by RuishengWang
Additions:
~1) Ji-Bin Qu, Xiang-Sun Zhang, Ling-Yun Wu, Yong Wang, Luonan Chen.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033184 Detecting Coherent Local Patterns from Time Series Gene Expression Data by a Temporal Biclustering Method]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 399-404
Deletions:
~1) Ji-Bin Qu, Xiang-Sun Zhang, Ling-Yun Wu, Yong Wang, Luonan Chen.---**[[files: Detecting Coherent Local Patterns from Time Series Gene Expression Data by a Temporal Biclustering Method]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 399-404

Revision [5581]

Edited on 2011-10-13 01:37:28 by RuishengWang
Additions:
~1) Chen Chen, Jun-Fei Zhao, Qiang Huang, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6033181 Inferring Domain-Domain Interactions Using an Extended Parsimony Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 385-389
Deletions:
~1) Chen Chen, Jun-Fei Zhao, Qiang Huang, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[files: Inferring Domain-Domain Interactions Using an Extended Parsimony Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 385-389

Revision [5543]

Edited on 2011-09-12 22:56:21 by HuangQiang
Additions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**An Efficient Network Querying Method Based on Conditional Random Fields. **---//Bioinformatics//, in press.
Deletions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**An Efficient Network Querying Method Based on Conditional Random Fields. **---//Bioinformatics//, accepted.

Revision [5542]

Edited on 2011-09-12 22:55:43 by HuangQiang
Additions:
~1) Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. ---**An Efficient Network Querying Method Based on Conditional Random Fields. **---//Bioinformatics//, accepted.

Revision [5540]

Edited on 2011-09-07 10:24:18 by HuangQiang
Additions:
~1) Songyot Nakariyakul, Zhi-Ping Liu, Luonan Chen.---**[[files: Protein Interaction Prediction for Mouse PDZ Domains Using Dipeptide Composition Features]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 129-132
~1) Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto.---**[[files: Identification of Master Regulator Candidates for Diabetes Progression in Goto-Kakizaki Rat by a Computational Procedure]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 197-202
~1) Xianwen Ren, Yong Wang, Luonan Chen, Xiang-Sun Zhang.---**[[files: A Linear Programming Model for Identifying Non-Redundant Biomarkers Based on Gene Expression Profiles]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 249-254
~1) Yong Wang, Qiao-Feng Wu, Chen Chen, Xian-Zhong Yan, Shu-Guang Yu, Xiang-Sun Zhang, Fan-Rong Liang.---**[[files: Identifying Biomarkers for Acupuncture Treatment via an Optimization Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 319-326
~1) Junhua Zhang, Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen.---**[[files: A Dynamical Method to Extract Communities Induced by Low or Middle-degree Nodes]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 340-344
~1) Qiang Huang, Ling-Yun Wu, Ji-Bin Qu, Xiang-Sun Zhang.---**[[files: Analyzing Time-Course Gene Expression Data Using Profile-State Hidden Markov Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 351-355
~1) Chen Chen, Jun-Fei Zhao, Qiang Huang, Rui-Sheng Wang, Xiang-Sun Zhang.---**[[files: Inferring Domain-Domain Interactions Using an Extended Parsimony Model]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 385-389
~1) Ji-Bin Qu, Xiang-Sun Zhang, Ling-Yun Wu, Yong Wang, Luonan Chen.---**[[files: Detecting Coherent Local Patterns from Time Series Gene Expression Data by a Temporal Biclustering Method]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 399-404
Deletions:
~1)

Revision [5539]

Edited on 2011-09-07 10:11:26 by HuangQiang
Additions:
~1)Yong-Cui Wang, Xian-Wen Ren, Chun-Hua Zhang.---**[[files: Evaluating the Denoising Techniques in Protein-Protein Interaction Prediction]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 78-83
Deletions:
~1)Yong-Cui Wang, Xian-Wen Ren, Chun-Hua Zhang.---**[[ Evaluating the Denoising Techniques in Protein-Protein Interaction Prediction]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 78-83

Revision [5538]

Edited on 2011-09-07 10:11:05 by HuangQiang
Additions:
~1)Yong-Cui Wang, Xian-Wen Ren, Chun-Hua Zhang.---**[[ Evaluating the Denoising Techniques in Protein-Protein Interaction Prediction]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 78-83
Deletions:
~1)Yong-Cui Wang, Xian-Wen Ren, Chun-Hua Zhang.---**[[Evaluating the Denoising Techniques in Protein-Protein Interaction Prediction]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 78-83

Revision [5537]

Edited on 2011-09-07 10:10:26 by HuangQiang
Additions:
~1)Yong-Cui Wang, Xian-Wen Ren, Chun-Hua Zhang.---**[[Evaluating the Denoising Techniques in Protein-Protein Interaction Prediction]].**---2011 IEEE International Conference on Systems Biology (ISB), pp. 78-83
~1)

Revision [5536]

Edited on 2011-09-07 10:01:41 by HuangQiang
Additions:
~1)Hong-Wei Liu.---**[[http://www.aporc.org/LNOR/14/ISORA2011F23.pdf Linear Programming for Portfolio Selection
Deletions:
~1)Hong-Wei Liu.---**[[[http://www.aporc.org/LNOR/14/ISORA2011F23.pdf Linear Programming for Portfolio Selection

Revision [5535]

Edited on 2011-09-07 10:01:00 by HuangQiang
Additions:
~1)Shoujun Xu, Jiguang Wang, Junhua Zhang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/14/ISORA2011F40.pdf Multiple Resolution Community Structure
Analysis]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 334-349

Revision [5534]

Edited on 2011-09-07 09:59:13 by HuangQiang
Additions:
~1)Hong-Wei Liu.---**[[[http://www.aporc.org/LNOR/14/ISORA2011F23.pdf Linear Programming for Portfolio Selection
Based on Fuzzy Decision-Making Theory]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 195-202
~1)Jin-Shan Li, San-qiang Wang, Jia-Rong Gao.---**[[http://www.aporc.org/LNOR/14/ISORA2011F28.pdf Consumer’s Optimal Choice on lp Commodity]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 234-241

Revision [5533]

Edited on 2011-09-07 09:55:52 by HuangQiang
Additions:
~1)Hong-Wei Liu.---**[[http://www.aporc.org/LNOR/14/ISORA2011F06.pdf A Non-monotone Adaptive Trust Region
Algorithm For Nonlinear Equations]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 67-74
~1)Zhenping Li, Xianman H.---**[[http://www.aporc.org/LNOR/14/ISORA2011F18.pdf The Team Orienteering Problem with Capacity
Constraint and Time Window]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 157-163
~1)Xianwen Ren, Yong Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/14/ISORA2011F21.pdf A Flexible Convex Optimization Model for
Semi-supervised Clustering with Instance-level Constraints]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 178-185

Revision [5532]

Edited on 2011-09-07 09:50:27 by HuangQiang
Additions:
~1) Yong Wang, Jiguang Wang, Chen Chen, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/14/ISORA2011F17.pdf A Regularized Optimization Model for
Community Identification in Complex Networks]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 147-156
Deletions:
~1) Junhua Zhang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F60.pdf On Resolution Limit of the Modularity in Community Detection]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 492-499

Revision [5531]

Edited on 2011-09-07 09:48:43 by HuangQiang
Additions:
~1) Jun-Fei Zhao, Jiguang Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/14/ISORA2011F15.pdf A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 133-143
Deletions:
~1) Jun-Fei Zhao, Jiguang Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/APORC/LNOR/14/ISORA2011F15.pdf A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 133-143

Revision [5530]

Edited on 2011-09-07 09:48:15 by HuangQiang
Additions:
~1) Jun-Fei Zhao, Jiguang Wang, Xiang-Sun Zhang.---**[[http://www.aporc.org/APORC/LNOR/14/ISORA2011F15.pdf A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 133-143
Deletions:
~1) Jun-Fei Zhao, Jiguang Wang, Xiang-Sun Zhang.---**[[file://www.aporc.org/APORC/LNOR/14/ISORA2011F15.pdf A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 133-143

Revision [5529]

Edited on 2011-09-07 09:47:44 by HuangQiang
Additions:
~1) Jun-Fei Zhao, Jiguang Wang, Xiang-Sun Zhang.---**[[file://www.aporc.org/APORC/LNOR/14/ISORA2011F15.pdf A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks]].**--- The Tenth International Symposium on Operations Research and Its Applications (ISORA 2011), pp. 133-143
Deletions:
~1)

Revision [5528]

Edited on 2011-09-07 09:44:23 by HuangQiang
Additions:
~1) Junhua Zhang, Xiang-Sun Zhang.---**[[http://www.aporc.org/LNOR/12/ISORA2010F60.pdf On Resolution Limit of the Modularity in Community Detection]].**---The Ninth International Symposium on Operations Research and Its Applications (ISORA’10), pp. 492-499
~1)

Revision [5494]

Edited on 2011-07-30 13:01:16 by ZhipingLiu
Additions:
~1) Jiguang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, 39(13):e87, 2011.
Deletions:
~1) Jiguang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, doi: 10.1093/nar/gkr251, 2011.

Revision [5482]

Edited on 2011-07-15 08:46:18 by JiguangWang
Additions:
~1) Jiguang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, doi: 10.1093/nar/gkr251, 2011.
Deletions:
~1) Ji-Guang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, doi: 10.1093/nar/gkr251, 2011.

Revision [5426]

Edited on 2011-06-22 15:10:26 by ZhipingLiu
Additions:
~1) Zhi-Ping Liu, Yong Wang. Xiang-Sun Zhang, Luonan Chen. --- **Network-based analysis of complex diseases.** --- //IET Systems Biology//, in press.
Deletions:
~1) Zhi-Ping Liu, Yong Wang. Xiang-Sun Zhang, Luonan Chen. --- **Network-based analysis of complex diseases。** --- //IET Systems Biology//, in press.

Revision [5425]

Edited on 2011-06-22 15:09:39 by ZhipingLiu
Additions:
~1) Zhong-Yuan Zhang --- **Nonnegative Matrix Factorization: Models, Algorithms and Applications.** --- Chapter in //Data Minming: Foundations and Intelligent Paradigms 2//, in press, 2011.
~1) Zhong-Yuan Zhang --- **Community Structure Detection in Social Networks Based on Dictionary Learning.** --- //Science China: Information Science//, in press, 2011.
~1) Zhong-Yuan Zhang --- **Divergence Functions of Nonnegative Matrix Factorization: A Comparison Study.** --- //Communications in Statistics - Simulation and Computation//, in press, 2011.
Deletions:
~1) Zhong-Yuan Zhang --- **Nonnegative Matrix Factorization: Models, Algorithms and Applications.** --- Chapter in //DATA MINING: Foundations and Intelligent Paradigms 2//, in press, 2011.
~1) Zhong-Yuan Zhang --- **Community Structure Detection in Social Networks Based on Dictionary Learning.** --- //Science China: Information Science//, in press, 2011. (SCI, IF: 0.387)
~1) Zhong-Yuan Zhang --- **Divergence Functions of Nonnegative Matrix Factorization: A Comparison Study.** --- //Communications in Statistics - Simulation and Computation//, in press, 2011. (SCI, IF: 0.383)

Revision [5424]

Edited on 2011-06-21 22:24:21 by RuishengWang
Additions:
~1) Ruoying Chen, Zhiwang Zhang, Di Wu, Peng Zhang, Xinyang Zhang, Yong Wang, and Yong Shi. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519310005552 Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming.]] **--- //Journal of Theoretical Biology//, Vol. 269, pp. 174--180, 2011.
Deletions:
~1) Ruoying Chen, Zhiwang Zhang, Di Wu, Peng Zhang, Xinyang Zhang, Yong Wang, and Yong Shi. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519310005552 Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming.]] **--- //Journal of Theoretical Biology, Vol. 269, pp. 174--180, 2011.

Revision [5421]

Edited on 2011-06-21 14:43:45 by YongWang
Additions:
~1) Ruoying Chen, Zhiwang Zhang, Di Wu, Peng Zhang, Xinyang Zhang, Yong Wang, and Yong Shi. ---**[[http://www.sciencedirect.com/science/article/pii/S0022519310005552 Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming.]] **--- //Journal of Theoretical Biology, Vol. 269, pp. 174--180, 2011.

Revision [5420]

Edited on 2011-06-21 14:35:11 by YongWang
Additions:
~1) Yong Wang, Xiang-Sun Zhang, and Luonan Chen --- **[[http://www.biomedcentral.com/1752-0509/5/S1/S1 Computational systems biology: integration of sequence, structure, network, and dynamics.]] **--- //BMC Systems Biology//, 5(Suppl 1):S1, 2011
~1) Yongcui Wang, Yong Wang, Zhixia Yang, Nai-Yang Deng --- **[[http://www.biomedcentral.com/1752-0509/5/S1/S6 Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context.]] **--- //BMC Systems Biology//, 5(Suppl 1):S6, 2011

Revision [5419]

Edited on 2011-06-21 14:31:16 by YongWang
Additions:
~1) Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Weiming Xia and Luonan Chen. ---**[[http://pubs.rsc.org/en/Content/ArticleLanding/2011/MB/c0mb00325e Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients]].**---//Molecular Biosystems//, 7(5):1441-1452, 2011.
Deletions:
~1) Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Weiming Xia and Luonan Chen. ---**Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients.**---//Molecular Biosystems//, 7(5):1441-1452, 2011.

Revision [5418]

Edited on 2011-06-21 14:28:31 by YongWang
Additions:
~1) Zhi-Ping Liu, Yong Wang. Xiang-Sun Zhang, Luonan Chen. --- **Network-based analysis of complex diseases。** --- //IET Systems Biology//, in press.
~1) Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Weiming Xia and Luonan Chen. ---**Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients.**---//Molecular Biosystems//, 7(5):1441-1452, 2011.
Deletions:
~1) ~- Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Weiming Xia and Luonan Chen. ---**Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients.**---//Molecular Biosystems//, 7(5):1441-1452, 2011.---[[http://www.ncbi.nlm.nih.gov/pubmed/21336338 Abstract]] | [[http://pubs.rsc.org/en/Content/ArticleLanding/2011/MB/c0mb00325e Read the paper]] | [[http://www.aporc.org/doc/wiki/ADR Software and Webpage]]

Revision [5417]

Edited on 2011-06-21 14:26:25 by YongWang
Additions:
~1) Shihua Zhang, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou --- **[[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 A novel computational framework for simultaneous integration of multiple functional genomic data to identify microRNA-gene regulatory modules.]]** ---//Bioinformatics (ISMB2011)//, 27:i401-i409, 2011.
~1) ~- Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Weiming Xia and Luonan Chen. ---**Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients.**---//Molecular Biosystems//, 7(5):1441-1452, 2011.---[[http://www.ncbi.nlm.nih.gov/pubmed/21336338 Abstract]] | [[http://pubs.rsc.org/en/Content/ArticleLanding/2011/MB/c0mb00325e Read the paper]] | [[http://www.aporc.org/doc/wiki/ADR Software and Webpage]]
Deletions:
~1) __Shihua Zhang__, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou --- **[[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 A novel computational framework for simultaneous integration of multiple functional genomic data to identify microRNA-gene regulatory modules.]]** ---//Bioinformatics (ISMB2011)//, 27:i401-i409, 2011.

Revision [5416]

Edited on 2011-06-21 01:28:03 by RuishengWang
Additions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang --- **[[http://www.biomedcentral.com/1752-0509/5/S1/S11 Two-stage flux balance analysis of metabolic networks for drug target identification.]] **--- //BMC Systems Biology//, 5(Suppl 1):S11, 2011
Deletions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang --- **[[http://www.biomedcentral.com/1752-0509/5/S1/S11 Two-stage flux balance analysis of metabolic networks for drug target identification.]] **--- //BMC Systems Biology//, 5(Suppl 1):S11

Revision [5415]

Edited on 2011-06-20 23:00:09 by RuishengWang
Additions:
~1) Xiang-Sun Zhang, Zhenping Li, Rui-Sheng Wang, and Yong Wang ---**[[http://www.springerlink.com/content/v531g352776u1011/ A combinatorial model and algorithm for globally searching community structure in complex networks]]**--- //Journal of Combinatorial Optimization//, in press, 2011.
Deletions:
~1) Xiang-Sun Zhang, Zhenping Li, Ruisheng Wang, and Yong Wang ---**[[http://www.springerlink.com/content/v531g352776u1011/ A combinatorial model and algorithm for globally searching community structure in complex networks]]**--- //Journal of Combinatorial Optimization//, in press, 2011.

Revision [5414]

Edited on 2011-06-20 22:59:16 by RuishengWang

No Differences

Revision [5413]

Edited on 2011-06-20 22:59:01 by RuishengWang
Additions:
~1) Zhenping Li, Rui-Sheng Wang, Xiang-Sun Zhang --- **[[http://www.biomedcentral.com/1752-0509/5/S1/S11 Two-stage flux balance analysis of metabolic networks for drug target identification.]] **--- //BMC Systems Biology//, 5(Suppl 1):S11

Revision [5412]

Edited on 2011-06-20 14:48:53 by LingyunWu
Additions:
~1) Zhong-Yuan Zhang --- **Nonnegative Matrix Factorization: Models, Algorithms and Applications.** --- Chapter in //DATA MINING: Foundations and Intelligent Paradigms 2//, in press, 2011.
~1) Zhong-Yuan Zhang --- **Community Structure Detection in Social Networks Based on Dictionary Learning.** --- //Science China: Information Science//, in press, 2011. (SCI, IF: 0.387)
~1) Zhong-Yuan Zhang --- **Divergence Functions of Nonnegative Matrix Factorization: A Comparison Study.** --- //Communications in Statistics - Simulation and Computation//, in press, 2011. (SCI, IF: 0.383)

Revision [5408]

Edited on 2011-06-19 12:43:45 by ShihuaZhang

No Differences

Revision [5407]

Edited on 2011-06-19 12:43:19 by ShihuaZhang
Additions:
~1) Ji-Guang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, doi: 10.1093/nar/gkr251, 2011.
Deletions:
~2) Ji-Guang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, doi: 10.1093/nar/gkr251, 2011.

Revision [5406]

Edited on 2011-06-19 12:42:53 by ShihuaZhang
Additions:
~2) Ji-Guang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, doi: 10.1093/nar/gkr251, 2011.
~1) __Shihua Zhang__, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou --- **[[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 A novel computational framework for simultaneous integration of multiple functional genomic data to identify microRNA-gene regulatory modules.]]** ---//Bioinformatics (ISMB2011)//, 27:i401-i409, 2011.
Deletions:
~1) Ji-Guang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, doi: 10.1093/nar/gkr251, 2011.
~1) __Shihua Zhang__, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou --- **[[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 A novel computational framework for simultaneous integration of multiple functional genomic data to identify microRNA-gene regulatory modules.]]** ---//Bioinformatics (ISMB2011)//, 2011, 27:i401-i409.

Revision [5405]

Edited on 2011-06-19 12:42:04 by ShihuaZhang
Additions:
~1) __Shihua Zhang__, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou --- **[[http://bioinformatics.oxfordjournals.org/content/27/13/i401.short?rss=1 A novel computational framework for simultaneous integration of multiple functional genomic data to identify microRNA-gene regulatory modules.]]** ---//Bioinformatics (ISMB2011)//, 2011, 27:i401-i409.

Revision [5252]

Edited on 2011-05-09 20:20:19 by JiguangWang
Additions:
~1) Ji-Guang Wang, Qiang Huang, Zhi-Ping Liu, Yong Wang, Ling-Yun Wu, Luonan Chen, and Xiang-Sun Zhang --- **[[http://nar.oxfordjournals.org/content/early/2011/05/04/nar.gkr251.abstract?etoc NOA: a novel Network Ontology Analysis method.]] **--- //Nucleic Acids Research//, doi: 10.1093/nar/gkr251, 2011.

Revision [5129]

Edited on 2011-02-15 22:48:01 by LingyunWu
Additions:
~1) Xiang-Sun Zhang, Zhenping Li, Ruisheng Wang, and Yong Wang ---**[[http://www.springerlink.com/content/v531g352776u1011/ A combinatorial model and algorithm for globally searching community structure in complex networks]]**--- //Journal of Combinatorial Optimization//, in press, 2011.
Deletions:
~1) Xiang-Sun Zhang, Zhenping Li, Ruisheng Wang, and Yong Wang ---**[[http://www.springerlink.com/content/v531g352776u1011/ A combinatorial model and algorithm for globally searching community structure in complex networks]]**--- //Journal of Combinatorial Optimization//, in press, 2010.

Revision [5128]

The oldest known version of this page was created on 2011-02-15 22:47:49 by LingyunWu
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